supplementary materials
Pheophorbide b ethyl ester from a chlorella vulgaris dietary supplement
In the title compound, C37H38N4O6, four five-membered nitrogen-bearing rings are nearly coplanar. Two N atoms in two these five-membered rings have attached H atoms, which contribute to the formation of intramolecular N-H
N hydrogen bonds [N
N = 2.713 (5)-3.033 (6) Å].
A sample of the dietary supplement Chlorenergy (C'est Si Bon Co., USA) (20 g)
was dissolved in 100 ml e thanol and 10 ml dilute sulfuric acid (10%,
v/v). The mixture was heated at 323 K for 2 h. The solution was
cooled and then stirred at room temperature for 3 days under normal day light
(light intensity not measured), during which the solution turned green
yellowish. The solvent was evaporated to dryness at reduced pressure. The
crude product was purified by HPLC on an RP18e semi-preparative column (Merck
Chromolith 100–10 mm) with acetonitrile-water (90:10, v/v) as
the eluent. Pheophorbide b ethyl ester was isolated as brownish plates.
Single crystals were grown by slow evaporation of a mixture of acetone and
chloroform solution.
C-bound H-atoms were placed in calculated positions (C—H 0.95 to 0.99 Å) and were included in the refinement in the riding model approximation,
with Uiso(H) set to 1.2–1.5Ueq(C).
The amino H-atoms were located
on a difference Fourier map, and were isotropically
refined with a distance restraint N–H=0.88 (2) Å).
In the absence of heavy scatterers, 3452 Friedel pairs were merged in
the refinement.
Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2008).
Crystal data top
| C37H38N4O6 | F(000) = 672 |
| Mr = 634.71 | Dx = 1.352 Mg m−3 |
| Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2yb | Cell parameters from 3714 reflections |
| a = 7.0222 (2) Å | θ = 2.7–28.4° |
| b = 30.5501 (7) Å | µ = 0.09 mm−1 |
| c = 7.8539 (2) Å | T = 100 K |
| β = 112.300 (2)° | Plate, brown |
| V = 1558.87 (7) Å3 | 0.35 × 0.20 × 0.01 mm |
| Z = 2 | |
Data collection top
Bruker SMART APEX diffractometer | 3100 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.054 |
| graphite | θmax = 27.5°, θmin = 1.3° |
| ω scans | h = −9→9 |
| 14310 measured reflections | k = −39→39 |
| 3633 independent reflections | l = −9→10 |
Refinement top
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.064 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.177 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.17 | w = 1/[σ2(Fo2) + (0.0986P)2 + 0.882P] where P = (Fo2 + 2Fc2)/3 |
| 3633 reflections | (Δ/σ)max = 0.001 |
| 438 parameters | Δρmax = 0.55 e Å−3 |
| 3 restraints | Δρmin = −0.38 e Å−3 |
Crystal data top
| C37H38N4O6 | V = 1558.87 (7) Å3 |
| Mr = 634.71 | Z = 2 |
| Monoclinic, P21 | Mo Kα radiation |
| a = 7.0222 (2) Å | µ = 0.09 mm−1 |
| b = 30.5501 (7) Å | T = 100 K |
| c = 7.8539 (2) Å | 0.35 × 0.20 × 0.01 mm |
| β = 112.300 (2)° | |
Data collection top
Bruker SMART APEX diffractometer | 3100 reflections with I > 2σ(I) |
| 14310 measured reflections | Rint = 0.054 |
| 3633 independent reflections | θmax = 27.5° |
Refinement top
| R[F2 > 2σ(F2)] = 0.064 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.177 | Δρmax = 0.55 e Å−3 |
| S = 1.17 | Δρmin = −0.38 e Å−3 |
| 3633 reflections | Absolute structure: ? |
| 438 parameters | Flack parameter: ? |
| 3 restraints | Rogers parameter: ? |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top| | x | y | z | Uiso*/Ueq | |
| O1 | 0.4731 (6) | 0.50000 (12) | 0.2630 (5) | 0.0208 (8) | |
| O2 | 0.2600 (6) | 0.49420 (13) | 0.4146 (6) | 0.0291 (9) | |
| O3 | −0.0879 (6) | 0.43359 (11) | 0.0419 (5) | 0.0197 (8) | |
| O4 | −0.2243 (5) | 0.39650 (12) | 0.2153 (5) | 0.0194 (7) | |
| O5 | −0.1704 (5) | 0.33907 (12) | −0.1938 (4) | 0.0185 (7) | |
| O6 | 0.2153 (7) | 0.07387 (13) | 0.9416 (5) | 0.0317 (9) | |
| N1 | 0.3166 (7) | 0.25068 (14) | 0.8896 (6) | 0.0151 (8) | |
| H1N | 0.236 (11) | 0.251 (3) | 0.772 (3) | 0.06 (3)* | |
| N2 | 0.2567 (6) | 0.32123 (13) | 0.6242 (5) | 0.0144 (8) | |
| N3 | 0.0540 (6) | 0.25217 (13) | 0.3274 (5) | 0.0132 (8) | |
| H3N | 0.101 (8) | 0.2426 (19) | 0.441 (3) | 0.019 (15)* | |
| N4 | 0.1148 (6) | 0.18688 (13) | 0.5768 (5) | 0.0145 (8) | |
| C1 | 0.3315 (7) | 0.21173 (16) | 0.9824 (6) | 0.0136 (9) | |
| C2 | 0.4415 (7) | 0.22289 (17) | 1.1778 (6) | 0.0147 (9) | |
| C3 | 0.4902 (9) | 0.19315 (19) | 1.3358 (7) | 0.0270 (12) | |
| H3 | 0.5425 | 0.2079 | 1.4508 | 0.032* | |
| C4 | 0.4778 (11) | 0.1527 (2) | 1.3517 (8) | 0.0388 (16) | |
| H4A | 0.4273 | 0.1348 | 1.2451 | 0.047* | |
| H4B | 0.5187 | 0.1399 | 1.4704 | 0.047* | |
| C5 | 0.4844 (7) | 0.26621 (16) | 1.1902 (6) | 0.0149 (9) | |
| C6 | 0.6018 (8) | 0.29141 (17) | 1.3629 (6) | 0.0173 (10) | |
| H6A | 0.7268 | 0.2753 | 1.4360 | 0.026* | |
| H6B | 0.5155 | 0.2952 | 1.4349 | 0.026* | |
| H6C | 0.6395 | 0.3202 | 1.3303 | 0.026* | |
| C7 | 0.4064 (7) | 0.28444 (16) | 1.0051 (6) | 0.0135 (9) | |
| C8 | 0.4182 (7) | 0.32710 (16) | 0.9564 (6) | 0.0129 (9) | |
| H8 | 0.4804 | 0.3471 | 1.0545 | 0.016* | |
| C9 | 0.3481 (7) | 0.34462 (16) | 0.7770 (6) | 0.0142 (9) | |
| C10 | 0.3693 (7) | 0.39297 (15) | 0.7423 (6) | 0.0132 (9) | |
| H10 | 0.5172 | 0.4018 | 0.8000 | 0.016* | |
| C11 | 0.2387 (9) | 0.42253 (16) | 0.8135 (7) | 0.0200 (10) | |
| H11A | 0.2931 | 0.4215 | 0.9482 | 0.030* | |
| H11B | 0.0959 | 0.4122 | 0.7647 | 0.030* | |
| H11C | 0.2439 | 0.4527 | 0.7729 | 0.030* | |
| C12 | 0.2977 (7) | 0.39420 (16) | 0.5286 (6) | 0.0137 (9) | |
| H12 | 0.1865 | 0.4165 | 0.4753 | 0.016* | |
| C13 | 0.4771 (7) | 0.40329 (15) | 0.4667 (6) | 0.0151 (9) | |
| H13A | 0.5884 | 0.3820 | 0.5277 | 0.018* | |
| H13B | 0.4289 | 0.3983 | 0.3324 | 0.018* | |
| C14 | 0.5668 (8) | 0.44977 (16) | 0.5091 (7) | 0.0187 (10) | |
| H14A | 0.6030 | 0.4562 | 0.6413 | 0.022* | |
| H14B | 0.6944 | 0.4514 | 0.4839 | 0.022* | |
| C15 | 0.4162 (8) | 0.48372 (16) | 0.3950 (7) | 0.0180 (10) | |
| C16 | 0.3316 (9) | 0.53099 (19) | 0.1365 (7) | 0.0243 (11) | |
| H16A | 0.1884 | 0.5210 | 0.1061 | 0.029* | |
| H16B | 0.3571 | 0.5320 | 0.0209 | 0.029* | |
| C17 | 0.3570 (9) | 0.5764 (2) | 0.2186 (9) | 0.0294 (12) | |
| H17A | 0.2695 | 0.5970 | 0.1262 | 0.044* | |
| H17B | 0.5011 | 0.5855 | 0.2576 | 0.044* | |
| H17C | 0.3167 | 0.5762 | 0.3252 | 0.044* | |
| C18 | 0.2128 (7) | 0.34861 (15) | 0.4764 (6) | 0.0137 (9) | |
| C19 | 0.1041 (7) | 0.33397 (15) | 0.3001 (6) | 0.0139 (9) | |
| C20 | 0.0327 (7) | 0.36154 (15) | 0.1264 (6) | 0.0131 (9) | |
| H20 | 0.1544 | 0.3737 | 0.1058 | 0.016* | |
| C21 | −0.1089 (7) | 0.39854 (15) | 0.1341 (6) | 0.0135 (9) | |
| C22 | −0.2130 (8) | 0.47095 (16) | 0.0499 (7) | 0.0200 (10) | |
| H22A | −0.1934 | 0.4948 | −0.0251 | 0.030* | |
| H22B | −0.1714 | 0.4807 | 0.1777 | 0.030* | |
| H22C | −0.3583 | 0.4624 | 0.0024 | 0.030* | |
| C23 | −0.0867 (7) | 0.32839 (16) | −0.0327 (7) | 0.0158 (9) | |
| C24 | −0.0692 (7) | 0.28555 (15) | 0.0547 (6) | 0.0128 (9) | |
| C25 | 0.0404 (7) | 0.29118 (16) | 0.2478 (7) | 0.0147 (9) | |
| C26 | −0.1222 (7) | 0.24197 (16) | 0.0190 (6) | 0.0139 (9) | |
| C27 | −0.2368 (8) | 0.22101 (17) | −0.1630 (7) | 0.0191 (10) | |
| H27A | −0.3305 | 0.2424 | −0.2461 | 0.029* | |
| H27B | −0.3163 | 0.1961 | −0.1465 | 0.029* | |
| H27C | −0.1389 | 0.2107 | −0.2158 | 0.029* | |
| C28 | −0.0448 (7) | 0.22063 (16) | 0.1955 (6) | 0.0145 (9) | |
| C29 | −0.0575 (7) | 0.17779 (16) | 0.2429 (7) | 0.0143 (9) | |
| H29 | −0.1221 | 0.1577 | 0.1458 | 0.017* | |
| C30 | 0.0173 (7) | 0.16128 (16) | 0.4234 (7) | 0.0157 (9) | |
| C31 | 0.0040 (7) | 0.11672 (16) | 0.4739 (7) | 0.0180 (10) | |
| C32 | −0.0871 (8) | 0.07875 (17) | 0.3481 (7) | 0.0217 (10) | |
| H32A | −0.1830 | 0.0899 | 0.2278 | 0.026* | |
| H32B | −0.1672 | 0.0605 | 0.4011 | 0.026* | |
| C33 | 0.0764 (9) | 0.0507 (2) | 0.3185 (9) | 0.0298 (12) | |
| H33A | 0.0127 | 0.0240 | 0.2519 | 0.045* | |
| H33B | 0.1821 | 0.0428 | 0.4380 | 0.045* | |
| H33C | 0.1397 | 0.0671 | 0.2465 | 0.045* | |
| C34 | 0.0948 (8) | 0.11562 (17) | 0.6626 (7) | 0.0207 (11) | |
| C35 | 0.1192 (9) | 0.07653 (17) | 0.7743 (7) | 0.0216 (10) | |
| H35 | 0.0550 | 0.0506 | 0.7124 | 0.026* | |
| C36 | 0.1628 (8) | 0.15993 (17) | 0.7220 (7) | 0.0177 (10) | |
| C37 | 0.2647 (8) | 0.17179 (16) | 0.9098 (7) | 0.0194 (10) | |
| H37 | 0.2893 | 0.1486 | 0.9960 | 0.023* | |
Atomic displacement parameters (Å2) top| | U11 | U22 | U33 | U12 | U13 | U23 |
| O1 | 0.0238 (18) | 0.0243 (19) | 0.0161 (17) | 0.0037 (15) | 0.0096 (14) | 0.0056 (14) |
| O2 | 0.027 (2) | 0.025 (2) | 0.041 (2) | 0.0052 (16) | 0.0194 (18) | 0.0084 (17) |
| O3 | 0.0251 (19) | 0.0137 (17) | 0.0232 (19) | 0.0047 (14) | 0.0125 (15) | 0.0038 (14) |
| O4 | 0.0182 (16) | 0.0191 (18) | 0.0251 (18) | 0.0012 (14) | 0.0130 (14) | 0.0029 (14) |
| O5 | 0.0202 (17) | 0.0240 (19) | 0.0094 (16) | 0.0010 (14) | 0.0034 (13) | 0.0023 (13) |
| O6 | 0.052 (3) | 0.021 (2) | 0.023 (2) | −0.0026 (18) | 0.0138 (18) | 0.0042 (16) |
| N1 | 0.0177 (19) | 0.0155 (19) | 0.0128 (19) | 0.0002 (15) | 0.0068 (16) | 0.0017 (15) |
| N2 | 0.017 (2) | 0.012 (2) | 0.014 (2) | −0.0004 (15) | 0.0055 (16) | 0.0021 (15) |
| N3 | 0.0161 (19) | 0.0112 (19) | 0.0125 (19) | 0.0002 (15) | 0.0058 (16) | 0.0006 (15) |
| N4 | 0.0158 (19) | 0.016 (2) | 0.0136 (19) | −0.0003 (15) | 0.0080 (16) | 0.0009 (15) |
| C1 | 0.014 (2) | 0.018 (2) | 0.012 (2) | 0.0036 (18) | 0.0081 (17) | 0.0018 (17) |
| C2 | 0.014 (2) | 0.021 (2) | 0.012 (2) | 0.0024 (18) | 0.0078 (18) | 0.0013 (18) |
| C3 | 0.041 (3) | 0.024 (3) | 0.012 (2) | 0.000 (2) | 0.006 (2) | 0.002 (2) |
| C4 | 0.053 (4) | 0.032 (3) | 0.018 (3) | −0.008 (3) | −0.002 (3) | 0.006 (2) |
| C5 | 0.015 (2) | 0.020 (2) | 0.010 (2) | 0.0031 (18) | 0.0055 (18) | 0.0038 (17) |
| C6 | 0.016 (2) | 0.026 (3) | 0.010 (2) | 0.0034 (19) | 0.0058 (18) | −0.0005 (18) |
| C7 | 0.011 (2) | 0.016 (2) | 0.014 (2) | 0.0004 (17) | 0.0057 (17) | −0.0003 (17) |
| C8 | 0.011 (2) | 0.018 (2) | 0.009 (2) | −0.0013 (17) | 0.0034 (16) | 0.0002 (17) |
| C9 | 0.013 (2) | 0.018 (2) | 0.011 (2) | 0.0022 (18) | 0.0044 (17) | 0.0031 (17) |
| C10 | 0.017 (2) | 0.013 (2) | 0.009 (2) | −0.0014 (18) | 0.0048 (17) | −0.0019 (17) |
| C11 | 0.032 (3) | 0.014 (2) | 0.018 (2) | 0.002 (2) | 0.014 (2) | 0.0001 (18) |
| C12 | 0.016 (2) | 0.013 (2) | 0.014 (2) | 0.0024 (17) | 0.0089 (17) | 0.0027 (17) |
| C13 | 0.017 (2) | 0.015 (2) | 0.016 (2) | 0.0011 (18) | 0.0088 (18) | 0.0022 (17) |
| C14 | 0.023 (3) | 0.018 (2) | 0.013 (2) | −0.0040 (19) | 0.0049 (19) | 0.0009 (18) |
| C15 | 0.018 (2) | 0.015 (2) | 0.023 (2) | −0.0048 (18) | 0.0096 (19) | −0.0008 (19) |
| C16 | 0.024 (3) | 0.027 (3) | 0.020 (3) | 0.007 (2) | 0.007 (2) | 0.007 (2) |
| C17 | 0.027 (3) | 0.026 (3) | 0.037 (3) | 0.004 (2) | 0.015 (2) | 0.003 (2) |
| C18 | 0.014 (2) | 0.014 (2) | 0.014 (2) | 0.0047 (17) | 0.0060 (18) | 0.0012 (17) |
| C19 | 0.015 (2) | 0.015 (2) | 0.013 (2) | 0.0012 (17) | 0.0065 (17) | 0.0039 (17) |
| C20 | 0.015 (2) | 0.015 (2) | 0.010 (2) | 0.0020 (18) | 0.0054 (17) | 0.0009 (16) |
| C21 | 0.016 (2) | 0.009 (2) | 0.016 (2) | −0.0018 (17) | 0.0053 (17) | −0.0015 (17) |
| C22 | 0.022 (2) | 0.010 (2) | 0.028 (3) | 0.0020 (18) | 0.010 (2) | −0.0006 (19) |
| C23 | 0.014 (2) | 0.018 (2) | 0.016 (2) | 0.0022 (18) | 0.0062 (18) | −0.0001 (18) |
| C24 | 0.009 (2) | 0.019 (2) | 0.012 (2) | 0.0030 (17) | 0.0056 (17) | 0.0004 (17) |
| C25 | 0.009 (2) | 0.021 (2) | 0.015 (2) | 0.0041 (18) | 0.0054 (17) | 0.0026 (18) |
| C26 | 0.011 (2) | 0.019 (2) | 0.013 (2) | 0.0066 (18) | 0.0072 (18) | 0.0017 (18) |
| C27 | 0.019 (2) | 0.021 (3) | 0.016 (2) | −0.002 (2) | 0.0052 (19) | −0.0046 (19) |
| C28 | 0.009 (2) | 0.019 (2) | 0.015 (2) | 0.0037 (17) | 0.0051 (17) | −0.0012 (18) |
| C29 | 0.013 (2) | 0.013 (2) | 0.018 (2) | −0.0019 (17) | 0.0075 (18) | −0.0042 (18) |
| C30 | 0.014 (2) | 0.014 (2) | 0.022 (2) | −0.0014 (17) | 0.0100 (19) | −0.0038 (18) |
| C31 | 0.012 (2) | 0.019 (2) | 0.024 (3) | −0.0003 (18) | 0.0080 (19) | 0.001 (2) |
| C32 | 0.021 (2) | 0.018 (3) | 0.022 (3) | −0.001 (2) | 0.004 (2) | 0.000 (2) |
| C33 | 0.032 (3) | 0.026 (3) | 0.031 (3) | 0.002 (2) | 0.011 (2) | −0.007 (2) |
| C34 | 0.027 (3) | 0.017 (3) | 0.021 (2) | 0.000 (2) | 0.011 (2) | 0.0016 (19) |
| C35 | 0.033 (3) | 0.014 (2) | 0.022 (2) | −0.005 (2) | 0.015 (2) | 0.0004 (19) |
| C36 | 0.016 (2) | 0.016 (2) | 0.023 (2) | 0.0008 (18) | 0.0107 (19) | −0.0003 (19) |
| C37 | 0.030 (3) | 0.012 (2) | 0.018 (2) | 0.003 (2) | 0.011 (2) | 0.0032 (18) |
Geometric parameters (Å, °) top
| O1—C15 | 1.340 (6) | C13—H13A | 0.9900 |
| O1—C16 | 1.456 (6) | C13—H13B | 0.9900 |
| O2—C15 | 1.207 (6) | C14—C15 | 1.509 (7) |
| O3—C21 | 1.332 (6) | C14—H14A | 0.9900 |
| O3—C22 | 1.456 (6) | C14—H14B | 0.9900 |
| O4—C21 | 1.208 (6) | C16—C17 | 1.511 (8) |
| O5—C23 | 1.220 (6) | C16—H16A | 0.9900 |
| O6—C35 | 1.231 (7) | C16—H16B | 0.9900 |
| N1—C7 | 1.360 (6) | C17—H17A | 0.9800 |
| N1—C1 | 1.379 (6) | C17—H17B | 0.9800 |
| N1—H1N | 0.88 (3) | C17—H17C | 0.9800 |
| N2—C9 | 1.333 (6) | C18—C19 | 1.378 (6) |
| N2—C18 | 1.368 (6) | C19—C25 | 1.392 (7) |
| N3—C25 | 1.332 (6) | C19—C20 | 1.518 (6) |
| N3—C28 | 1.392 (6) | C20—C21 | 1.522 (6) |
| N3—H3N | 0.88 (3) | C20—C23 | 1.579 (6) |
| N4—C36 | 1.342 (6) | C20—H20 | 1.0000 |
| N4—C30 | 1.380 (6) | C22—H22A | 0.9800 |
| C1—C37 | 1.353 (7) | C22—H22B | 0.9800 |
| C1—C2 | 1.472 (6) | C22—H22C | 0.9800 |
| C2—C5 | 1.352 (7) | C23—C24 | 1.461 (7) |
| C2—C3 | 1.470 (7) | C24—C26 | 1.382 (7) |
| C3—C4 | 1.248 (9) | C24—C25 | 1.427 (6) |
| C3—H3 | 0.9500 | C26—C28 | 1.439 (6) |
| C4—H4A | 0.9500 | C26—C27 | 1.493 (7) |
| C4—H4B | 0.9500 | C27—H27A | 0.9800 |
| C5—C7 | 1.456 (6) | C27—H27B | 0.9800 |
| C5—C6 | 1.505 (7) | C27—H27C | 0.9800 |
| C6—H6A | 0.9800 | C28—C29 | 1.373 (7) |
| C6—H6B | 0.9800 | C29—C30 | 1.405 (7) |
| C6—H6C | 0.9800 | C29—H29 | 0.9500 |
| C7—C8 | 1.370 (7) | C30—C31 | 1.431 (7) |
| C8—C9 | 1.410 (6) | C31—C34 | 1.373 (7) |
| C8—H8 | 0.9500 | C31—C32 | 1.500 (7) |
| C9—C10 | 1.519 (7) | C32—C33 | 1.520 (8) |
| C10—C11 | 1.535 (7) | C32—H32A | 0.9900 |
| C10—C12 | 1.559 (6) | C32—H32B | 0.9900 |
| C10—H10 | 1.0000 | C33—H33A | 0.9800 |
| C11—H11A | 0.9800 | C33—H33B | 0.9800 |
| C11—H11B | 0.9800 | C33—H33C | 0.9800 |
| C11—H11C | 0.9800 | C34—C36 | 1.452 (7) |
| C12—C18 | 1.509 (7) | C34—C35 | 1.453 (7) |
| C12—C13 | 1.538 (6) | C35—H35 | 0.9500 |
| C12—H12 | 1.0000 | C36—C37 | 1.420 (7) |
| C13—C14 | 1.538 (7) | C37—H37 | 0.9500 |
| | | |
| C15—O1—C16 | 116.3 (4) | C16—C17—H17B | 109.5 |
| C21—O3—C22 | 114.4 (4) | H17A—C17—H17B | 109.5 |
| C7—N1—C1 | 112.2 (4) | C16—C17—H17C | 109.5 |
| C7—N1—H1N | 131 (6) | H17A—C17—H17C | 109.5 |
| C1—N1—H1N | 116 (6) | H17B—C17—H17C | 109.5 |
| C9—N2—C18 | 108.2 (4) | N2—C18—C19 | 121.0 (4) |
| C25—N3—C28 | 110.1 (4) | N2—C18—C12 | 113.3 (4) |
| C25—N3—H3N | 135 (4) | C19—C18—C12 | 125.7 (4) |
| C28—N3—H3N | 115 (4) | C18—C19—C25 | 126.5 (4) |
| C36—N4—C30 | 106.0 (4) | C18—C19—C20 | 126.3 (4) |
| C37—C1—N1 | 127.6 (4) | C25—C19—C20 | 107.2 (4) |
| C37—C1—C2 | 127.5 (4) | C19—C20—C21 | 112.0 (4) |
| N1—C1—C2 | 104.8 (4) | C19—C20—C23 | 104.5 (4) |
| C5—C2—C3 | 124.8 (5) | C21—C20—C23 | 110.4 (4) |
| C5—C2—C1 | 108.4 (4) | C19—C20—H20 | 109.9 |
| C3—C2—C1 | 126.8 (5) | C21—C20—H20 | 109.9 |
| C4—C3—C2 | 133.9 (5) | C23—C20—H20 | 109.9 |
| C4—C3—H3 | 113.0 | O4—C21—O3 | 124.3 (4) |
| C2—C3—H3 | 113.0 | O4—C21—C20 | 124.2 (4) |
| C3—C4—H4A | 120.0 | O3—C21—C20 | 111.5 (4) |
| C3—C4—H4B | 120.0 | O3—C22—H22A | 109.5 |
| H4A—C4—H4B | 120.0 | O3—C22—H22B | 109.5 |
| C2—C5—C7 | 108.3 (4) | H22A—C22—H22B | 109.5 |
| C2—C5—C6 | 126.6 (4) | O3—C22—H22C | 109.5 |
| C7—C5—C6 | 125.1 (4) | H22A—C22—H22C | 109.5 |
| C5—C6—H6A | 109.5 | H22B—C22—H22C | 109.5 |
| C5—C6—H6B | 109.5 | O5—C23—C24 | 130.4 (5) |
| H6A—C6—H6B | 109.5 | O5—C23—C20 | 123.4 (4) |
| C5—C6—H6C | 109.5 | C24—C23—C20 | 106.1 (4) |
| H6A—C6—H6C | 109.5 | C26—C24—C25 | 109.1 (4) |
| H6B—C6—H6C | 109.5 | C26—C24—C23 | 143.1 (4) |
| N1—C7—C8 | 126.7 (4) | C25—C24—C23 | 107.8 (4) |
| N1—C7—C5 | 106.2 (4) | N3—C25—C19 | 138.0 (5) |
| C8—C7—C5 | 127.1 (4) | N3—C25—C24 | 107.7 (4) |
| C7—C8—C9 | 127.2 (4) | C19—C25—C24 | 114.2 (4) |
| C7—C8—H8 | 116.4 | C24—C26—C28 | 105.5 (4) |
| C9—C8—H8 | 116.4 | C24—C26—C27 | 127.8 (4) |
| N2—C9—C8 | 124.2 (4) | C28—C26—C27 | 126.7 (4) |
| N2—C9—C10 | 114.0 (4) | C26—C27—H27A | 109.5 |
| C8—C9—C10 | 121.8 (4) | C26—C27—H27B | 109.5 |
| C9—C10—C11 | 113.2 (4) | H27A—C27—H27B | 109.5 |
| C9—C10—C12 | 101.7 (4) | C26—C27—H27C | 109.5 |
| C11—C10—C12 | 112.6 (4) | H27A—C27—H27C | 109.5 |
| C9—C10—H10 | 109.7 | H27B—C27—H27C | 109.5 |
| C11—C10—H10 | 109.7 | C29—C28—N3 | 121.6 (4) |
| C12—C10—H10 | 109.7 | C29—C28—C26 | 130.8 (4) |
| C10—C11—H11A | 109.5 | N3—C28—C26 | 107.6 (4) |
| C10—C11—H11B | 109.5 | C28—C29—C30 | 125.3 (4) |
| H11A—C11—H11B | 109.5 | C28—C29—H29 | 117.3 |
| C10—C11—H11C | 109.5 | C30—C29—H29 | 117.3 |
| H11A—C11—H11C | 109.5 | N4—C30—C29 | 123.3 (4) |
| H11B—C11—H11C | 109.5 | N4—C30—C31 | 111.1 (4) |
| C18—C12—C13 | 111.6 (4) | C29—C30—C31 | 125.6 (4) |
| C18—C12—C10 | 101.7 (4) | C34—C31—C30 | 105.7 (4) |
| C13—C12—C10 | 112.1 (4) | C34—C31—C32 | 126.8 (5) |
| C18—C12—H12 | 110.4 | C30—C31—C32 | 127.5 (5) |
| C13—C12—H12 | 110.4 | C31—C32—C33 | 112.3 (4) |
| C10—C12—H12 | 110.4 | C31—C32—H32A | 109.1 |
| C14—C13—C12 | 114.6 (4) | C33—C32—H32A | 109.1 |
| C14—C13—H13A | 108.6 | C31—C32—H32B | 109.1 |
| C12—C13—H13A | 108.6 | C33—C32—H32B | 109.1 |
| C14—C13—H13B | 108.6 | H32A—C32—H32B | 107.9 |
| C12—C13—H13B | 108.6 | C32—C33—H33A | 109.5 |
| H13A—C13—H13B | 107.6 | C32—C33—H33B | 109.5 |
| C15—C14—C13 | 111.7 (4) | H33A—C33—H33B | 109.5 |
| C15—C14—H14A | 109.3 | C32—C33—H33C | 109.5 |
| C13—C14—H14A | 109.3 | H33A—C33—H33C | 109.5 |
| C15—C14—H14B | 109.3 | H33B—C33—H33C | 109.5 |
| C13—C14—H14B | 109.3 | C31—C34—C36 | 106.6 (4) |
| H14A—C14—H14B | 107.9 | C31—C34—C35 | 124.9 (5) |
| O2—C15—O1 | 123.5 (5) | C36—C34—C35 | 128.5 (5) |
| O2—C15—C14 | 124.9 (5) | O6—C35—C34 | 126.2 (5) |
| O1—C15—C14 | 111.5 (4) | O6—C35—H35 | 116.9 |
| O1—C16—C17 | 111.5 (5) | C34—C35—H35 | 116.9 |
| O1—C16—H16A | 109.3 | N4—C36—C37 | 126.2 (5) |
| C17—C16—H16A | 109.3 | N4—C36—C34 | 110.6 (4) |
| O1—C16—H16B | 109.3 | C37—C36—C34 | 123.1 (5) |
| C17—C16—H16B | 109.3 | C1—C37—C36 | 128.7 (5) |
| H16A—C16—H16B | 108.0 | C1—C37—H37 | 115.7 |
| C16—C17—H17A | 109.5 | C36—C37—H37 | 115.7 |
| | | |
| C7—N1—C1—C37 | −177.9 (5) | C19—C20—C21—O3 | 147.9 (4) |
| C7—N1—C1—C2 | 0.6 (5) | C23—C20—C21—O3 | −96.1 (4) |
| C37—C1—C2—C5 | 178.4 (5) | C19—C20—C23—O5 | 178.5 (4) |
| N1—C1—C2—C5 | 0.0 (5) | C21—C20—C23—O5 | 58.0 (6) |
| C37—C1—C2—C3 | −4.1 (8) | C19—C20—C23—C24 | −2.4 (4) |
| N1—C1—C2—C3 | 177.5 (5) | C21—C20—C23—C24 | −122.9 (4) |
| C5—C2—C3—C4 | −173.5 (7) | O5—C23—C24—C26 | 0.1 (10) |
| C1—C2—C3—C4 | 9.4 (11) | C20—C23—C24—C26 | −178.9 (6) |
| C3—C2—C5—C7 | −178.1 (4) | O5—C23—C24—C25 | −178.6 (5) |
| C1—C2—C5—C7 | −0.5 (5) | C20—C23—C24—C25 | 2.3 (5) |
| C3—C2—C5—C6 | 4.8 (8) | C28—N3—C25—C19 | −179.8 (5) |
| C1—C2—C5—C6 | −177.7 (4) | C28—N3—C25—C24 | −0.9 (5) |
| C1—N1—C7—C8 | 179.9 (4) | C18—C19—C25—N3 | −0.8 (9) |
| C1—N1—C7—C5 | −0.9 (5) | C20—C19—C25—N3 | 178.8 (5) |
| C2—C5—C7—N1 | 0.9 (5) | C18—C19—C25—C24 | −179.7 (4) |
| C6—C5—C7—N1 | 178.1 (4) | C20—C19—C25—C24 | −0.1 (5) |
| C2—C5—C7—C8 | −179.9 (4) | C26—C24—C25—N3 | 0.1 (5) |
| C6—C5—C7—C8 | −2.7 (8) | C23—C24—C25—N3 | 179.3 (4) |
| N1—C7—C8—C9 | −3.0 (8) | C26—C24—C25—C19 | 179.3 (4) |
| C5—C7—C8—C9 | 178.0 (4) | C23—C24—C25—C19 | −1.5 (5) |
| C18—N2—C9—C8 | −179.1 (4) | C25—C24—C26—C28 | 0.7 (5) |
| C18—N2—C9—C10 | 1.7 (5) | C23—C24—C26—C28 | −178.1 (6) |
| C7—C8—C9—N2 | 0.3 (8) | C25—C24—C26—C27 | −179.8 (4) |
| C7—C8—C9—C10 | 179.4 (4) | C23—C24—C26—C27 | 1.5 (9) |
| N2—C9—C10—C11 | 113.3 (4) | C25—N3—C28—C29 | −178.2 (4) |
| C8—C9—C10—C11 | −65.9 (6) | C25—N3—C28—C26 | 1.3 (5) |
| N2—C9—C10—C12 | −7.8 (5) | C24—C26—C28—C29 | 178.3 (5) |
| C8—C9—C10—C12 | 173.0 (4) | C27—C26—C28—C29 | −1.3 (8) |
| C9—C10—C12—C18 | 9.8 (4) | C24—C26—C28—N3 | −1.2 (5) |
| C11—C10—C12—C18 | −111.7 (4) | C27—C26—C28—N3 | 179.2 (4) |
| C9—C10—C12—C13 | −109.5 (4) | N3—C28—C29—C30 | 2.5 (7) |
| C11—C10—C12—C13 | 129.0 (4) | C26—C28—C29—C30 | −176.9 (4) |
| C18—C12—C13—C14 | 177.9 (4) | C36—N4—C30—C29 | 179.8 (4) |
| C10—C12—C13—C14 | −68.7 (5) | C36—N4—C30—C31 | −0.2 (5) |
| C12—C13—C14—C15 | −68.1 (5) | C28—C29—C30—N4 | −0.2 (7) |
| C16—O1—C15—O2 | −1.7 (7) | C28—C29—C30—C31 | 179.8 (5) |
| C16—O1—C15—C14 | 176.1 (4) | N4—C30—C31—C34 | 0.4 (6) |
| C13—C14—C15—O2 | 70.4 (7) | C29—C30—C31—C34 | −179.6 (5) |
| C13—C14—C15—O1 | −107.3 (5) | N4—C30—C31—C32 | −178.9 (5) |
| C15—O1—C16—C17 | 81.0 (6) | C29—C30—C31—C32 | 1.1 (8) |
| C9—N2—C18—C19 | −175.3 (4) | C34—C31—C32—C33 | −78.8 (7) |
| C9—N2—C18—C12 | 5.7 (5) | C30—C31—C32—C33 | 100.3 (6) |
| C13—C12—C18—N2 | 109.5 (4) | C30—C31—C34—C36 | −0.4 (5) |
| C10—C12—C18—N2 | −10.2 (5) | C32—C31—C34—C36 | 178.8 (5) |
| C13—C12—C18—C19 | −69.4 (6) | C30—C31—C34—C35 | −178.9 (5) |
| C10—C12—C18—C19 | 170.9 (4) | C32—C31—C34—C35 | 0.3 (9) |
| N2—C18—C19—C25 | −5.0 (7) | C31—C34—C35—O6 | 173.3 (6) |
| C12—C18—C19—C25 | 173.9 (4) | C36—C34—C35—O6 | −4.9 (9) |
| N2—C18—C19—C20 | 175.5 (4) | C30—N4—C36—C37 | −179.8 (5) |
| C12—C18—C19—C20 | −5.6 (7) | C30—N4—C36—C34 | −0.1 (5) |
| C18—C19—C20—C21 | −59.4 (6) | C31—C34—C36—N4 | 0.3 (6) |
| C25—C19—C20—C21 | 121.0 (4) | C35—C34—C36—N4 | 178.8 (5) |
| C18—C19—C20—C23 | −178.9 (4) | C31—C34—C36—C37 | −180.0 (5) |
| C25—C19—C20—C23 | 1.5 (5) | C35—C34—C36—C37 | −1.5 (8) |
| C22—O3—C21—O4 | 1.7 (7) | N1—C1—C37—C36 | −0.3 (9) |
| C22—O3—C21—C20 | −177.6 (4) | C2—C1—C37—C36 | −178.4 (5) |
| C19—C20—C21—O4 | −31.4 (6) | N4—C36—C37—C1 | 1.1 (9) |
| C23—C20—C21—O4 | 84.6 (5) | C34—C36—C37—C1 | −178.6 (5) |
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1N···N2 | 0.88 (3) | 2.48 (9) | 2.915 (6) | 111 (7) |
| N1—H1N···N4 | 0.88 (3) | 2.42 (8) | 3.033 (6) | 127 (8) |
| N3—H3N···N4 | 0.88 (3) | 1.99 (4) | 2.713 (5) | 139 (5) |
Table 1
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1N···N2 | 0.88 (3) | 2.48 (9) | 2.915 (6) | 111 (7) |
| N1—H1N···N4 | 0.88 (3) | 2.42 (8) | 3.033 (6) | 127 (8) |
| N3—H3N···N4 | 0.88 (3) | 1.99 (4) | 2.713 (5) | 139 (5) |
We thank the University of Malaya (grant No. PS149/2007B) for supporting this
study.
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