supplementary materials


Acta Cryst. (2009). E65, o51    [ doi:10.1107/S1600536808040932 ]

Ethyl {6-[6-(ethoxycarbonyl)picolinamidocarbonyl]picolinamidocarbonyl}picolinate

X. Li, Y. Wang, C. Zhan and J. Yao

Abstract top

The title molecule, C25H21N5O8, adopts a helical conformation, which is stabilized by two intramolecular bifurcated N-H...(N,N) hydrogen bonds.

Comment top

The stucture of the title compound is shown in Fig. 1. Dimensions are available in the archived CIF. The hydrogen bonds are listed in Table 1. For background, see for example: Huc (2004). For related compounds, see: Li et al. (2008).

Related literature top

For a review on aromatic oligoamides (AOAs), see, for example: Huc (2004). For related compounds, see: Li et al. (2008).

Experimental top

The title compound was obtained from 2-ethoxycarbonyl- 6-pyridinoyl amide and 2,6-pyridinoyl dichloride and recrystallised from DMF/ethyl ether to yield colourless prisms of (I).

Refinement top

The N-bound hydrogen atoms were located in a difference map and freely refined. The C-bound hydrogen atoms were geometrically placed (C—H = 0.95–0.99Å) and refined as riding with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).

Computing details top

Data collection: CrystalClear (Rigaku, 1999); cell refinement: CrystalClear (Rigaku, 1999); data reduction: CrystalClear (Rigaku, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: CrystalStructure (Rigaku, 1999).

Figures top
[Figure 1] Fig. 1. The molecular structure of (I) showing 50% displacement ellipsoids for the non-hydrogen atoms. The hydrogen bonds are shown as double-dashed lines.
[Figure 2] Fig. 2. The formation of the title compound.
Ethyl {6-[6-(ethoxycarbonyl)picolinamidocarbonyl]picolinamidocarbonyl}picolinate top
Crystal data top
C25H21N5O8F(000) = 1080
Mr = 519.47Dx = 1.448 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 6439 reflections
a = 7.4952 (8) Åθ = 2.6–26.0°
b = 19.998 (2) ŵ = 0.11 mm1
c = 15.9966 (17) ÅT = 113 K
β = 96.376 (1)°Prism, colorless
V = 2382.8 (4) Å30.32 × 0.22 × 0.18 mm
Z = 4
Data collection top
Rigaku Saturn
diffractometer
6101 independent reflections
Radiation source: rotating anode5457 reflections with I > 2σ(I)
confocalRint = 0.025
Detector resolution: 7.31 pixels mm-1θmax = 28.7°, θmin = 2.4°
ω scansh = 1010
Absorption correction: multi-scan
(CrystalcClear; Rigaku, 1999)
k = 2724
Tmin = 0.966, Tmax = 0.980l = 2121
30537 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 1.08 w = 1/[σ2(Fo2) + (0.0481P)2 + 0.4996P]
where P = (Fo2 + 2Fc2)/3
6101 reflections(Δ/σ)max = 0.001
354 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = 0.17 e Å3
Crystal data top
C25H21N5O8V = 2382.8 (4) Å3
Mr = 519.47Z = 4
Monoclinic, P21/cMo Kα radiation
a = 7.4952 (8) ŵ = 0.11 mm1
b = 19.998 (2) ÅT = 113 K
c = 15.9966 (17) Å0.32 × 0.22 × 0.18 mm
β = 96.376 (1)°
Data collection top
Rigaku Saturn
diffractometer
6101 independent reflections
Absorption correction: multi-scan
(CrystalcClear; Rigaku, 1999)
5457 reflections with I > 2σ(I)
Tmin = 0.966, Tmax = 0.980Rint = 0.025
30537 measured reflectionsθmax = 28.7°
Refinement top
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.096Δρmax = 0.32 e Å3
S = 1.08Δρmin = 0.17 e Å3
6101 reflectionsAbsolute structure: ?
354 parametersFlack parameter: ?
0 restraintsRogers parameter: ?
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.13320 (11)0.87694 (4)0.72665 (5)0.02977 (17)
O20.06124 (11)0.85871 (4)0.63149 (5)0.02910 (17)
O30.16781 (12)0.59423 (4)0.88294 (6)0.0395 (2)
O40.33384 (11)0.65393 (4)1.02334 (5)0.03521 (19)
O50.24510 (13)0.99672 (4)0.94666 (5)0.0397 (2)
O60.08420 (13)1.00415 (4)0.86648 (5)0.0391 (2)
O70.21781 (10)0.70449 (4)0.93765 (4)0.02615 (16)
O80.37042 (9)0.67410 (4)0.82982 (4)0.02587 (16)
N10.10247 (10)0.74283 (4)0.76977 (5)0.02135 (16)
N20.21026 (12)0.70511 (4)0.91366 (5)0.02446 (18)
N30.25843 (11)0.82284 (4)0.97648 (5)0.02253 (17)
N40.04508 (12)0.91296 (4)0.92339 (5)0.02641 (18)
N50.20551 (11)0.83332 (4)0.87730 (5)0.02099 (16)
C10.04508 (13)0.83975 (5)0.68831 (6)0.02336 (19)
C20.03851 (12)0.76501 (5)0.70001 (6)0.02167 (19)
C30.02896 (13)0.72245 (5)0.64172 (6)0.0245 (2)
H30.07640.74000.59360.029*
C40.02507 (13)0.65399 (5)0.65576 (6)0.0264 (2)
H4A0.06570.62370.61620.032*
C50.03894 (13)0.63047 (5)0.72829 (7)0.0262 (2)
H50.04190.58390.73980.031*
C60.09874 (12)0.67674 (5)0.78370 (6)0.02280 (19)
C70.16141 (13)0.65290 (5)0.86502 (7)0.0260 (2)
C80.29462 (13)0.70359 (5)0.98611 (6)0.0248 (2)
C90.34013 (13)0.77315 (5)1.01301 (6)0.0241 (2)
C100.46393 (14)0.78407 (7)1.07012 (7)0.0334 (2)
H100.51800.74781.09610.040*
C110.50571 (15)0.84953 (7)1.08782 (8)0.0400 (3)
H110.59040.85881.12630.048*
C120.42408 (15)0.90164 (6)1.04950 (7)0.0353 (3)
H120.45300.94681.06030.042*
C130.29831 (14)0.88586 (5)0.99470 (6)0.0263 (2)
C140.19693 (15)0.93888 (5)0.95273 (6)0.0287 (2)
C150.08115 (15)0.94475 (5)0.88163 (6)0.0272 (2)
C160.22015 (13)0.89727 (5)0.85479 (6)0.0240 (2)
C170.35075 (15)0.92050 (6)0.80694 (7)0.0318 (2)
H170.35870.96670.79390.038*
C180.46885 (15)0.87489 (6)0.77877 (8)0.0350 (3)
H180.56030.88920.74620.042*
C190.45178 (14)0.80778 (6)0.79891 (7)0.0290 (2)
H190.52860.77510.77880.035*
C200.31961 (12)0.78940 (5)0.84913 (6)0.02153 (19)
C210.29545 (12)0.71868 (5)0.87815 (6)0.02146 (19)
C220.06263 (18)0.92999 (5)0.61175 (7)0.0342 (2)
H22A0.08270.95680.66400.041*
H22B0.05320.94350.58060.041*
C230.2126 (2)0.94046 (6)0.55884 (9)0.0482 (4)
H23A0.32670.92820.59120.072*
H23B0.21630.98760.54230.072*
H23C0.19310.91240.50840.072*
C240.35652 (15)0.60428 (5)0.85650 (7)0.0275 (2)
H24A0.23150.59410.86660.033*
H24B0.43560.59650.90940.033*
C250.41238 (17)0.56010 (6)0.78771 (7)0.0352 (2)
H25A0.32900.56620.73660.053*
H25B0.41040.51330.80560.053*
H25C0.53410.57210.77620.053*
H40.0313 (18)0.8692 (7)0.9284 (8)0.036 (4)*
H20.1908 (19)0.7449 (8)0.8932 (9)0.040 (4)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0356 (4)0.0277 (4)0.0269 (4)0.0077 (3)0.0077 (3)0.0011 (3)
O20.0378 (4)0.0242 (4)0.0268 (4)0.0026 (3)0.0104 (3)0.0007 (3)
O30.0507 (5)0.0201 (4)0.0503 (5)0.0036 (3)0.0176 (4)0.0003 (3)
O40.0350 (4)0.0360 (4)0.0355 (4)0.0062 (3)0.0075 (3)0.0099 (3)
O50.0549 (5)0.0247 (4)0.0386 (5)0.0185 (4)0.0005 (4)0.0020 (3)
O60.0650 (6)0.0165 (4)0.0358 (4)0.0003 (4)0.0059 (4)0.0058 (3)
O70.0308 (4)0.0222 (4)0.0266 (4)0.0031 (3)0.0085 (3)0.0035 (3)
O80.0267 (4)0.0239 (4)0.0280 (4)0.0045 (3)0.0076 (3)0.0009 (3)
N10.0193 (4)0.0215 (4)0.0231 (4)0.0004 (3)0.0013 (3)0.0035 (3)
N20.0272 (4)0.0203 (4)0.0269 (4)0.0018 (3)0.0075 (3)0.0004 (3)
N30.0231 (4)0.0256 (4)0.0186 (4)0.0055 (3)0.0007 (3)0.0008 (3)
N40.0374 (5)0.0147 (4)0.0277 (4)0.0050 (3)0.0059 (3)0.0009 (3)
N50.0218 (4)0.0188 (4)0.0218 (4)0.0021 (3)0.0004 (3)0.0022 (3)
C10.0249 (5)0.0267 (5)0.0179 (4)0.0022 (4)0.0001 (3)0.0014 (3)
C20.0187 (4)0.0245 (5)0.0211 (4)0.0011 (3)0.0011 (3)0.0036 (3)
C30.0209 (4)0.0301 (5)0.0218 (4)0.0016 (4)0.0001 (3)0.0058 (4)
C40.0223 (4)0.0286 (5)0.0278 (5)0.0021 (4)0.0002 (4)0.0109 (4)
C50.0234 (5)0.0220 (5)0.0325 (5)0.0012 (4)0.0005 (4)0.0084 (4)
C60.0194 (4)0.0218 (5)0.0269 (5)0.0022 (3)0.0013 (3)0.0053 (4)
C70.0241 (5)0.0208 (5)0.0334 (5)0.0028 (4)0.0052 (4)0.0024 (4)
C80.0197 (4)0.0309 (5)0.0239 (5)0.0021 (4)0.0020 (3)0.0026 (4)
C90.0190 (4)0.0340 (5)0.0189 (4)0.0008 (4)0.0009 (3)0.0006 (4)
C100.0233 (5)0.0522 (7)0.0254 (5)0.0044 (5)0.0061 (4)0.0067 (5)
C110.0255 (5)0.0603 (8)0.0357 (6)0.0018 (5)0.0099 (4)0.0177 (6)
C120.0280 (5)0.0441 (7)0.0332 (6)0.0112 (5)0.0014 (4)0.0141 (5)
C130.0260 (5)0.0299 (5)0.0218 (4)0.0099 (4)0.0017 (4)0.0048 (4)
C140.0375 (6)0.0245 (5)0.0231 (5)0.0103 (4)0.0013 (4)0.0029 (4)
C150.0412 (6)0.0179 (4)0.0219 (4)0.0010 (4)0.0004 (4)0.0022 (3)
C160.0281 (5)0.0200 (5)0.0230 (4)0.0040 (4)0.0017 (4)0.0036 (3)
C170.0330 (5)0.0279 (5)0.0338 (5)0.0085 (4)0.0005 (4)0.0108 (4)
C180.0250 (5)0.0423 (7)0.0383 (6)0.0051 (4)0.0060 (4)0.0166 (5)
C190.0203 (4)0.0365 (6)0.0304 (5)0.0028 (4)0.0040 (4)0.0096 (4)
C200.0183 (4)0.0236 (5)0.0220 (4)0.0000 (3)0.0007 (3)0.0037 (3)
C210.0180 (4)0.0229 (5)0.0229 (4)0.0024 (3)0.0001 (3)0.0015 (3)
C220.0510 (7)0.0238 (5)0.0287 (5)0.0041 (5)0.0082 (5)0.0031 (4)
C230.0808 (10)0.0273 (6)0.0419 (7)0.0084 (6)0.0309 (7)0.0045 (5)
C240.0320 (5)0.0221 (5)0.0288 (5)0.0063 (4)0.0056 (4)0.0017 (4)
C250.0420 (6)0.0298 (6)0.0350 (6)0.0093 (5)0.0095 (5)0.0033 (4)
Geometric parameters (Å, °) top
O1—C11.2064 (12)C8—C91.5063 (15)
O2—C11.3289 (12)C9—C101.3898 (14)
O2—C221.4603 (13)C10—C111.3825 (18)
O3—C71.2100 (13)C10—H100.9500
O4—C81.2109 (13)C11—C121.3854 (19)
O5—C141.2123 (13)C11—H110.9500
O6—C151.2131 (13)C12—C131.3930 (15)
O7—C211.2034 (12)C12—H120.9500
O8—C211.3434 (12)C13—C141.5052 (16)
O8—C241.4671 (12)C15—C161.5068 (15)
N1—C21.3382 (13)C16—C171.3880 (15)
N1—C61.3401 (13)C17—C181.3809 (17)
N2—C71.3760 (13)C17—H170.9500
N2—C81.3809 (13)C18—C191.3893 (16)
N2—H20.878 (15)C18—H180.9500
N3—C131.3348 (13)C19—C201.3924 (14)
N3—C91.3354 (13)C19—H190.9500
N4—C151.3732 (14)C20—C211.5057 (13)
N4—C141.3796 (14)C22—C231.4949 (18)
N4—H40.885 (14)C22—H22A0.9900
N5—C161.3364 (12)C22—H22B0.9900
N5—C201.3384 (13)C23—H23A0.9800
C1—C21.5064 (14)C23—H23B0.9800
C2—C31.3979 (13)C23—H23C0.9800
C3—C41.3882 (15)C24—C251.5064 (14)
C3—H30.9500C24—H24A0.9900
C4—C51.3859 (15)C24—H24B0.9900
C4—H4A0.9500C25—H25A0.9800
C5—C61.3895 (14)C25—H25B0.9800
C5—H50.9500C25—H25C0.9800
C6—C71.5086 (14)
C1—O2—C22116.47 (8)C12—C13—C14122.10 (10)
C21—O8—C24114.60 (8)O5—C14—N4125.50 (11)
C2—N1—C6117.56 (8)O5—C14—C13123.18 (10)
C7—N2—C8129.30 (9)N4—C14—C13111.32 (8)
C7—N2—H2114.2 (9)O6—C15—N4125.43 (11)
C8—N2—H2116.3 (9)O6—C15—C16122.08 (10)
C13—N3—C9118.83 (9)N4—C15—C16112.49 (8)
C15—N4—C14129.10 (9)N5—C16—C17123.57 (10)
C15—N4—H4115.0 (9)N5—C16—C15116.50 (9)
C14—N4—H4115.7 (9)C17—C16—C15119.90 (9)
C16—N5—C20117.56 (9)C18—C17—C16118.41 (10)
O1—C1—O2125.14 (10)C18—C17—H17120.8
O1—C1—C2124.11 (9)C16—C17—H17120.8
O2—C1—C2110.75 (8)C17—C18—C19118.91 (10)
N1—C2—C3122.96 (9)C17—C18—H18120.5
N1—C2—C1114.99 (8)C19—C18—H18120.5
C3—C2—C1122.04 (9)C18—C19—C20118.59 (10)
C4—C3—C2118.48 (10)C18—C19—H19120.7
C4—C3—H3120.8C20—C19—H19120.7
C2—C3—H3120.8N5—C20—C19122.90 (9)
C5—C4—C3119.04 (9)N5—C20—C21114.16 (8)
C5—C4—H4A120.5C19—C20—C21122.92 (9)
C3—C4—H4A120.5O7—C21—O8124.66 (9)
C4—C5—C6118.31 (10)O7—C21—C20123.41 (9)
C4—C5—H5120.8O8—C21—C20111.94 (8)
C6—C5—H5120.8O2—C22—C23106.44 (9)
N1—C6—C5123.57 (9)O2—C22—H22A110.4
N1—C6—C7116.89 (8)C23—C22—H22A110.4
C5—C6—C7119.53 (9)O2—C22—H22B110.4
O3—C7—N2125.58 (10)C23—C22—H22B110.4
O3—C7—C6122.35 (9)H22A—C22—H22B108.6
N2—C7—C6112.06 (8)C22—C23—H23A109.5
O4—C8—N2126.13 (10)C22—C23—H23B109.5
O4—C8—C9122.81 (9)H23A—C23—H23B109.5
N2—C8—C9111.02 (8)C22—C23—H23C109.5
N3—C9—C10122.87 (10)H23A—C23—H23C109.5
N3—C9—C8115.64 (8)H23B—C23—H23C109.5
C10—C9—C8121.45 (10)O8—C24—C25108.13 (8)
C11—C10—C9117.80 (11)O8—C24—H24A110.1
C11—C10—H10121.1C25—C24—H24A110.1
C9—C10—H10121.1O8—C24—H24B110.1
C10—C11—C12120.02 (10)C25—C24—H24B110.1
C10—C11—H11120.0H24A—C24—H24B108.4
C12—C11—H11120.0C24—C25—H25A109.5
C11—C12—C13118.10 (11)C24—C25—H25B109.5
C11—C12—H12121.0H25A—C25—H25B109.5
C13—C12—H12121.0C24—C25—H25C109.5
N3—C13—C12122.34 (11)H25A—C25—H25C109.5
N3—C13—C14115.55 (9)H25B—C25—H25C109.5
C22—O2—C1—O13.25 (15)C9—N3—C13—C120.98 (14)
C22—O2—C1—C2177.85 (8)C9—N3—C13—C14178.44 (8)
C6—N1—C2—C30.73 (13)C11—C12—C13—N31.89 (16)
C6—N1—C2—C1179.54 (8)C11—C12—C13—C14177.48 (10)
O1—C1—C2—N115.36 (14)C15—N4—C14—O50.58 (18)
O2—C1—C2—N1163.55 (8)C15—N4—C14—C13179.72 (9)
O1—C1—C2—C3164.37 (10)N3—C13—C14—O5162.22 (10)
O2—C1—C2—C316.71 (12)C12—C13—C14—O518.36 (16)
N1—C2—C3—C41.73 (14)N3—C13—C14—N418.07 (12)
C1—C2—C3—C4177.98 (8)C12—C13—C14—N4161.35 (9)
C2—C3—C4—C52.40 (14)C14—N4—C15—O63.77 (18)
C3—C4—C5—C60.72 (14)C14—N4—C15—C16175.83 (9)
C2—N1—C6—C52.58 (14)C20—N5—C16—C172.57 (14)
C2—N1—C6—C7176.59 (8)C20—N5—C16—C15175.38 (8)
C4—C5—C6—N11.87 (15)O6—C15—C16—N5178.10 (10)
C4—C5—C6—C7177.27 (9)N4—C15—C16—N52.29 (12)
C8—N2—C7—O38.40 (18)O6—C15—C16—C173.88 (15)
C8—N2—C7—C6170.93 (9)N4—C15—C16—C17175.74 (9)
N1—C6—C7—O3178.12 (10)N5—C16—C17—C182.05 (16)
C5—C6—C7—O32.68 (15)C15—C16—C17—C18175.83 (10)
N1—C6—C7—N21.24 (12)C16—C17—C18—C190.37 (16)
C5—C6—C7—N2177.96 (9)C17—C18—C19—C202.07 (16)
C7—N2—C8—O44.13 (18)C16—N5—C20—C190.70 (14)
C7—N2—C8—C9173.76 (9)C16—N5—C20—C21179.34 (8)
C13—N3—C9—C100.73 (14)C18—C19—C20—N51.58 (15)
C13—N3—C9—C8177.19 (8)C18—C19—C20—C21176.94 (9)
O4—C8—C9—N3167.30 (9)C24—O8—C21—O71.92 (13)
N2—C8—C9—N314.72 (12)C24—O8—C21—C20178.12 (8)
O4—C8—C9—C1014.75 (15)N5—C20—C21—O719.00 (13)
N2—C8—C9—C10163.23 (9)C19—C20—C21—O7159.64 (10)
N3—C9—C10—C111.43 (15)N5—C20—C21—O8160.96 (8)
C8—C9—C10—C11176.37 (10)C19—C20—C21—O820.40 (13)
C9—C10—C11—C120.44 (17)C1—O2—C22—C23170.48 (10)
C10—C11—C12—C131.12 (17)C21—O8—C24—C25168.94 (8)
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
N4—H4···N30.885 (14)2.153 (14)2.6131 (13)111.7 (11)
N4—H4···N50.885 (14)2.158 (14)2.6297 (12)112.8 (11)
N2—H2···N30.878 (15)2.148 (14)2.6006 (12)111.4 (11)
N2—H2···N10.878 (15)2.151 (14)2.6329 (12)114.0 (11)
Table 1
Hydrogen-bond geometry (Å, °)
top
D—H···AD—HH···AD···AD—H···A
N4—H4···N30.885 (14)2.153 (14)2.6131 (13)111.7 (11)
N4—H4···N50.885 (14)2.158 (14)2.6297 (12)112.8 (11)
N2—H2···N30.878 (15)2.148 (14)2.6006 (12)111.4 (11)
N2—H2···N10.878 (15)2.151 (14)2.6329 (12)114.0 (11)
Acknowledgements top

We thank the NSFC (Nos. 50221201, 20872145, 20733006), the Chinese Academy of Sciences and the National Research Fund for Fundamental Key Project 973 (2006CB806200, 2007CB936401) for support.

references
References top

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