Acta Cryst. (2009). E65, m2-m3 [ doi:10.1107/S1600536808039378 ]
The title compound, [Ni(C7H3NO4)(C12H8N2)(H2O)]·C7H5NO4·4H2O or [Ni(pydc)(phen)(H2O)].pydcH2·4H2O, was obtained by the reaction of nickel(II) nitrate hexahydrate with the proton-transfer compound (phenH)2(pydc) (phen is 1,10-phenanothroline and pydcH2 is pyridine-2,6-dicarboxylic acid) in aqueous solution. Both the cationic and anionic portions of the starting proton-transfer compound are involved in the complexation. The NiII atom has a distorted octahedral geometry and is hexacoordinated by three O atoms and three N atoms from one phen fragment (as a bidentate ligand), one (pydc)2- unit (as a tridentate ligand) and one water molecule. In the crystal structure, extensive O-H
O, O-H
N and C-H
O hydrogen bonds with D
A distances ranging from 2.573 (2) to 3.385 (2) Å,
-
interactions between the phen ring systems [with centroid-centroid distances of 3.4694 (12), 3.4781 (11) and 3.8310 (11) Å] and intermolecular C-O
interactions [C
distances of 3.4812 (17), 3.5784 (16) and 3.5926 (16) Å] connect the various components together.
The proton transfer ion pair was prepared by a reaction between phen and pydcH2. A solution of Ni(NO3)2.6H2O (143 mg, 0.5 mmol) in water (15 ml) was added to an aqueous solution of (phenH)2(pydc) (244 mg, 1 mmol) in water (15 ml) in a 1:2 molar ratio. Blue crystals of the title compound suitable for X-ray characterization were obtained after a few days at room temperature.
Hydrogen atoms of hydroxo groups and water molecules were located from the difference Fourier syntheses. The H(C) atoms were placed in geometrically calculated positions. Hydroxo O—H distances were set to 0.84 Å and C—H distances were set to 0.95 Å. Water O—H distances were normalized to 0.85 Å and the hydrogen positions were not further refined. Other hydrogen atom positions were refined with a riding model with the Uĩso~(H) parameters equal to 1.2Ueq(O) for hydroxo groups, 1.2Ueq(C) for bonded carbon atoms and to 1.5Ueq(O) for water molecules where U~eq~(C) and U~eq~(O) are the equivalent isotropic thermal parameters of the atoms to which corresponding H atoms are bonded.
Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
| [Ni(C7H3NO4)(C12H8N2)(H2O)]·C7H5NO4·4H2O | Z = 2 |
| Mr = 661.22 | F(000) = 684 |
| Triclinic, P1 | Dx = 1.622 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 9.9454 (7) Å | Cell parameters from 2738 reflections |
| b = 11.3524 (7) Å | θ = 2.6–34.7° |
| c = 12.7687 (10) Å | µ = 0.80 mm−1 |
| α = 76.527 (2)° | T = 100 K |
| β = 81.252 (2)° | Prism, blue |
| γ = 76.131 (2)° | 0.41 × 0.32 × 0.26 mm |
| V = 1354.00 (17) Å3 |
| Bruker SMART APEXII diffractometer | 6485 independent reflections |
| Radiation source: fine-focus sealed tube | 5910 reflections with I > 2σ(I) |
| graphite | Rint = 0.023 |
| ω scans | θmax = 28.0°, θmin = 1.7° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −13→13 |
| Tmin = 0.736, Tmax = 0.820 | k = −14→14 |
| 14769 measured reflections | l = −16→16 |
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: mixed |
| wR(F2) = 0.092 | H-atom parameters constrained |
| S = 1.01 | w = 1/[σ2(Fo2) + (0.04P)2 + 1.76P] where P = (Fo2 + 2Fc2)/3 |
| 6485 reflections | (Δ/σ)max < 0.001 |
| 397 parameters | Δρmax = 0.47 e Å−3 |
| 0 restraints | Δρmin = −0.51 e Å−3 |
| [Ni(C7H3NO4)(C12H8N2)(H2O)]·C7H5NO4·4H2O | γ = 76.131 (2)° |
| Mr = 661.22 | V = 1354.00 (17) Å3 |
| Triclinic, P1 | Z = 2 |
| a = 9.9454 (7) Å | Mo Kα radiation |
| b = 11.3524 (7) Å | µ = 0.80 mm−1 |
| c = 12.7687 (10) Å | T = 100 K |
| α = 76.527 (2)° | 0.41 × 0.32 × 0.26 mm |
| β = 81.252 (2)° |
| Bruker SMART APEXII diffractometer | 6485 independent reflections |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 5910 reflections with I > 2σ(I) |
| Tmin = 0.736, Tmax = 0.820 | Rint = 0.023 |
| 14769 measured reflections | θmax = 28.0° |
| R[F2 > 2σ(F2)] = 0.034 | H-atom parameters constrained |
| wR(F2) = 0.092 | Δρmax = 0.47 e Å−3 |
| S = 1.01 | Δρmin = −0.51 e Å−3 |
| 6485 reflections | Absolute structure: ? |
| 397 parameters | Flack parameter: ? |
| 0 restraints | Rogers parameter: ? |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| x | y | z | Uiso*/Ueq | ||
| Ni1 | 0.14557 (2) | 0.61408 (2) | 0.219863 (18) | 0.01073 (7) | |
| O1 | 0.27282 (14) | 0.74827 (12) | 0.17880 (10) | 0.0147 (3) | |
| O2 | 0.42638 (15) | 0.81778 (13) | 0.24813 (11) | 0.0200 (3) | |
| O3 | 0.06221 (13) | 0.46491 (12) | 0.32080 (10) | 0.0135 (3) | |
| O4 | 0.07765 (14) | 0.33692 (12) | 0.48273 (11) | 0.0154 (3) | |
| O5 | 0.32914 (16) | 1.18635 (13) | 0.32094 (11) | 0.0203 (3) | |
| H5A | 0.2927 | 1.1262 | 0.3229 | 0.024* | |
| O6 | 0.43646 (15) | 1.24853 (13) | 0.43060 (12) | 0.0204 (3) | |
| O7 | 0.08261 (14) | 0.88178 (12) | 0.42880 (11) | 0.0163 (3) | |
| O8 | 0.06159 (14) | 0.77645 (12) | 0.59989 (11) | 0.0171 (3) | |
| H8A | 0.0140 | 0.7401 | 0.5742 | 0.021* | |
| N1 | 0.23864 (15) | 0.58307 (14) | 0.35305 (12) | 0.0116 (3) | |
| N2 | 0.05900 (16) | 0.65260 (14) | 0.07697 (12) | 0.0129 (3) | |
| N3 | 0.29117 (16) | 0.49314 (14) | 0.13877 (12) | 0.0127 (3) | |
| N4 | 0.24313 (16) | 1.01566 (14) | 0.48213 (12) | 0.0134 (3) | |
| C1 | 0.32172 (18) | 0.65734 (16) | 0.35902 (14) | 0.0121 (3) | |
| C2 | 0.37457 (19) | 0.65049 (17) | 0.45478 (15) | 0.0146 (3) | |
| H2A | 0.4327 | 0.7041 | 0.4592 | 0.018* | |
| C3 | 0.33980 (19) | 0.56227 (18) | 0.54497 (15) | 0.0155 (4) | |
| H3A | 0.3740 | 0.5560 | 0.6120 | 0.019* | |
| C4 | 0.25558 (19) | 0.48366 (17) | 0.53718 (15) | 0.0139 (3) | |
| H4B | 0.2330 | 0.4222 | 0.5975 | 0.017* | |
| C5 | 0.20561 (18) | 0.49817 (16) | 0.43806 (14) | 0.0116 (3) | |
| C6 | 0.34375 (19) | 0.74912 (16) | 0.25348 (15) | 0.0137 (3) | |
| C7 | 0.10751 (18) | 0.42734 (16) | 0.41213 (14) | 0.0118 (3) | |
| C8 | −0.05952 (19) | 0.72987 (17) | 0.04897 (15) | 0.0152 (3) | |
| H8B | −0.1158 | 0.7734 | 0.1008 | 0.018* | |
| C9 | −0.1049 (2) | 0.74989 (18) | −0.05366 (15) | 0.0172 (4) | |
| H9A | −0.1902 | 0.8060 | −0.0704 | 0.021* | |
| C10 | −0.0251 (2) | 0.68771 (18) | −0.12991 (15) | 0.0171 (4) | |
| H10A | −0.0540 | 0.7010 | −0.2001 | 0.021* | |
| C11 | 0.1005 (2) | 0.60376 (18) | −0.10257 (15) | 0.0154 (4) | |
| C12 | 0.1883 (2) | 0.53061 (19) | −0.17468 (15) | 0.0185 (4) | |
| H12A | 0.1647 | 0.5407 | −0.2461 | 0.022* | |
| C13 | 0.3046 (2) | 0.44706 (19) | −0.14207 (16) | 0.0186 (4) | |
| H13A | 0.3606 | 0.3991 | −0.1909 | 0.022* | |
| C14 | 0.34446 (19) | 0.42989 (17) | −0.03512 (15) | 0.0150 (3) | |
| C15 | 0.4619 (2) | 0.34293 (17) | 0.00459 (16) | 0.0175 (4) | |
| H15A | 0.5207 | 0.2914 | −0.0402 | 0.021* | |
| C16 | 0.4904 (2) | 0.33338 (17) | 0.10809 (16) | 0.0168 (4) | |
| H16A | 0.5691 | 0.2750 | 0.1357 | 0.020* | |
| C17 | 0.40235 (19) | 0.41079 (17) | 0.17342 (15) | 0.0149 (3) | |
| H17A | 0.4235 | 0.4036 | 0.2450 | 0.018* | |
| C18 | 0.26186 (19) | 0.50255 (16) | 0.03579 (14) | 0.0130 (3) | |
| C19 | 0.13779 (19) | 0.58987 (16) | 0.00219 (14) | 0.0131 (3) | |
| C20 | 0.32109 (19) | 1.08231 (17) | 0.50875 (15) | 0.0138 (3) | |
| C21 | 0.3586 (2) | 1.06598 (18) | 0.61277 (16) | 0.0175 (4) | |
| H21A | 0.4139 | 1.1161 | 0.6285 | 0.021* | |
| C22 | 0.3128 (2) | 0.97428 (19) | 0.69244 (16) | 0.0189 (4) | |
| H22A | 0.3371 | 0.9596 | 0.7642 | 0.023* | |
| C23 | 0.2307 (2) | 0.90385 (18) | 0.66607 (15) | 0.0167 (4) | |
| H23A | 0.1978 | 0.8406 | 0.7194 | 0.020* | |
| C24 | 0.19803 (18) | 0.92821 (16) | 0.56006 (15) | 0.0131 (3) | |
| C25 | 0.36731 (19) | 1.17943 (17) | 0.41766 (15) | 0.0157 (4) | |
| C26 | 0.10791 (18) | 0.86000 (16) | 0.52254 (15) | 0.0133 (3) | |
| O1W | −0.02250 (14) | 0.73999 (12) | 0.28080 (11) | 0.0162 (3) | |
| H1 | −0.0342 | 0.7339 | 0.3490 | 0.024* | |
| H2 | −0.0089 | 0.8098 | 0.2446 | 0.024* | |
| O2W | 0.20162 (16) | 1.03365 (13) | 0.25314 (11) | 0.0206 (3) | |
| H3 | 0.2729 | 0.9812 | 0.2350 | 0.031* | |
| H4 | 0.1654 | 0.9911 | 0.3094 | 0.031* | |
| O3W | 0.00061 (15) | 0.96907 (14) | 0.14753 (12) | 0.0238 (3) | |
| H5 | 0.0484 | 1.0092 | 0.1701 | 0.036* | |
| H6 | 0.0279 | 0.9587 | 0.0833 | 0.036* | |
| O4W | −0.2328 (2) | 1.09864 (16) | 0.03141 (15) | 0.0428 (5) | |
| H7 | −0.2480 | 1.1528 | −0.0263 | 0.064* | |
| H8 | −0.2752 | 1.0400 | 0.0390 | 0.064* | |
| O5W | 0.5989 (2) | 0.92774 (19) | 0.06799 (16) | 0.0443 (5) | |
| H9 | 0.5842 | 0.8595 | 0.1070 | 0.066* | |
| H10 | 0.5340 | 0.9780 | 0.0964 | 0.066* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Ni1 | 0.01194 (12) | 0.01138 (12) | 0.00901 (11) | −0.00305 (8) | −0.00187 (8) | −0.00123 (8) |
| O1 | 0.0164 (6) | 0.0140 (6) | 0.0136 (6) | −0.0047 (5) | −0.0022 (5) | −0.0008 (5) |
| O2 | 0.0198 (7) | 0.0206 (7) | 0.0217 (7) | −0.0116 (6) | −0.0009 (5) | −0.0020 (6) |
| O3 | 0.0145 (6) | 0.0154 (6) | 0.0113 (6) | −0.0053 (5) | −0.0023 (5) | −0.0013 (5) |
| O4 | 0.0178 (6) | 0.0146 (6) | 0.0139 (6) | −0.0068 (5) | −0.0018 (5) | 0.0004 (5) |
| O5 | 0.0295 (8) | 0.0183 (7) | 0.0165 (7) | −0.0131 (6) | −0.0065 (6) | 0.0006 (5) |
| O6 | 0.0236 (7) | 0.0193 (7) | 0.0218 (7) | −0.0110 (6) | −0.0049 (6) | −0.0026 (6) |
| O7 | 0.0174 (6) | 0.0177 (6) | 0.0147 (6) | −0.0067 (5) | −0.0028 (5) | −0.0015 (5) |
| O8 | 0.0207 (7) | 0.0167 (6) | 0.0161 (6) | −0.0099 (5) | −0.0029 (5) | −0.0009 (5) |
| N1 | 0.0111 (7) | 0.0117 (7) | 0.0119 (7) | −0.0023 (5) | −0.0011 (5) | −0.0028 (5) |
| N2 | 0.0151 (7) | 0.0126 (7) | 0.0115 (7) | −0.0050 (6) | −0.0021 (6) | −0.0009 (5) |
| N3 | 0.0148 (7) | 0.0121 (7) | 0.0121 (7) | −0.0057 (6) | −0.0012 (6) | −0.0013 (5) |
| N4 | 0.0136 (7) | 0.0131 (7) | 0.0138 (7) | −0.0034 (6) | −0.0020 (6) | −0.0023 (6) |
| C1 | 0.0102 (8) | 0.0115 (8) | 0.0144 (8) | −0.0015 (6) | −0.0009 (6) | −0.0034 (6) |
| C2 | 0.0121 (8) | 0.0163 (8) | 0.0171 (9) | −0.0038 (7) | −0.0020 (7) | −0.0056 (7) |
| C3 | 0.0137 (8) | 0.0196 (9) | 0.0139 (8) | −0.0016 (7) | −0.0043 (6) | −0.0048 (7) |
| C4 | 0.0133 (8) | 0.0153 (8) | 0.0119 (8) | −0.0018 (7) | −0.0024 (6) | −0.0009 (6) |
| C5 | 0.0109 (8) | 0.0113 (8) | 0.0123 (8) | −0.0012 (6) | −0.0015 (6) | −0.0027 (6) |
| C6 | 0.0134 (8) | 0.0123 (8) | 0.0146 (8) | −0.0016 (6) | 0.0001 (6) | −0.0032 (6) |
| C7 | 0.0117 (8) | 0.0119 (8) | 0.0121 (8) | −0.0026 (6) | 0.0009 (6) | −0.0038 (6) |
| C8 | 0.0165 (9) | 0.0143 (8) | 0.0145 (9) | −0.0040 (7) | −0.0027 (7) | −0.0007 (7) |
| C9 | 0.0171 (9) | 0.0178 (9) | 0.0159 (9) | −0.0050 (7) | −0.0053 (7) | 0.0017 (7) |
| C10 | 0.0194 (9) | 0.0207 (9) | 0.0122 (8) | −0.0081 (7) | −0.0046 (7) | 0.0010 (7) |
| C11 | 0.0167 (9) | 0.0184 (9) | 0.0126 (8) | −0.0079 (7) | −0.0010 (7) | −0.0021 (7) |
| C12 | 0.0218 (9) | 0.0244 (10) | 0.0123 (8) | −0.0098 (8) | −0.0003 (7) | −0.0055 (7) |
| C13 | 0.0194 (9) | 0.0244 (10) | 0.0148 (9) | −0.0098 (8) | 0.0033 (7) | −0.0077 (7) |
| C14 | 0.0159 (8) | 0.0161 (8) | 0.0145 (8) | −0.0075 (7) | 0.0014 (7) | −0.0035 (7) |
| C15 | 0.0166 (9) | 0.0158 (9) | 0.0205 (9) | −0.0058 (7) | 0.0044 (7) | −0.0060 (7) |
| C16 | 0.0140 (8) | 0.0146 (8) | 0.0202 (9) | −0.0029 (7) | −0.0001 (7) | −0.0016 (7) |
| C17 | 0.0157 (8) | 0.0141 (8) | 0.0148 (8) | −0.0051 (7) | −0.0007 (7) | −0.0012 (7) |
| C18 | 0.0149 (8) | 0.0134 (8) | 0.0117 (8) | −0.0072 (7) | −0.0002 (6) | −0.0009 (6) |
| C19 | 0.0149 (8) | 0.0136 (8) | 0.0116 (8) | −0.0065 (7) | −0.0007 (6) | −0.0012 (6) |
| C20 | 0.0125 (8) | 0.0136 (8) | 0.0153 (8) | −0.0024 (6) | −0.0021 (6) | −0.0028 (7) |
| C21 | 0.0177 (9) | 0.0189 (9) | 0.0190 (9) | −0.0062 (7) | −0.0039 (7) | −0.0060 (7) |
| C22 | 0.0218 (9) | 0.0226 (9) | 0.0135 (9) | −0.0056 (8) | −0.0044 (7) | −0.0038 (7) |
| C23 | 0.0188 (9) | 0.0167 (9) | 0.0146 (9) | −0.0053 (7) | −0.0021 (7) | −0.0012 (7) |
| C24 | 0.0119 (8) | 0.0120 (8) | 0.0151 (8) | −0.0021 (6) | −0.0011 (6) | −0.0030 (6) |
| C25 | 0.0157 (8) | 0.0144 (8) | 0.0172 (9) | −0.0033 (7) | −0.0026 (7) | −0.0028 (7) |
| C26 | 0.0121 (8) | 0.0113 (8) | 0.0163 (8) | −0.0019 (6) | −0.0009 (6) | −0.0031 (6) |
| O1W | 0.0178 (6) | 0.0170 (6) | 0.0126 (6) | −0.0011 (5) | −0.0008 (5) | −0.0037 (5) |
| O2W | 0.0291 (8) | 0.0170 (7) | 0.0158 (7) | −0.0069 (6) | −0.0043 (6) | −0.0001 (5) |
| O3W | 0.0238 (7) | 0.0283 (8) | 0.0233 (8) | −0.0102 (6) | −0.0030 (6) | −0.0081 (6) |
| O4W | 0.0644 (13) | 0.0272 (9) | 0.0417 (11) | −0.0193 (9) | −0.0339 (10) | 0.0116 (8) |
| O5W | 0.0342 (10) | 0.0487 (11) | 0.0398 (11) | −0.0134 (9) | 0.0049 (8) | 0.0100 (9) |
| Ni1—N1 | 1.9790 (15) | C9—H9A | 0.9500 |
| Ni1—N2 | 2.0462 (15) | C10—C11 | 1.414 (3) |
| Ni1—N3 | 2.0754 (16) | C10—H10A | 0.9500 |
| Ni1—O1W | 2.1023 (13) | C11—C19 | 1.406 (3) |
| Ni1—O1 | 2.1325 (13) | C11—C12 | 1.436 (3) |
| Ni1—O3 | 2.1325 (13) | C12—C13 | 1.360 (3) |
| O1—C6 | 1.272 (2) | C12—H12A | 0.9500 |
| O2—C6 | 1.246 (2) | C13—C14 | 1.436 (3) |
| O3—C7 | 1.257 (2) | C13—H13A | 0.9500 |
| O4—C7 | 1.260 (2) | C14—C18 | 1.404 (3) |
| O5—C25 | 1.326 (2) | C14—C15 | 1.411 (3) |
| O5—H5A | 0.8400 | C15—C16 | 1.368 (3) |
| O6—C25 | 1.212 (2) | C15—H15A | 0.9500 |
| O7—C26 | 1.217 (2) | C16—C17 | 1.409 (3) |
| O8—C26 | 1.312 (2) | C16—H16A | 0.9500 |
| O8—H8A | 0.8400 | C17—H17A | 0.9500 |
| N1—C5 | 1.331 (2) | C18—C19 | 1.437 (3) |
| N1—C1 | 1.335 (2) | C20—C21 | 1.393 (3) |
| N2—C8 | 1.332 (2) | C20—C25 | 1.504 (3) |
| N2—C19 | 1.362 (2) | C21—C22 | 1.385 (3) |
| N3—C17 | 1.324 (2) | C21—H21A | 0.9500 |
| N3—C18 | 1.364 (2) | C22—C23 | 1.394 (3) |
| N4—C20 | 1.331 (2) | C22—H22A | 0.9500 |
| N4—C24 | 1.339 (2) | C23—C24 | 1.389 (3) |
| C1—C2 | 1.382 (3) | C23—H23A | 0.9500 |
| C1—C6 | 1.522 (2) | C24—C26 | 1.506 (3) |
| C2—C3 | 1.399 (3) | O1W—H1 | 0.8500 |
| C2—H2A | 0.9500 | O1W—H2 | 0.8501 |
| C3—C4 | 1.390 (3) | O2W—H3 | 0.8500 |
| C3—H3A | 0.9500 | O2W—H4 | 0.8500 |
| C4—C5 | 1.390 (2) | O3W—H5 | 0.8501 |
| C4—H4B | 0.9500 | O3W—H6 | 0.8501 |
| C5—C7 | 1.519 (2) | O4W—H7 | 0.8499 |
| C8—C9 | 1.402 (3) | O4W—H8 | 0.8500 |
| C8—H8B | 0.9500 | O5W—H9 | 0.8500 |
| C9—C10 | 1.376 (3) | O5W—H10 | 0.8500 |
| N1—Ni1—N2 | 176.22 (6) | C9—C10—H10A | 120.4 |
| N1—Ni1—N3 | 98.32 (6) | C11—C10—H10A | 120.4 |
| N2—Ni1—N3 | 80.66 (6) | C19—C11—C10 | 117.33 (17) |
| N1—Ni1—O1W | 91.23 (6) | C19—C11—C12 | 119.15 (17) |
| N2—Ni1—O1W | 89.89 (6) | C10—C11—C12 | 123.49 (17) |
| N3—Ni1—O1W | 170.36 (6) | C13—C12—C11 | 120.85 (18) |
| N1—Ni1—O1 | 78.03 (6) | C13—C12—H12A | 119.6 |
| N2—Ni1—O1 | 98.33 (6) | C11—C12—H12A | 119.6 |
| N3—Ni1—O1 | 91.53 (5) | C12—C13—C14 | 121.23 (18) |
| O1W—Ni1—O1 | 91.76 (5) | C12—C13—H13A | 119.4 |
| N1—Ni1—O3 | 77.62 (6) | C14—C13—H13A | 119.4 |
| N2—Ni1—O3 | 106.01 (5) | C18—C14—C15 | 117.11 (17) |
| N3—Ni1—O3 | 91.48 (5) | C18—C14—C13 | 118.81 (17) |
| O1W—Ni1—O3 | 89.24 (5) | C15—C14—C13 | 124.07 (18) |
| O1—Ni1—O3 | 155.65 (5) | C16—C15—C14 | 119.53 (17) |
| C6—O1—Ni1 | 114.67 (11) | C16—C15—H15A | 120.2 |
| C7—O3—Ni1 | 114.38 (11) | C14—C15—H15A | 120.2 |
| C25—O5—H5A | 109.5 | C15—C16—C17 | 119.54 (18) |
| C26—O8—H8A | 109.5 | C15—C16—H16A | 120.2 |
| C5—N1—C1 | 121.56 (16) | C17—C16—H16A | 120.2 |
| C5—N1—Ni1 | 119.38 (12) | N3—C17—C16 | 122.47 (17) |
| C1—N1—Ni1 | 118.66 (12) | N3—C17—H17A | 118.8 |
| C8—N2—C19 | 117.89 (16) | C16—C17—H17A | 118.8 |
| C8—N2—Ni1 | 128.89 (13) | N3—C18—C14 | 123.15 (17) |
| C19—N2—Ni1 | 113.21 (12) | N3—C18—C19 | 116.67 (16) |
| C17—N3—C18 | 118.21 (16) | C14—C18—C19 | 120.16 (17) |
| C17—N3—Ni1 | 129.43 (13) | N2—C19—C11 | 123.22 (17) |
| C18—N3—Ni1 | 112.35 (12) | N2—C19—C18 | 116.97 (16) |
| C20—N4—C24 | 117.95 (16) | C11—C19—C18 | 119.77 (17) |
| N1—C1—C2 | 121.05 (16) | N4—C20—C21 | 123.74 (17) |
| N1—C1—C6 | 113.02 (15) | N4—C20—C25 | 115.21 (16) |
| C2—C1—C6 | 125.88 (16) | C21—C20—C25 | 121.05 (17) |
| C1—C2—C3 | 117.96 (17) | C22—C21—C20 | 117.81 (17) |
| C1—C2—H2A | 121.0 | C22—C21—H21A | 121.1 |
| C3—C2—H2A | 121.0 | C20—C21—H21A | 121.1 |
| C4—C3—C2 | 120.48 (17) | C21—C22—C23 | 119.22 (18) |
| C4—C3—H3A | 119.8 | C21—C22—H22A | 120.4 |
| C2—C3—H3A | 119.8 | C23—C22—H22A | 120.4 |
| C5—C4—C3 | 117.65 (17) | C24—C23—C22 | 118.47 (17) |
| C5—C4—H4B | 121.2 | C24—C23—H23A | 120.8 |
| C3—C4—H4B | 121.2 | C22—C23—H23A | 120.8 |
| N1—C5—C4 | 121.29 (16) | N4—C24—C23 | 122.80 (17) |
| N1—C5—C7 | 111.82 (15) | N4—C24—C26 | 113.94 (16) |
| C4—C5—C7 | 126.87 (16) | C23—C24—C26 | 123.26 (16) |
| O2—C6—O1 | 126.39 (17) | O6—C25—O5 | 120.81 (17) |
| O2—C6—C1 | 118.29 (16) | O6—C25—C20 | 122.40 (17) |
| O1—C6—C1 | 115.32 (16) | O5—C25—C20 | 116.79 (16) |
| O3—C7—O4 | 125.29 (17) | O7—C26—O8 | 124.45 (17) |
| O3—C7—C5 | 116.47 (15) | O7—C26—C24 | 121.99 (16) |
| O4—C7—C5 | 118.24 (16) | O8—C26—C24 | 113.56 (16) |
| N2—C8—C9 | 122.90 (18) | Ni1—O1W—H1 | 116.7 |
| N2—C8—H8B | 118.6 | Ni1—O1W—H2 | 102.9 |
| C9—C8—H8B | 118.6 | H1—O1W—H2 | 114.9 |
| C10—C9—C8 | 119.48 (18) | H3—O2W—H4 | 101.8 |
| C10—C9—H9A | 120.3 | H5—O3W—H6 | 113.4 |
| C8—C9—H9A | 120.3 | H7—O4W—H8 | 113.0 |
| C9—C10—C11 | 119.17 (17) | H9—O5W—H10 | 99.9 |
| N1—Ni1—O1—C6 | −1.09 (12) | N1—C5—C7—O4 | 173.91 (15) |
| N2—Ni1—O1—C6 | 179.94 (12) | C4—C5—C7—O4 | −7.9 (3) |
| N3—Ni1—O1—C6 | −99.28 (13) | C19—N2—C8—C9 | −0.7 (3) |
| O1W—Ni1—O1—C6 | 89.79 (13) | Ni1—N2—C8—C9 | 178.26 (13) |
| O3—Ni1—O1—C6 | −2.3 (2) | N2—C8—C9—C10 | 0.1 (3) |
| N1—Ni1—O3—C7 | −0.40 (12) | C8—C9—C10—C11 | 0.7 (3) |
| N2—Ni1—O3—C7 | 178.50 (12) | C9—C10—C11—C19 | −0.8 (3) |
| N3—Ni1—O3—C7 | 97.79 (13) | C9—C10—C11—C12 | 177.34 (18) |
| O1W—Ni1—O3—C7 | −91.82 (12) | C19—C11—C12—C13 | 1.2 (3) |
| O1—Ni1—O3—C7 | 0.8 (2) | C10—C11—C12—C13 | −176.87 (18) |
| N3—Ni1—N1—C5 | −93.15 (14) | C11—C12—C13—C14 | −0.6 (3) |
| O1W—Ni1—N1—C5 | 85.50 (13) | C12—C13—C14—C18 | −0.9 (3) |
| O1—Ni1—N1—C5 | 177.05 (14) | C12—C13—C14—C15 | 178.47 (18) |
| O3—Ni1—N1—C5 | −3.45 (13) | C18—C14—C15—C16 | −0.3 (3) |
| N3—Ni1—N1—C1 | 94.01 (13) | C13—C14—C15—C16 | −179.67 (18) |
| O1W—Ni1—N1—C1 | −87.35 (13) | C14—C15—C16—C17 | −0.2 (3) |
| O1—Ni1—N1—C1 | 4.20 (13) | C18—N3—C17—C16 | 0.0 (3) |
| O3—Ni1—N1—C1 | −176.30 (14) | Ni1—N3—C17—C16 | 178.89 (13) |
| N3—Ni1—N2—C8 | 177.64 (16) | C15—C16—C17—N3 | 0.3 (3) |
| O1W—Ni1—N2—C8 | −0.40 (16) | C17—N3—C18—C14 | −0.5 (3) |
| O1—Ni1—N2—C8 | −92.17 (16) | Ni1—N3—C18—C14 | −179.59 (14) |
| O3—Ni1—N2—C8 | 88.78 (16) | C17—N3—C18—C19 | 177.93 (16) |
| N3—Ni1—N2—C19 | −3.34 (12) | Ni1—N3—C18—C19 | −1.15 (19) |
| O1W—Ni1—N2—C19 | 178.62 (12) | C15—C14—C18—N3 | 0.7 (3) |
| O1—Ni1—N2—C19 | 86.85 (12) | C13—C14—C18—N3 | −179.93 (16) |
| O3—Ni1—N2—C19 | −92.20 (12) | C15—C14—C18—C19 | −177.73 (16) |
| N1—Ni1—N3—C17 | 7.14 (16) | C13—C14—C18—C19 | 1.7 (3) |
| N2—Ni1—N3—C17 | −176.54 (16) | C8—N2—C19—C11 | 0.6 (3) |
| O1—Ni1—N3—C17 | 85.27 (16) | Ni1—N2—C19—C11 | −178.56 (14) |
| O3—Ni1—N3—C17 | −70.56 (16) | C8—N2—C19—C18 | −177.09 (16) |
| N1—Ni1—N3—C18 | −173.91 (12) | Ni1—N2—C19—C18 | 3.77 (19) |
| N2—Ni1—N3—C18 | 2.41 (12) | C10—C11—C19—N2 | 0.2 (3) |
| O1—Ni1—N3—C18 | −95.78 (12) | C12—C11—C19—N2 | −178.06 (17) |
| O3—Ni1—N3—C18 | 108.39 (12) | C10—C11—C19—C18 | 177.79 (16) |
| C5—N1—C1—C2 | −1.3 (3) | C12—C11—C19—C18 | −0.4 (3) |
| Ni1—N1—C1—C2 | 171.37 (13) | N3—C18—C19—N2 | −1.7 (2) |
| C5—N1—C1—C6 | −178.88 (15) | C14—C18—C19—N2 | 176.74 (16) |
| Ni1—N1—C1—C6 | −6.2 (2) | N3—C18—C19—C11 | −179.51 (16) |
| N1—C1—C2—C3 | 0.8 (3) | C14—C18—C19—C11 | −1.0 (3) |
| C6—C1—C2—C3 | 178.04 (17) | C24—N4—C20—C21 | 0.2 (3) |
| C1—C2—C3—C4 | 0.6 (3) | C24—N4—C20—C25 | −179.58 (16) |
| C2—C3—C4—C5 | −1.4 (3) | N4—C20—C21—C22 | 0.6 (3) |
| C1—N1—C5—C4 | 0.4 (3) | C25—C20—C21—C22 | −179.68 (17) |
| Ni1—N1—C5—C4 | −172.21 (13) | C20—C21—C22—C23 | −0.7 (3) |
| C1—N1—C5—C7 | 178.71 (15) | C21—C22—C23—C24 | 0.2 (3) |
| Ni1—N1—C5—C7 | 6.08 (19) | C20—N4—C24—C23 | −0.8 (3) |
| C3—C4—C5—N1 | 0.9 (3) | C20—N4—C24—C26 | 178.62 (16) |
| C3—C4—C5—C7 | −177.09 (17) | C22—C23—C24—N4 | 0.6 (3) |
| Ni1—O1—C6—O2 | 179.10 (15) | C22—C23—C24—C26 | −178.76 (17) |
| Ni1—O1—C6—C1 | −1.73 (19) | N4—C20—C25—O6 | 178.52 (18) |
| N1—C1—C6—O2 | −175.69 (16) | C21—C20—C25—O6 | −1.3 (3) |
| C2—C1—C6—O2 | 6.9 (3) | N4—C20—C25—O5 | −1.7 (2) |
| N1—C1—C6—O1 | 5.1 (2) | C21—C20—C25—O5 | 178.54 (17) |
| C2—C1—C6—O1 | −172.37 (17) | N4—C24—C26—O7 | 1.8 (3) |
| Ni1—O3—C7—O4 | −176.60 (14) | C23—C24—C26—O7 | −178.84 (18) |
| Ni1—O3—C7—C5 | 3.63 (19) | N4—C24—C26—O8 | −178.54 (15) |
| N1—C5—C7—O3 | −6.3 (2) | C23—C24—C26—O8 | 0.9 (3) |
| C4—C5—C7—O3 | 171.87 (17) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| O5—H5A···O2W | 0.84 | 1.96 | 2.730 (2) | 151 |
| O8—H8A···O4i | 0.84 | 1.73 | 2.573 (2) | 177 |
| O1W—H1···O4i | 0.85 | 2.13 | 2.946 (2) | 161 |
| O1W—H2···O3W | 0.85 | 1.95 | 2.796 (2) | 171 |
| O2W—H3···O2 | 0.85 | 2.09 | 2.900 (2) | 159 |
| O2W—H4···O7 | 0.85 | 1.94 | 2.788 (2) | 174 |
| O3W—H5···O2W | 0.85 | 2.09 | 2.887 (2) | 157 |
| O3W—H6···O4Wii | 0.85 | 2.37 | 3.083 (3) | 142 |
| O4W—H7···O1ii | 0.85 | 2.03 | 2.864 (3) | 168 |
| O4W—H8···O5Wiii | 0.85 | 1.93 | 2.772 (3) | 169 |
| O5W—H9···O2 | 0.85 | 2.24 | 2.878 (3) | 131 |
| O2W—H4···N4 | 0.85 | 2.54 | 2.968 (2) | 112 |
| O5—H5A···N4 | 0.84 | 2.18 | 2.669 (2) | 117 |
| C2—H2A···O6iv | 0.95 | 2.28 | 3.105 (2) | 144 |
| C8—H8B···O1W | 0.95 | 2.52 | 3.070 (2) | 117 |
| C12—H12A···O3v | 0.95 | 2.60 | 3.317 (2) | 132 |
| C15—H15A···O1vi | 0.95 | 2.52 | 3.385 (2) | 151 |
| Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x, −y+2, −z; (iii) x−1, y, z; (iv) −x+1, −y+2, −z+1; (v) −x, −y+1, −z; (vi) −x+1, −y+1, −z. |
| Ni1—N1 | 1.9790 (15) | Ni1—O1W | 2.1023 (13) |
| Ni1—N2 | 2.0462 (15) | Ni1—O1 | 2.1325 (13) |
| Ni1—N3 | 2.0754 (16) | Ni1—O3 | 2.1325 (13) |
| N1—Ni1—N2 | 176.22 (6) | N1—Ni1—O1W | 91.23 (6) |
| N1—Ni1—N3 | 98.32 (6) | N2—Ni1—O1W | 89.89 (6) |
| N2—Ni1—N3 | 80.66 (6) | O1—Ni1—O3 | 155.65 (5) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| O5—H5A···O2W | 0.84 | 1.96 | 2.730 (2) | 151 |
| O8—H8A···O4i | 0.84 | 1.73 | 2.573 (2) | 177 |
| O1W—H1···O4i | 0.85 | 2.13 | 2.946 (2) | 161 |
| O1W—H2···O3W | 0.85 | 1.95 | 2.796 (2) | 171 |
| O2W—H3···O2 | 0.85 | 2.09 | 2.900 (2) | 159 |
| O2W—H4···O7 | 0.85 | 1.94 | 2.788 (2) | 174 |
| O3W—H5···O2W | 0.85 | 2.09 | 2.887 (2) | 157 |
| O3W—H6···O4Wii | 0.85 | 2.37 | 3.083 (3) | 142 |
| O4W—H7···O1ii | 0.85 | 2.03 | 2.864 (3) | 168 |
| O4W—H8···O5Wiii | 0.85 | 1.93 | 2.772 (3) | 169 |
| O5W—H9···O2 | 0.85 | 2.24 | 2.878 (3) | 131 |
| O2W—H4···N4 | 0.85 | 2.54 | 2.968 (2) | 112 |
| O5—H5A···N4 | 0.84 | 2.18 | 2.669 (2) | 117 |
| C2—H2A···O6iv | 0.95 | 2.28 | 3.105 (2) | 144 |
| C8—H8B···O1W | 0.95 | 2.52 | 3.070 (2) | 117 |
| C12—H12A···O3v | 0.95 | 2.60 | 3.317 (2) | 132 |
| C15—H15A···O1vi | 0.95 | 2.52 | 3.385 (2) | 151 |
| Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x, −y+2, −z; (iii) x−1, y, z; (iv) −x+1, −y+2, −z+1; (v) −x, −y+1, −z; (vi) −x+1, −y+1, −z. |
Financial support by Payame Noor University, Qom Center, and Kashan University is gratefully acknowledged. We thank the X-ray Structural Center (Moscow, Russia) for the data collection.
Aghabozorg, H., Daneshvar, S., Motyeian, E., Ghadermazi, M. & Attar Gharamaleki, J. (2007). Acta Cryst. E63, m2468–m2469.
Aghabozorg, H., Manteghi, F. & Sheshmani, S. (2008). J. Iran. Chem. Soc., 5, 184–227.
Aghabozorg, H., Motyeian, E., Khadivi, R., Ghadermazi, M. & Manteghi, F. (2008). Acta Cryst. E64, m320–m321.
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Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457.
Sharif, M. A., Aghabozorg, H., Motyeian, E., Ghadermazi, M. & Attar Gharamaleki, J. (2007). Acta Cryst. E63, m2235–m2236.
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Su, H., Wan, Y.-H. & Feng, Y.-L. (2005). Z. Kristallogr. New Cryst. Struct. 220, 560–562.
Non-covalent interactions including hydrogen bonds are of great importance in stabilizing the structures of different compounds in solid state. The importance of weak hydrogen bonds in the context of crystal engineering, molecular recognition and supramolecular chemistry has been well recognized in recent years. Recently, we have defined a plan to prepare water soluble proton transfer compounds as novel self assembled systems that can function as suitable ligands in the synthesis of metal complexes. In this regard, we have reported cases in which proton transfer from pyridine-2,3-dicarboxylic acid and pyridine-2,6-dicarboxylic acid (pydcH2), to piperazine (pipz), 1,10-phenanthroline, (phen) and propane-1,3-diamine (pn), resulted in the formation of self assembled systems. The resulting compounds, with some remaining sites as electron donors, can coordinate to metal ions (Aghabozorg, Daneshvar, et al., 2007; Sharif et al., 2007; Aghabozorg, Motyeian et al., 2008). For more details and related literature see our recent review article (Aghabozorg, Manteghi & Sheshmani (2008). The title compound is isostructural with a Co complex previously reported (Su et al., 2005).
The molecular structure of the title compound is presented in Fig. 1. In the [Ni(pydc)(phen)(H2O)].(pydcH2).4H2O compound, both cationic and anionic components of the starting proton transfer compound have been involved in the complexation. The NiII atom is coordinated by one 1,10-phenanthroline ligand, (phen as bidentate ligand), one pyridine-2,6-dicarboxylate group, ((pydc)2- as tridentate ligand) and one water molecule. The geometry of the resulting NiN3O3 coordination can be described as distorted octahedral. The angle between the two planes of the (pydc)2– and (phen) ligands is 89.49 (2)°, indicating that these two groups are almost perpendicular to each other.
There are notable π-π interactions between aromatic rings of coordinated (phen) fragments with distances of 3.4781 (11)Å [1 - x, 1 - y, -z], 3.4694 (12)Å [-x, 1 - y, -z] and 3.8310 (11)Å [-x, 1 - y, -z] (Fig. 2). There are also C–O···π intermolecular interactions between CO groups of carboxylate fragments with aromatic rings of pyridine-2,6-dicarboxylate with distances of 3.4812 (17) Å for C25—O6···Cg11 (1 - x, 2 - y, 1 - z), 3.5784 (16) Å for C7—O4···Cg4 (-x, 1 - y, 1 - z) and 3.5926 (16) Å for C26—O7···Cg4 (x, y, z) (Fig. 3). In addition to these interactions there is a wide range of hydrogen bonding of the type O—H···O, O—H···N and C—H···O with D···A ranging from 2.573 (2) to 3.385 (2) Å, (Table 2 and Fig. 4).