supplementary materials
Butane-1,4-diammonium bis(pyridine-2,6-dicarboxylato-
3O2,N,O6)cadmate(II) dihydrate
A mixture of an aqueous solution (30 ml) of the proton transfer compound
(bdaH2)(pydc) (100 mg, 0.4 mmol) and cadmium(II) nitrate
Cd(NO3)2. 4H2O,
(60 mg, 0.2 mmol) were stirred at 0°C. Colorless crystals of the title
compound were obtained after 2 months at room temperature.
C-bound H atoms were placed in calculated positions.
Positions of N- and O-bound H atoms
were found on a difference Fourier map. All hydrogen atoms were refined
in riding model approximation, with Uiso(H)
equal to 1.2 Ueq(C) and 1.5 Ueq(N, O).
Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2 (Bruker, 2005); data reduction: APEX2 (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Butane-1,4-diammonium
bis(pyridine-2,6-dicarboxylato-
κ3O2,
N,
O6)cadmate(II)
dihydrate
top
Crystal data top
| (C4H14N2)[Cd(C7H3NO4)2]·2H2O | F(000) = 1152 |
| Mr = 568.81 | Dx = 1.768 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 6372 reflections |
| a = 11.0357 (4) Å | θ = 2.8–32.1° |
| b = 28.7181 (10) Å | µ = 1.09 mm−1 |
| c = 7.1116 (3) Å | T = 100 K |
| β = 108.544 (1)° | Prism, colourless |
| V = 2136.82 (14) Å3 | 0.28 × 0.07 × 0.05 mm |
| Z = 4 | |
Data collection top
Bruker SMART APEX II CCD area detector diffractometer | 5676 independent reflections |
| Radiation source: fine-focus sealed tube | 4655 reflections with I > 2σ(I) |
| graphite | Rint = 0.044 |
| phi and ω scans | θmax = 29.0°, θmin = 2.0° |
Absorption correction: multi-scan (APEX2; Bruker, 2005) | h = −15→15 |
| Tmin = 0.802, Tmax = 0.944 | k = −39→39 |
| 25988 measured reflections | l = −9→9 |
Refinement top
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: mixed |
| wR(F2) = 0.066 | H-atom parameters constrained |
| S = 1.00 | w = 1/[σ2(Fo2) + (0.0369P)2 + 0.2951P] where P = (Fo2 + 2Fc2)/3 |
| 5676 reflections | (Δ/σ)max = 0.001 |
| 298 parameters | Δρmax = 0.59 e Å−3 |
| 0 restraints | Δρmin = −0.71 e Å−3 |
Crystal data top
| (C4H14N2)[Cd(C7H3NO4)2]·2H2O | V = 2136.82 (14) Å3 |
| Mr = 568.81 | Z = 4 |
| Monoclinic, P21/c | Mo Kα radiation |
| a = 11.0357 (4) Å | µ = 1.09 mm−1 |
| b = 28.7181 (10) Å | T = 100 K |
| c = 7.1116 (3) Å | 0.28 × 0.07 × 0.05 mm |
| β = 108.544 (1)° | |
Data collection top
Bruker SMART APEX II CCD area detector diffractometer | 5676 independent reflections |
Absorption correction: multi-scan (APEX2; Bruker, 2005) | 4655 reflections with I > 2σ(I) |
| Tmin = 0.802, Tmax = 0.944 | Rint = 0.044 |
| 25988 measured reflections | θmax = 29.0° |
Refinement top
| R[F2 > 2σ(F2)] = 0.027 | H-atom parameters constrained |
| wR(F2) = 0.066 | Δρmax = 0.59 e Å−3 |
| S = 1.00 | Δρmin = −0.71 e Å−3 |
| 5676 reflections | Absolute structure: ? |
| 298 parameters | Flack parameter: ? |
| 0 restraints | Rogers parameter: ? |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top| | x | y | z | Uiso*/Ueq | |
| Cd1 | 0.653305 (14) | 0.865460 (5) | 0.02554 (2) | 0.01027 (5) | |
| O1 | 0.54740 (15) | 0.88396 (5) | 0.2485 (2) | 0.0163 (3) | |
| O2 | 0.49107 (15) | 0.94185 (5) | 0.4137 (2) | 0.0177 (3) | |
| O3 | 0.74579 (14) | 0.90014 (5) | −0.1942 (2) | 0.0133 (3) | |
| O4 | 0.80812 (14) | 0.96709 (5) | −0.2947 (2) | 0.0148 (3) | |
| O5 | 0.46311 (14) | 0.83512 (5) | −0.1895 (2) | 0.0130 (3) | |
| O6 | 0.35049 (14) | 0.77036 (5) | −0.2989 (2) | 0.0134 (3) | |
| O7 | 0.85227 (14) | 0.84106 (5) | 0.2568 (2) | 0.0135 (3) | |
| O8 | 0.97512 (14) | 0.77840 (5) | 0.3736 (2) | 0.0140 (3) | |
| N1 | 0.66045 (16) | 0.94278 (6) | 0.0692 (2) | 0.0107 (3) | |
| N2 | 0.66196 (16) | 0.78722 (6) | 0.0372 (2) | 0.0094 (3) | |
| C1 | 0.61249 (19) | 0.96095 (7) | 0.2039 (3) | 0.0106 (4) | |
| C2 | 0.6181 (2) | 1.00835 (7) | 0.2422 (3) | 0.0130 (4) | |
| H2A | 0.5863 | 1.0207 | 0.3381 | 0.016* | |
| C3 | 0.6726 (2) | 1.03710 (7) | 0.1332 (3) | 0.0144 (4) | |
| H3A | 0.6780 | 1.0690 | 0.1560 | 0.017* | |
| C4 | 0.7193 (2) | 1.01781 (7) | −0.0105 (3) | 0.0137 (4) | |
| H4A | 0.7546 | 1.0366 | −0.0861 | 0.016* | |
| C5 | 0.71190 (19) | 0.96990 (7) | −0.0379 (3) | 0.0106 (4) | |
| C6 | 0.5459 (2) | 0.92595 (7) | 0.2994 (3) | 0.0119 (4) | |
| C7 | 0.75859 (19) | 0.94381 (7) | −0.1888 (3) | 0.0108 (4) | |
| C8 | 0.56098 (19) | 0.76257 (7) | −0.0730 (3) | 0.0096 (4) | |
| C9 | 0.5627 (2) | 0.71438 (7) | −0.0708 (3) | 0.0119 (4) | |
| H9A | 0.4929 | 0.6975 | −0.1489 | 0.014* | |
| C10 | 0.67082 (19) | 0.69158 (7) | 0.0503 (3) | 0.0120 (4) | |
| H10A | 0.6738 | 0.6592 | 0.0553 | 0.014* | |
| C11 | 0.7742 (2) | 0.71772 (7) | 0.1635 (3) | 0.0117 (4) | |
| H11A | 0.8473 | 0.7032 | 0.2451 | 0.014* | |
| C12 | 0.76656 (19) | 0.76590 (7) | 0.1527 (3) | 0.0100 (4) | |
| C13 | 0.44812 (19) | 0.79128 (7) | −0.1984 (3) | 0.0106 (4) | |
| C14 | 0.87469 (19) | 0.79762 (7) | 0.2713 (3) | 0.0108 (4) | |
| N3 | −0.04463 (17) | 0.90758 (6) | 0.5575 (2) | 0.0125 (3) | |
| H3NA | 0.0079 | 0.9221 | 0.5045 | 0.019* | |
| H3NB | −0.0818 | 0.8834 | 0.4763 | 0.019* | |
| H3NC | −0.1029 | 0.9278 | 0.5727 | 0.019* | |
| N4 | 0.20003 (17) | 0.80268 (6) | 1.2890 (3) | 0.0129 (4) | |
| H4NA | 0.1477 | 0.7916 | 1.3553 | 0.019* | |
| H4NB | 0.2523 | 0.7791 | 1.2663 | 0.019* | |
| H4NC | 0.2430 | 0.8260 | 1.3538 | 0.019* | |
| C15 | 0.0263 (2) | 0.89086 (8) | 0.7619 (3) | 0.0140 (4) | |
| H15B | −0.0345 | 0.8793 | 0.8238 | 0.017* | |
| H15C | 0.0716 | 0.9169 | 0.8404 | 0.017* | |
| C16 | 0.1212 (2) | 0.85258 (8) | 0.7631 (3) | 0.0131 (4) | |
| H16B | 0.1777 | 0.8631 | 0.6915 | 0.016* | |
| H16C | 0.0753 | 0.8255 | 0.6947 | 0.016* | |
| C17 | 0.2010 (2) | 0.83878 (8) | 0.9735 (3) | 0.0137 (4) | |
| H17A | 0.2623 | 0.8152 | 0.9671 | 0.016* | |
| H17B | 0.2482 | 0.8657 | 1.0409 | 0.016* | |
| C18 | 0.11864 (19) | 0.82013 (8) | 1.0923 (3) | 0.0130 (4) | |
| H18A | 0.0632 | 0.8447 | 1.1110 | 0.016* | |
| H18B | 0.0652 | 0.7950 | 1.0195 | 0.016* | |
| O1W | 0.32860 (14) | 0.88159 (5) | 0.4844 (2) | 0.0142 (3) | |
| H1WA | 0.3663 | 0.8704 | 0.5821 | 0.021* | |
| H1WB | 0.3741 | 0.8990 | 0.4520 | 0.021* | |
| O2W | 0.12203 (15) | 0.94242 (6) | 0.3694 (2) | 0.0211 (4) | |
| H2WA | 0.1440 | 0.9692 | 0.3542 | 0.032* | |
| H2WB | 0.1883 | 0.9273 | 0.4046 | 0.032* | |
Atomic displacement parameters (Å2) top| | U11 | U22 | U33 | U12 | U13 | U23 |
| Cd1 | 0.01105 (8) | 0.00794 (7) | 0.01223 (8) | −0.00025 (6) | 0.00430 (5) | −0.00009 (6) |
| O1 | 0.0229 (8) | 0.0108 (7) | 0.0201 (8) | 0.0005 (6) | 0.0135 (7) | 0.0013 (6) |
| O2 | 0.0222 (8) | 0.0159 (8) | 0.0205 (8) | −0.0007 (6) | 0.0148 (7) | 0.0002 (6) |
| O3 | 0.0156 (7) | 0.0113 (7) | 0.0159 (7) | −0.0016 (6) | 0.0091 (6) | −0.0021 (6) |
| O4 | 0.0179 (8) | 0.0141 (8) | 0.0159 (7) | −0.0007 (6) | 0.0102 (6) | 0.0015 (6) |
| O5 | 0.0121 (7) | 0.0112 (7) | 0.0144 (7) | 0.0005 (6) | 0.0025 (6) | 0.0019 (6) |
| O6 | 0.0105 (7) | 0.0154 (8) | 0.0126 (7) | −0.0021 (6) | 0.0012 (6) | −0.0001 (6) |
| O7 | 0.0126 (7) | 0.0115 (7) | 0.0144 (7) | −0.0007 (6) | 0.0015 (6) | −0.0006 (6) |
| O8 | 0.0094 (7) | 0.0175 (8) | 0.0138 (7) | 0.0000 (6) | 0.0017 (6) | 0.0019 (6) |
| N1 | 0.0109 (8) | 0.0102 (8) | 0.0118 (8) | 0.0001 (6) | 0.0048 (7) | 0.0001 (6) |
| N2 | 0.0100 (8) | 0.0106 (8) | 0.0079 (8) | 0.0002 (6) | 0.0033 (6) | −0.0012 (6) |
| C1 | 0.0101 (9) | 0.0128 (10) | 0.0089 (9) | 0.0011 (8) | 0.0030 (7) | 0.0005 (8) |
| C2 | 0.0135 (10) | 0.0135 (10) | 0.0126 (10) | −0.0012 (8) | 0.0051 (8) | −0.0041 (8) |
| C3 | 0.0179 (11) | 0.0110 (10) | 0.0161 (10) | −0.0017 (8) | 0.0080 (8) | −0.0017 (8) |
| C4 | 0.0141 (10) | 0.0130 (10) | 0.0152 (10) | −0.0025 (8) | 0.0062 (8) | 0.0007 (8) |
| C5 | 0.0095 (9) | 0.0122 (10) | 0.0108 (9) | 0.0000 (7) | 0.0042 (7) | 0.0006 (7) |
| C6 | 0.0134 (10) | 0.0120 (10) | 0.0100 (9) | 0.0006 (8) | 0.0034 (8) | 0.0029 (8) |
| C7 | 0.0094 (9) | 0.0116 (10) | 0.0115 (9) | −0.0002 (7) | 0.0035 (8) | −0.0013 (7) |
| C8 | 0.0099 (10) | 0.0123 (10) | 0.0082 (9) | −0.0004 (7) | 0.0050 (7) | 0.0016 (7) |
| C9 | 0.0138 (10) | 0.0121 (10) | 0.0110 (9) | −0.0015 (8) | 0.0059 (8) | −0.0005 (8) |
| C10 | 0.0160 (11) | 0.0092 (9) | 0.0122 (10) | 0.0005 (8) | 0.0066 (8) | 0.0002 (7) |
| C11 | 0.0118 (10) | 0.0133 (10) | 0.0109 (9) | 0.0036 (8) | 0.0046 (8) | 0.0030 (8) |
| C12 | 0.0102 (9) | 0.0129 (10) | 0.0078 (9) | 0.0002 (7) | 0.0040 (7) | 0.0006 (7) |
| C13 | 0.0104 (10) | 0.0134 (10) | 0.0091 (9) | 0.0009 (8) | 0.0045 (8) | 0.0013 (7) |
| C14 | 0.0111 (10) | 0.0135 (10) | 0.0091 (9) | −0.0017 (8) | 0.0050 (8) | −0.0005 (7) |
| N3 | 0.0126 (8) | 0.0126 (9) | 0.0126 (8) | −0.0006 (7) | 0.0046 (7) | 0.0000 (7) |
| N4 | 0.0126 (9) | 0.0141 (9) | 0.0121 (8) | 0.0005 (7) | 0.0042 (7) | 0.0002 (7) |
| C15 | 0.0133 (10) | 0.0181 (11) | 0.0108 (10) | −0.0004 (8) | 0.0042 (8) | −0.0019 (8) |
| C16 | 0.0122 (10) | 0.0155 (10) | 0.0126 (10) | 0.0012 (8) | 0.0054 (8) | 0.0010 (8) |
| C17 | 0.0121 (10) | 0.0159 (11) | 0.0143 (10) | 0.0014 (8) | 0.0058 (8) | 0.0010 (8) |
| C18 | 0.0093 (10) | 0.0171 (11) | 0.0119 (10) | 0.0001 (8) | 0.0023 (8) | 0.0018 (8) |
| O1W | 0.0137 (8) | 0.0153 (7) | 0.0135 (7) | −0.0005 (6) | 0.0044 (6) | 0.0037 (6) |
| O2W | 0.0187 (8) | 0.0174 (8) | 0.0304 (9) | 0.0010 (6) | 0.0123 (7) | 0.0074 (7) |
Geometric parameters (Å, °) top
| Cd1—N1 | 2.2399 (17) | C9—H9A | 0.9300 |
| Cd1—N2 | 2.2493 (17) | C10—C11 | 1.388 (3) |
| Cd1—O1 | 2.3113 (15) | C10—H10A | 0.9300 |
| Cd1—O5 | 2.3370 (15) | C11—C12 | 1.387 (3) |
| Cd1—O3 | 2.3433 (14) | C11—H11A | 0.9300 |
| Cd1—O7 | 2.3917 (15) | C12—C14 | 1.525 (3) |
| O1—C6 | 1.261 (3) | N3—C15 | 1.494 (3) |
| O2—C6 | 1.244 (3) | N3—H3NA | 0.8893 |
| O3—C7 | 1.262 (2) | N3—H3NB | 0.9137 |
| O4—C7 | 1.255 (2) | N3—H3NC | 0.8970 |
| O5—C13 | 1.269 (2) | N4—C18 | 1.488 (3) |
| O6—C13 | 1.242 (2) | N4—H4NA | 0.9110 |
| O7—C14 | 1.269 (2) | N4—H4NB | 0.9372 |
| O8—C14 | 1.245 (2) | N4—H4NC | 0.8628 |
| N1—C5 | 1.336 (3) | C15—C16 | 1.517 (3) |
| N1—C1 | 1.339 (3) | C15—H15B | 0.9700 |
| N2—C12 | 1.334 (3) | C15—H15C | 0.9700 |
| N2—C8 | 1.342 (3) | C16—C17 | 1.528 (3) |
| C1—C2 | 1.386 (3) | C16—H16B | 0.9700 |
| C1—C6 | 1.526 (3) | C16—H16C | 0.9700 |
| C2—C3 | 1.394 (3) | C17—C18 | 1.521 (3) |
| C2—H2A | 0.9300 | C17—H17A | 0.9700 |
| C3—C4 | 1.397 (3) | C17—H17B | 0.9700 |
| C3—H3A | 0.9300 | C18—H18A | 0.9700 |
| C4—C5 | 1.388 (3) | C18—H18B | 0.9700 |
| C4—H4A | 0.9300 | O1W—H1WA | 0.7580 |
| C5—C7 | 1.526 (3) | O1W—H1WB | 0.7927 |
| C8—C9 | 1.384 (3) | O2W—H2WA | 0.8246 |
| C8—C13 | 1.523 (3) | O2W—H2WB | 0.8183 |
| C9—C10 | 1.393 (3) | | |
| | | |
| N1—Cd1—N2 | 170.37 (6) | C11—C10—H10A | 120.4 |
| N1—Cd1—O1 | 71.35 (6) | C9—C10—H10A | 120.4 |
| N2—Cd1—O1 | 103.25 (6) | C12—C11—C10 | 118.90 (19) |
| N1—Cd1—O5 | 116.42 (6) | C12—C11—H11A | 120.5 |
| N2—Cd1—O5 | 70.76 (5) | C10—C11—H11A | 120.5 |
| O1—Cd1—O5 | 89.41 (6) | N2—C12—C11 | 121.14 (19) |
| N1—Cd1—O3 | 70.59 (6) | N2—C12—C14 | 115.98 (18) |
| N2—Cd1—O3 | 115.25 (5) | C11—C12—C14 | 122.87 (18) |
| O1—Cd1—O3 | 141.50 (5) | O6—C13—O5 | 125.73 (19) |
| O5—Cd1—O3 | 102.30 (5) | O6—C13—C8 | 118.25 (18) |
| N1—Cd1—O7 | 102.18 (6) | O5—C13—C8 | 116.01 (17) |
| N2—Cd1—O7 | 70.31 (5) | O8—C14—O7 | 126.69 (19) |
| O1—Cd1—O7 | 98.60 (5) | O8—C14—C12 | 116.93 (18) |
| O5—Cd1—O7 | 141.06 (5) | O7—C14—C12 | 116.37 (18) |
| O3—Cd1—O7 | 94.81 (5) | C15—N3—H3NA | 110.6 |
| C6—O1—Cd1 | 118.20 (13) | C15—N3—H3NB | 111.2 |
| C7—O3—Cd1 | 118.05 (12) | H3NA—N3—H3NB | 108.0 |
| C13—O5—Cd1 | 118.57 (13) | C15—N3—H3NC | 105.3 |
| C14—O7—Cd1 | 117.15 (13) | H3NA—N3—H3NC | 109.7 |
| C5—N1—C1 | 121.14 (18) | H3NB—N3—H3NC | 111.9 |
| C5—N1—Cd1 | 120.09 (14) | C18—N4—H4NA | 108.1 |
| C1—N1—Cd1 | 118.76 (13) | C18—N4—H4NB | 107.6 |
| C12—N2—C8 | 120.84 (18) | H4NA—N4—H4NB | 111.3 |
| C12—N2—Cd1 | 119.97 (13) | C18—N4—H4NC | 107.8 |
| C8—N2—Cd1 | 119.19 (13) | H4NA—N4—H4NC | 108.9 |
| N1—C1—C2 | 121.36 (19) | H4NB—N4—H4NC | 112.9 |
| N1—C1—C6 | 114.67 (18) | N3—C15—C16 | 112.65 (17) |
| C2—C1—C6 | 123.87 (18) | N3—C15—H15B | 109.1 |
| C1—C2—C3 | 118.22 (19) | C16—C15—H15B | 109.1 |
| C1—C2—H2A | 120.9 | N3—C15—H15C | 109.1 |
| C3—C2—H2A | 120.9 | C16—C15—H15C | 109.1 |
| C2—C3—C4 | 119.8 (2) | H15B—C15—H15C | 107.8 |
| C2—C3—H3A | 120.1 | C15—C16—C17 | 112.01 (17) |
| C4—C3—H3A | 120.1 | C15—C16—H16B | 109.2 |
| C5—C4—C3 | 118.46 (19) | C17—C16—H16B | 109.2 |
| C5—C4—H4A | 120.8 | C15—C16—H16C | 109.2 |
| C3—C4—H4A | 120.8 | C17—C16—H16C | 109.2 |
| N1—C5—C4 | 120.96 (19) | H16B—C16—H16C | 107.9 |
| N1—C5—C7 | 114.49 (18) | C18—C17—C16 | 112.08 (17) |
| C4—C5—C7 | 124.55 (18) | C18—C17—H17A | 109.2 |
| O2—C6—O1 | 126.3 (2) | C16—C17—H17A | 109.2 |
| O2—C6—C1 | 116.86 (18) | C18—C17—H17B | 109.2 |
| O1—C6—C1 | 116.76 (18) | C16—C17—H17B | 109.2 |
| O4—C7—O3 | 125.23 (19) | H17A—C17—H17B | 107.9 |
| O4—C7—C5 | 118.00 (18) | N4—C18—C17 | 110.61 (17) |
| O3—C7—C5 | 116.76 (17) | N4—C18—H18A | 109.5 |
| N2—C8—C9 | 120.98 (18) | C17—C18—H18A | 109.5 |
| N2—C8—C13 | 115.40 (17) | N4—C18—H18B | 109.5 |
| C9—C8—C13 | 123.63 (18) | C17—C18—H18B | 109.5 |
| C8—C9—C10 | 118.89 (19) | H18A—C18—H18B | 108.1 |
| C8—C9—H9A | 120.6 | H1WA—O1W—H1WB | 108.6 |
| C10—C9—H9A | 120.6 | H2WA—O2W—H2WB | 105.3 |
| C11—C10—C9 | 119.24 (19) | | |
| | | |
| N1—Cd1—O1—C6 | −3.07 (15) | C1—N1—C5—C7 | −178.33 (17) |
| N2—Cd1—O1—C6 | 168.63 (15) | Cd1—N1—C5—C7 | 1.7 (2) |
| O5—Cd1—O1—C6 | −121.31 (16) | C3—C4—C5—N1 | 0.5 (3) |
| O3—Cd1—O1—C6 | −12.1 (2) | C3—C4—C5—C7 | 179.94 (19) |
| O7—Cd1—O1—C6 | 96.96 (16) | Cd1—O1—C6—O2 | 178.27 (17) |
| N1—Cd1—O3—C7 | 0.66 (14) | Cd1—O1—C6—C1 | 1.3 (2) |
| N2—Cd1—O3—C7 | −171.05 (14) | N1—C1—C6—O2 | −174.47 (18) |
| O1—Cd1—O3—C7 | 9.71 (18) | C2—C1—C6—O2 | 2.0 (3) |
| O5—Cd1—O3—C7 | 114.61 (14) | N1—C1—C6—O1 | 2.8 (3) |
| O7—Cd1—O3—C7 | −100.58 (14) | C2—C1—C6—O1 | 179.3 (2) |
| N1—Cd1—O5—C13 | −170.64 (14) | Cd1—O3—C7—O4 | 178.78 (16) |
| N2—Cd1—O5—C13 | 2.38 (14) | Cd1—O3—C7—C5 | 0.0 (2) |
| O1—Cd1—O5—C13 | −101.88 (14) | N1—C5—C7—O4 | −179.97 (18) |
| O3—Cd1—O5—C13 | 115.11 (14) | C4—C5—C7—O4 | 0.6 (3) |
| O7—Cd1—O5—C13 | 1.14 (18) | N1—C5—C7—O3 | −1.1 (3) |
| N1—Cd1—O7—C14 | 177.80 (14) | C4—C5—C7—O3 | 179.49 (19) |
| N2—Cd1—O7—C14 | 4.07 (14) | C12—N2—C8—C9 | −0.4 (3) |
| O1—Cd1—O7—C14 | 105.15 (14) | Cd1—N2—C8—C9 | 179.68 (14) |
| O5—Cd1—O7—C14 | 5.33 (18) | C12—N2—C8—C13 | −179.87 (17) |
| O3—Cd1—O7—C14 | −111.05 (14) | Cd1—N2—C8—C13 | 0.2 (2) |
| O1—Cd1—N1—C5 | −175.36 (16) | N2—C8—C9—C10 | 0.9 (3) |
| O5—Cd1—N1—C5 | −95.72 (15) | C13—C8—C9—C10 | −179.67 (18) |
| O3—Cd1—N1—C5 | −1.29 (14) | C8—C9—C10—C11 | −0.7 (3) |
| O7—Cd1—N1—C5 | 89.55 (15) | C9—C10—C11—C12 | 0.1 (3) |
| O1—Cd1—N1—C1 | 4.68 (14) | C8—N2—C12—C11 | −0.3 (3) |
| O5—Cd1—N1—C1 | 84.32 (15) | Cd1—N2—C12—C11 | 179.66 (14) |
| O3—Cd1—N1—C1 | 178.74 (16) | C8—N2—C12—C14 | −179.80 (17) |
| O7—Cd1—N1—C1 | −90.41 (15) | Cd1—N2—C12—C14 | 0.1 (2) |
| O1—Cd1—N2—C12 | −96.51 (15) | C10—C11—C12—N2 | 0.4 (3) |
| O5—Cd1—N2—C12 | 178.85 (16) | C10—C11—C12—C14 | 179.90 (18) |
| O3—Cd1—N2—C12 | 83.98 (15) | Cd1—O5—C13—O6 | 176.78 (16) |
| O7—Cd1—N2—C12 | −1.98 (14) | Cd1—O5—C13—C8 | −3.1 (2) |
| O1—Cd1—N2—C8 | 83.43 (15) | N2—C8—C13—O6 | −177.92 (17) |
| O5—Cd1—N2—C8 | −1.21 (13) | C9—C8—C13—O6 | 2.6 (3) |
| O3—Cd1—N2—C8 | −96.08 (14) | N2—C8—C13—O5 | 1.9 (3) |
| O7—Cd1—N2—C8 | 177.96 (16) | C9—C8—C13—O5 | −177.53 (19) |
| C5—N1—C1—C2 | −2.2 (3) | Cd1—O7—C14—O8 | 175.41 (16) |
| Cd1—N1—C1—C2 | 177.80 (15) | Cd1—O7—C14—C12 | −5.4 (2) |
| C5—N1—C1—C6 | 174.40 (18) | N2—C12—C14—O8 | −177.06 (17) |
| Cd1—N1—C1—C6 | −5.6 (2) | C11—C12—C14—O8 | 3.4 (3) |
| N1—C1—C2—C3 | 1.4 (3) | N2—C12—C14—O7 | 3.6 (3) |
| C6—C1—C2—C3 | −174.79 (19) | C11—C12—C14—O7 | −175.88 (19) |
| C1—C2—C3—C4 | 0.2 (3) | N3—C15—C16—C17 | 175.10 (17) |
| C2—C3—C4—C5 | −1.2 (3) | C15—C16—C17—C18 | 61.0 (2) |
| C1—N1—C5—C4 | 1.1 (3) | C16—C17—C18—N4 | 174.37 (17) |
| Cd1—N1—C5—C4 | −178.82 (15) | | |
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3NA···O2W | 0.89 | 1.90 | 2.782 (2) | 169 |
| N3—H3NB···O7i | 0.91 | 1.93 | 2.823 (2) | 166 |
| N3—H3NC···O4ii | 0.90 | 1.93 | 2.784 (2) | 159 |
| N4—H4NA···O8ii | 0.91 | 1.99 | 2.821 (3) | 152 |
| N4—H4NB···O6iii | 0.94 | 1.93 | 2.865 (2) | 176 |
| N4—H4NC···O1Wiv | 0.86 | 1.94 | 2.797 (2) | 175 |
| O1W—H1WA···O5iv | 0.76 | 1.92 | 2.678 (2) | 173 |
| O1W—H1WB···O2 | 0.79 | 1.87 | 2.653 (2) | 172 |
| O2W—H2WA···O4v | 0.82 | 1.99 | 2.809 (2) | 175 |
| O2W—H2WB···O1W | 0.82 | 1.97 | 2.781 (2) | 170 |
| Symmetry codes: (i) x−1, y, z; (ii) x−1, y, z+1; (iii) x, −y+3/2, z+3/2; (iv) x, y, z+1; (v) −x+1, −y+2, −z. |
Table 1
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3NA···O2W | 0.89 | 1.90 | 2.782 (2) | 169 |
| N3—H3NB···O7i | 0.91 | 1.93 | 2.823 (2) | 166 |
| N3—H3NC···O4ii | 0.90 | 1.93 | 2.784 (2) | 159 |
| N4—H4NA···O8ii | 0.91 | 1.99 | 2.821 (3) | 152 |
| N4—H4NB···O6iii | 0.94 | 1.93 | 2.865 (2) | 176 |
| N4—H4NC···O1Wiv | 0.86 | 1.94 | 2.797 (2) | 175 |
| O1W—H1WA···O5iv | 0.76 | 1.92 | 2.678 (2) | 173 |
| O1W—H1WB···O2 | 0.79 | 1.87 | 2.653 (2) | 172 |
| O2W—H2WA···O4v | 0.82 | 1.99 | 2.809 (2) | 175 |
| O2W—H2WB···O1W | 0.82 | 1.97 | 2.781 (2) | 170 |
| Symmetry codes: (i) x−1, y, z; (ii) x−1, y, z+1; (iii) x, −y+3/2, z+3/2; (iv) x, y, z+1; (v) −x+1, −y+2, −z. |
Aghabozorg, H., Firoozi, N., Roshan, L., Attar Gharamaleki, J. & Ghadermazi, M. (2008). Acta Cryst. E64, m743–m744.
Aghabozorg, H., Manteghi, F. & Sheshmani, S. (2008). J. Iran. Chem. Soc. 5, 184–227.
Bruker (2005). APEX2. Bruker AXS Inc., Madison, Wisconsin, USA.
Odoko, M., Kusano, A. & Okabe, N. (2002). Acta Cryst. E58, m25–m27.
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.
Our research group has recently focused on a one-pot synthesis of water soluble self-assembly systems that can function as suitable ligands in the synthesis of metal complexes. In connection with this research area, pyridine2,6-dicarboxylic acid (pydcH2) has been selected as a proton donor and different amines as acceptor agents, and several metal complexes of these systems have been synthesized and their X-ray crystal structures reported (Aghabozorg, Firoozi et al., 2008; Aghabozorg, Manteghi et al., 2008). The major intermolecular interactions that are required in the preparation of supramolecular metal complexes have been present in most of these complexes. In order to develop novel systems, we report here a new complex of CdII with butane-1,4-diammonium pyridine-2,6-dicarboxylato as a proton transfer compound.
The title compound, I, consists of [Cd(pydc)2]2- anion (pydcH2= pyridine-2,6-dicarboxylic acid), (bdaH2)2+ cation (bda=butane-1,4-diamine) and two uncoordinated water molecules (Fig. 1). CdII atom is six-coordinated by the four O and two N atoms from two (pydc)2- ligands. The coordinating bond lengths (Cd—N 2.2399 (17) and 2.2493 (17) Å, and Cd—O 2.3113 (15), 2.3370 (15), 2.3433 (14) and 2.3917 (15) Å) lie in the normal ranges corresponding to those in realated complexes of CdII containing pyridine-2,6-dicarboxylate as a ligand (Odoko et al., 2002). The bond lengths and bond angles around of metal center indicate that the geometric arrangement of six donor atoms around the CdII atom is distorted octahedral.
The N1—Cd1—N2 angle (170.36 (6)°) deviates slightly from linearity. The O1–Cd1–O5 and O3–Cd1–O7 bond angles and O1–Cd1–O5—C13 and O1–Cd1–O7—C14 torsion angles are 89.41 (6)°, 94.81 (5)°, -101.88 (14)° and 105.15 (14)°, respectively, indicating that two dianionic(pydc)2– fragments are almost perpendicular to each other.The bond angles O1–Cd1–O3 [141.50 (5)°] and O5–Cd1–O7 [141.06 (5)°] indicate that the four carboxylate groups of the two dianions are oriented in a flattened tetrahedral arrangement around the CdIIatom.
In the crystal, there are O—H···O and N—H···O hydrogen bonding interactions between the cations, anions and uncoordinated water molecules (Table 1). The water molecules acts also as bridging agents and link the cations to anions via hydrogen bonds (Fig. 1) and therefore, the spaces between two layers of [Cd(pydc)2]2– anions are filled with (badH2)2+ cations and water molecules. There are also π-π stacking interactions (Fig. 2) between the aromatic rings of the coordinated (pydc)2- anions proved by short distances Cg1···Cg1(1-x,2-y,-z) of 3.5313 (13) Å (Cg1 is a centroid of N1/C2—C5), and Cg2···Cg2(x,3/2-y,1/2+z) of 3.6028 (11) Å (Cg2 is a centroid of N2/C8—C12). Ion pairing, hydrogen bonding and π–π stacking interactions stabilize the crystal packing.