supplementary materials


hb2701 scheme

Acta Cryst. (2008). E64, m560    [ doi:10.1107/S1600536808006764 ]

catena-Poly[[diaquadipyridinezinc(II)]-[mu]-succinato]

T. Duangthongyou and S. Siripaisarnpipat

Abstract top

In the title compound, [Zn(C4H4O4)(C5H5N)2(H2O)2]n, the ZnII ion (site symmetry \overline{1}) is coordinated in an octahedral geometry by two pyridine molecules, two water molecules and two bridging centrosymmetric O-monodentate succinate dianions to create one-dimensional polymeric chains. The chains are cross-linked by O-H...O hydrogen bonds, forming sheets.

Comment top

The molecular structure of the title compound, (I), (Fig. 1), consists of zinc(II) ions linked through succinate bridges to create one-dimensional polymeric chains. Each ZnII ion (site symmetry 1) is further coordinated by two pyridine molecules and two water molecules resulting in a slightly distorted trans-ZnN2O4 octahedral geometry (Table 1).

The coordinated water molecules form both intrachain O—H···O hydrogen bonds with the uncoordinated carboxyl group of a succinate ligand within the chain and intermolecular hydrogen bond with those in an adjacent chain (Fig. 2, Table 2). For a related structure, see Ohmura et al. (2003).

Related literature top

For a related structure containing fumarate ions, see: Ohmura et al. (2003).

Experimental top

A pyridine solution (10 ml) of succinic acid (0.116 g, 1 mmol) was added to an aqueous solution (10 ml) of zinc acetate dihydrate (0.148 g, 0.673 mmol). The mixture was then allowed to stand for several days at room temperature, after which colourless blocks of (I) precipitated.

Refinement top

All the H atoms except H3A were located in a difference map and their positions and Uiso values were freely refined. H3A was geometrically placed (O—H = 0.82 Å) and refined as riding with Uiso(H) = 1.5 Ueq(H).

Computing details top

Data collection: COLLECT (Hooft, 1998); cell refinement: DENZO (Otwinowski and Minor, 1997) and COLLECT (Hooft, 1998); data reduction: DENZO (Otwinowski and Minor, 1997) and COLLECT (Hooft, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: Mercury (Macrae et al., 2006) and local program.

Figures top
[Figure 1] Fig. 1. A fragment of the polymeric chain in (I) showing 50% displacement ellipsoids (arbitrary spheres for the H atoms). Symmetry codes: (i) 1 - x, -y, 1 - z; (ii) 1 - x, 1 - y, 1 - z; (iii) x, y + 1, z.
[Figure 2] Fig. 2. The packing in (I) viewed along the b axis with hydrogen bonds indicated by dashed lines.
catena-Poly[[diaquadipyridinezinc(II)]-µ-succinato] top
Crystal data top
[Zn(C4H4O4)(C5H5N)2(H2O)2]F000 = 776
Mr = 375.67Dx = 1.583 Mg m3
Orthorhombic, PbcaMo Kα radiation
λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2052 reflections
a = 11.8142 (8) Åθ = 2.9–27.5º
b = 8.9111 (7) ŵ = 1.59 mm1
c = 14.9705 (10) ÅT = 273 (2) K
V = 1576.06 (19) Å3Block, colourless
Z = 40.08 × 0.08 × 0.04 mm
Data collection top
Bruker–Nonious APEXII CCD camera on κ-goniostat
diffractometer
1814 independent reflections
Radiation source: fine-focus sealed tube1200 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.067
Detector resolution: 4096x4096pixels / 62x62mm pixels mm-1θmax = 27.6º
T = 273(2) Kθmin = 3.2º
φ and ω scansh = 15→15
Absorption correction: multi-scan
(SADABS; Sheldrick, 2007)
k = 11→10
Tmin = 0.804, Tmax = 0.931l = 19→17
9256 measured reflections
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difmap and geom
R[F2 > 2σ(F2)] = 0.065H atoms treated by a mixture of
independent and constrained refinement
wR(F2) = 0.108  w = 1/[σ2(Fo2) + 9.8897P]
where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max < 0.001
1814 reflectionsΔρmax = 0.55 e Å3
138 parametersΔρmin = 0.45 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Crystal data top
[Zn(C4H4O4)(C5H5N)2(H2O)2]V = 1576.06 (19) Å3
Mr = 375.67Z = 4
Orthorhombic, PbcaMo Kα
a = 11.8142 (8) ŵ = 1.59 mm1
b = 8.9111 (7) ÅT = 273 (2) K
c = 14.9705 (10) Å0.08 × 0.08 × 0.04 mm
Data collection top
Bruker–Nonious APEXII CCD camera on κ-goniostat
diffractometer
1814 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 2007)
1200 reflections with I > 2σ(I)
Tmin = 0.804, Tmax = 0.931Rint = 0.067
9256 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.065138 parameters
wR(F2) = 0.108H atoms treated by a mixture of
independent and constrained refinement
S = 1.13Δρmax = 0.55 e Å3
1814 reflectionsΔρmin = 0.45 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Zn10.50000.00000.50000.0147 (2)
O30.6625 (3)0.0017 (4)0.4416 (2)0.0186 (7)
H3A0.69100.08500.44770.028*
O20.5136 (3)0.2237 (4)0.5340 (2)0.0179 (7)
O10.6873 (3)0.2905 (4)0.4901 (2)0.0229 (8)
C30.3411 (5)0.1656 (6)0.2097 (4)0.0290 (13)
C20.4391 (5)0.2285 (6)0.2438 (4)0.0254 (12)
C50.3356 (4)0.0065 (7)0.3386 (3)0.0206 (10)
C60.5888 (4)0.3201 (5)0.5168 (3)0.0172 (10)
N10.4308 (3)0.0673 (4)0.3719 (3)0.0156 (8)
C10.4810 (4)0.1762 (6)0.3235 (3)0.0199 (11)
C70.5529 (4)0.4835 (6)0.5275 (4)0.0224 (11)
C40.2892 (5)0.0528 (7)0.2586 (4)0.0279 (13)
H40.224 (5)0.010 (6)0.243 (3)0.025 (15)*
H10.549 (4)0.205 (6)0.345 (3)0.018 (13)*
H30.308 (5)0.199 (7)0.154 (4)0.035 (17)*
H50.304 (4)0.066 (6)0.376 (4)0.026 (15)*
H20.476 (5)0.295 (6)0.209 (4)0.028 (16)*
H7A0.540 (4)0.492 (6)0.591 (4)0.018 (13)*
H70.616 (4)0.549 (5)0.514 (3)0.014 (13)*
H3B0.694 (5)0.064 (7)0.459 (4)0.04 (2)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Zn10.0146 (3)0.0125 (3)0.0169 (4)0.0005 (4)0.0010 (3)0.0002 (4)
O30.0190 (16)0.0113 (16)0.0254 (18)0.0048 (18)0.0012 (13)0.0012 (17)
O20.0192 (16)0.0116 (16)0.0229 (16)0.0006 (14)0.0033 (14)0.0022 (14)
O10.0160 (15)0.0137 (18)0.039 (2)0.0010 (17)0.0048 (15)0.0000 (13)
C30.041 (3)0.026 (3)0.020 (3)0.004 (2)0.012 (2)0.001 (3)
C20.036 (3)0.021 (3)0.019 (3)0.000 (2)0.004 (2)0.006 (2)
C50.019 (2)0.022 (3)0.021 (2)0.000 (3)0.0002 (18)0.001 (2)
C60.019 (2)0.015 (2)0.018 (3)0.003 (2)0.0046 (18)0.0011 (19)
N10.0181 (19)0.012 (2)0.017 (2)0.0011 (17)0.0012 (16)0.0016 (17)
C10.020 (3)0.018 (3)0.022 (3)0.001 (2)0.002 (2)0.001 (2)
C70.020 (2)0.014 (3)0.034 (3)0.001 (2)0.005 (2)0.003 (2)
C40.028 (3)0.026 (3)0.029 (3)0.003 (3)0.007 (2)0.005 (3)
Geometric parameters (Å, °) top
Zn1—O22.064 (3)C2—C11.374 (7)
Zn1—O2i2.064 (3)C2—H20.90 (6)
Zn1—O3i2.110 (3)C5—N11.345 (6)
Zn1—O32.110 (3)C5—C41.379 (7)
Zn1—N1i2.170 (4)C5—H50.93 (6)
Zn1—N12.170 (4)C6—C71.525 (7)
O3—H3A0.8200N1—C11.348 (6)
O3—H3B0.74 (6)C1—H10.90 (5)
O2—C61.263 (6)C7—C7ii1.526 (9)
O1—C61.258 (5)C7—H7A0.97 (5)
C3—C21.383 (8)C7—H70.97 (5)
C3—C41.387 (8)C4—H40.89 (6)
C3—H30.96 (6)
O2—Zn1—O2i180.0C1—C2—H2123 (4)
O2—Zn1—O3i88.60 (13)C3—C2—H2118 (4)
O2i—Zn1—O3i91.40 (13)N1—C5—C4122.2 (5)
O2—Zn1—O391.40 (13)N1—C5—H5113 (3)
O2i—Zn1—O388.60 (13)C4—C5—H5125 (3)
O3i—Zn1—O3180.0O1—C6—O2124.9 (4)
O2—Zn1—N1i91.12 (14)O1—C6—C7119.4 (4)
O2i—Zn1—N1i88.88 (14)O2—C6—C7115.7 (4)
O3i—Zn1—N1i88.53 (14)C5—N1—C1117.3 (4)
O3—Zn1—N1i91.47 (14)C5—N1—Zn1122.1 (3)
O2—Zn1—N188.88 (14)C1—N1—Zn1120.5 (3)
O2i—Zn1—N191.12 (14)N1—C1—C2123.5 (5)
O3i—Zn1—N191.47 (14)N1—C1—H1114 (3)
O3—Zn1—N188.53 (14)C2—C1—H1122 (3)
N1i—Zn1—N1180C6—C7—C7ii110.8 (5)
Zn1—O3—H3A109.5C6—C7—H7A103 (3)
Zn1—O3—H3B108 (5)C7ii—C7—H7A112 (3)
H3A—O3—H3B118.2C6—C7—H7110 (3)
C6—O2—Zn1131.5 (3)C7ii—C7—H7114 (3)
C2—C3—C4118.0 (5)H7A—C7—H7106 (4)
C2—C3—H3122 (3)C5—C4—C3120.0 (5)
C4—C3—H3120 (3)C5—C4—H4116 (3)
C1—C2—C3118.9 (5)C3—C4—H4124 (4)
O3i—Zn1—O2—C6174.6 (4)O3—Zn1—N1—C5137.5 (4)
O3—Zn1—O2—C65.4 (4)O2—Zn1—N1—C147.0 (4)
N1i—Zn1—O2—C696.9 (4)O2i—Zn1—N1—C1133.0 (4)
N1—Zn1—O2—C683.1 (4)O3i—Zn1—N1—C1135.6 (4)
C4—C3—C2—C10.5 (8)O3—Zn1—N1—C144.4 (4)
Zn1—O2—C6—O116.8 (7)C5—N1—C1—C21.0 (7)
Zn1—O2—C6—C7161.3 (3)Zn1—N1—C1—C2177.2 (4)
C4—C5—N1—C10.5 (7)C3—C2—C1—N11.0 (8)
C4—C5—N1—Zn1177.6 (4)O1—C6—C7—C7ii123.7 (6)
O2—Zn1—N1—C5131.1 (4)O2—C6—C7—C7ii54.5 (7)
O2i—Zn1—N1—C548.9 (4)N1—C5—C4—C30.1 (9)
O3i—Zn1—N1—C542.5 (4)C2—C3—C4—C50.1 (9)
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+1, −y+1, −z+1.
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
O3—H3A···O10.821.942.690 (5)152
O3—H3B···O1iii0.74 (6)1.97 (6)2.687 (5)164 (5)
Symmetry codes: (iii) −x+3/2, y−1/2, z.
Table 1
Selected geometric parameters (Å, °)
top
Zn1—O22.064 (3)Zn1—N12.170 (4)
Zn1—O32.110 (3)
O2i—Zn1—N1i88.88 (14)
Symmetry codes: (i) −x+1, −y, −z+1.
Table 2
Hydrogen-bond geometry (Å, °)
top
D—H···AD—HH···AD···AD—H···A
O3—H3A···O10.821.942.690 (5)152
O3—H3B···O1ii0.74 (6)1.97 (6)2.687 (5)164 (5)
Symmetry codes: (ii) −x+3/2, y−1/2, z.
Acknowledgements top

The authors thank the Development and Promotion of Science and Technology Talents fund.

references
References top

Hooft, R. W. W. (1998). COLLECT. Nonius BV, Delft, The Netherlands.

Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457.

Ohmura, T., Mori, W., Hasegawa, M., Takai, T., Ikeda, T. & Hasegawa, E. (2003). Bull. Chem. Soc. Jpn, 76, 1387–1395.

Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press.

Sheldrick, G. M. (2007). SADABS. Brucker AXS Inc., Madison, Wisconsin, USA.

Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.