supplementary materials


Acta Cryst. (2009). E65, o569    [ doi:10.1107/S1600536809005662 ]

3,3'-Dibenzoyl-1,1'-(3,6-dioxaoctane-1,8-diyl)dithiourea

M. M. Sow, O. Diouf, A. H. Barry, M. Gaye and A. S. Sall

Abstract top

In the molecule of the title compound, C22H26N4O4S2, the central O-CH2-CH2-O chain adopts a synclinal conformation [torsion angle = 65.0 (2)°]. The crystal structure is stabilized by intramolecular N-H...O=C and intermolecular N-H...O-C hydrogen bonds.

Comment top

The title compound, C22H26N4O4S2, was characterized by 1H and 13C NMR, solid-state IR and X-ray crystallographic techniques. The X-ray structure determination reveals that the compound crystallizes in the triclinic space group P1 with one molecule in the asymmetric unit. The molecular geometry is illustrated in Fig. 1. The C—S bond lengths of 1.665 (3) Å and 1.659 (2) Å and the C—O bond lengths of 1.220 (3) Å and 1.222 (3) Å are double bonds character and are comparable to those observed for 1-(biphenyl-4-carbonyl)-3-p-tolyl-thiourea [1.647 (3) Å for C—S, 1.217 (3) and 1.224 (3) Å for C—O respectively (Arslan et al., 2004)]. The C—N bond lengths are in the range 1.310 (3)–1.451 (3) Å, and are shorter than the normal single C—N bond length (Avşar et al., 2003). The carbonyl group forms an intramolecular hydrogen bonds with the N2—H2 and the N3—H3 groups, which forms two six-membered rings (C8/N1/C7/O1/H2/N2 and C15/N4/C16/O4/H3/N3) structure (Fig. 2); H2···O1 and the H3···O4 separations are respectively 1.99 (3) Å and 2.01 (3) Å. There is an intermolecular hydrogen bonding between N4—H4 and the O atom of the ethoxy group of a symmetry-related molecule, the H4···O2 (-x + 2, -y, -z + 1) separation being 2.48 (3) Å (Table 1). The structure of the title compound is related to other thiourea derivatives (e.g. Ding et al., 2008; Du & Du, 2008).

Related literature top

For related structures, see: Avşar et al. (2003); Arslan et al. (2004); Du & Du (2008); Ding et al. (2008).

Experimental top

Benzoyl chloride (7.10 g, 50 mmol) was reacted with potassium thiocyanate (4.86 g, 50 mmol) in CH3OCH3 (50 ml) solution, to give the corresponding benzoyl isothiocyanate after one hour under refluxing. After cooling to room temperature, a solution of 2-(2-(2-aminoethoxy)ethoxy)ethanamine (3.70 g, 25 mmol) in CH3OCH3 (20 ml) was added dropwise to benzoyl isothiocyanate. After three hours under stirring, 200 ml of HCl 1 M was added. A yellow oil was isolated and treated with diethyl ether to give the title compound which is washed with diethyl ether twice. Yield: 55.9%. m.p. 415–419 K. Anal. Calc. for C22H26N4O4S2: C 55.68, H 5.52, N 11.81%. Found: C 55.70, H 5.45, N 11.65%. Selected IR data (cm-1, KBr pellet): 3424, 3218 (ν NH), 1667 (ν C?O), 1160 (ν C?S). 1H-NMR (200 MHz, DMSO-d6, δ, p.p.m.): 3.45 (t, 4H, N—CH2); 3.63 (s, 4H, O—CH2); 3.70 (t, 4H, O—CH2); 7.21–7.92 (m, 10H, C6H5); 11.01 (s, 2H, NH); 11.41 (s, 2H, NH). 13C-NMR (50 MHz, DMSO-d6, δ, p.p.m.): 45.21 (N—CH2); 68.09 (O—CH2); 70.12 (O—CH2); 133.31–127.62 (C6H5); 1168.60 (C?O); 180.81 (C?S). A CH3Cl solution of the title compound was mixed with ethanol (1/1). After several days, colorless block-shaped single crystals suitable for X-ray crystallographic analysis were obtained.

Refinement top

H atoms of NH groups were located in a difference map and refined freely. Others H atoms were placed geometrically and refined with a riding model. Uiso(H) for H was calculated as 1.2 Ueq of the carrier atom.

Computing details top

Data collection: COLLECT (Nonius, 1998); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. An ORTEP view of the asymmetric unit of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are plotted at the 50% probability level.
[Figure 2] Fig. 2. Molecular representation of the compound showing hydrogen bonds (dashed lines).
3,3'-Dibenzoyl-1,1'-(3,6-dioxaoctane-1,8-diyl)dithiourea top
Crystal data top
C22H26N4O4S2Z = 2
Mr = 474.59F(000) = 500
Triclinic, P1Dx = 1.347 Mg m3
Hall symbol: -P 1Melting point: 415 K
a = 7.9718 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.2177 (3) ÅCell parameters from 4206 reflections
c = 16.4106 (5) Åθ = 1.0–25.4°
α = 81.018 (2)°µ = 0.26 mm1
β = 83.364 (2)°T = 293 K
γ = 80.450 (2)°Prism, yellow
V = 1169.60 (6) Å30.10 × 0.10 × 0.10 mm
Data collection top
Nonius KappaCCD
diffractometer
2737 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.030
graphiteθmax = 25.2°, θmin = 2.3°
ω scansh = 99
7989 measured reflectionsk = 1111
4211 independent reflectionsl = 1919
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.0614P)2 + 0.2609P]
where P = (Fo2 + 2Fc2)/3
4211 reflections(Δ/σ)max = 0.008
305 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = 0.50 e Å3
0 constraints
Crystal data top
C22H26N4O4S2γ = 80.450 (2)°
Mr = 474.59V = 1169.60 (6) Å3
Triclinic, P1Z = 2
a = 7.9718 (2) ÅMo Kα radiation
b = 9.2177 (3) ŵ = 0.26 mm1
c = 16.4106 (5) ÅT = 293 K
α = 81.018 (2)°0.10 × 0.10 × 0.10 mm
β = 83.364 (2)°
Data collection top
Nonius KappaCCD
diffractometer
2737 reflections with I > 2σ(I)
7989 measured reflectionsRint = 0.030
4211 independent reflectionsθmax = 25.2°
Refinement top
R[F2 > 2σ(F2)] = 0.045H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.128Δρmax = 0.41 e Å3
S = 1.02Δρmin = 0.50 e Å3
4211 reflectionsAbsolute structure: ?
305 parametersFlack parameter: ?
0 restraintsRogers parameter: ?
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S10.37094 (10)0.16706 (9)0.86251 (5)0.0713 (3)
S21.26452 (13)0.27342 (8)0.52516 (4)0.0790 (3)
O10.7377 (3)0.4586 (2)0.91685 (11)0.0711 (6)
O20.81088 (19)0.39803 (17)0.67050 (9)0.0482 (4)
O31.12041 (19)0.24744 (17)0.60508 (10)0.0472 (4)
O41.2463 (3)0.1608 (2)0.35665 (11)0.0740 (6)
N10.5641 (3)0.2839 (3)0.94678 (14)0.0527 (6)
H10.530 (3)0.224 (3)0.9815 (16)0.049 (8)*
N20.5680 (3)0.3729 (2)0.80784 (13)0.0492 (5)
H20.639 (3)0.422 (3)0.8172 (16)0.056 (8)*
N31.2498 (3)0.0165 (3)0.50822 (13)0.0506 (5)
H31.236 (3)0.099 (3)0.4798 (17)0.063 (9)*
N41.2073 (3)0.0786 (2)0.39123 (12)0.0465 (5)
H41.190 (3)0.154 (3)0.3741 (15)0.052 (8)*
C10.7116 (3)0.3433 (3)1.05616 (14)0.0456 (6)
C20.8101 (3)0.4370 (3)1.08034 (16)0.0539 (6)
H2A0.84970.51151.04160.065*
C30.8498 (4)0.4211 (3)1.16088 (18)0.0639 (7)
H3A0.91690.48401.17630.077*
C40.7902 (4)0.3120 (3)1.21864 (18)0.0692 (8)
H4A0.81650.30121.27320.083*
C50.6923 (4)0.2194 (4)1.19573 (19)0.0771 (9)
H50.65130.14641.23500.093*
C60.6537 (4)0.2335 (3)1.11472 (17)0.0649 (8)
H60.58850.16901.09950.078*
C70.6744 (3)0.3674 (3)0.96796 (15)0.0488 (6)
C80.5078 (3)0.2817 (3)0.86956 (15)0.0477 (6)
C90.5275 (3)0.3838 (3)0.72324 (15)0.0537 (6)
H9A0.40950.42930.71890.064*
H9B0.54060.28510.70750.064*
C100.6419 (3)0.4745 (3)0.66582 (15)0.0516 (6)
H10A0.61010.48590.60960.062*
H10B0.63310.57230.68220.062*
C110.9346 (3)0.4733 (3)0.61860 (16)0.0522 (6)
H11A0.92780.57300.63200.063*
H11B0.91330.48040.56100.063*
C121.1067 (3)0.3882 (3)0.63208 (16)0.0506 (6)
H12A1.19360.44260.60140.061*
H12B1.12430.37510.69040.061*
C131.2832 (3)0.1611 (3)0.61572 (16)0.0529 (6)
H13A1.30920.15380.67270.063*
H13B1.37050.20770.57990.063*
C141.2803 (3)0.0091 (3)0.59436 (14)0.0504 (6)
H14A1.38870.05290.60450.061*
H14B1.19120.03590.62970.061*
C151.2389 (3)0.1016 (3)0.47501 (14)0.0447 (6)
C161.2118 (3)0.0483 (3)0.33592 (14)0.0454 (6)
C171.1796 (3)0.0433 (2)0.24907 (14)0.0419 (5)
C181.2227 (3)0.1595 (3)0.19018 (15)0.0527 (6)
H181.26840.23610.20620.063*
C191.1984 (3)0.1624 (3)0.10851 (16)0.0610 (7)
H191.22990.23980.06930.073*
C201.1281 (3)0.0520 (3)0.08436 (16)0.0618 (7)
H201.11200.05460.02890.074*
C211.0811 (3)0.0632 (3)0.14224 (16)0.0605 (7)
H211.03240.13780.12600.073*
C221.1069 (3)0.0672 (3)0.22467 (15)0.0507 (6)
H221.07510.14460.26380.061*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S10.0807 (5)0.0781 (5)0.0659 (5)0.0445 (4)0.0032 (4)0.0115 (4)
S20.1467 (8)0.0464 (4)0.0494 (4)0.0296 (5)0.0275 (5)0.0059 (3)
O10.0906 (14)0.0822 (14)0.0503 (11)0.0502 (12)0.0123 (10)0.0050 (10)
O20.0498 (10)0.0443 (9)0.0461 (9)0.0077 (8)0.0014 (8)0.0036 (7)
O30.0497 (10)0.0457 (9)0.0501 (10)0.0119 (8)0.0053 (7)0.0140 (8)
O40.1328 (18)0.0430 (11)0.0518 (11)0.0288 (11)0.0176 (11)0.0010 (9)
N10.0584 (14)0.0572 (14)0.0453 (13)0.0237 (11)0.0023 (11)0.0054 (11)
N20.0468 (12)0.0626 (14)0.0431 (12)0.0214 (11)0.0000 (10)0.0112 (10)
N30.0716 (15)0.0397 (13)0.0409 (12)0.0077 (11)0.0081 (10)0.0055 (10)
N40.0666 (14)0.0372 (12)0.0385 (11)0.0162 (10)0.0079 (9)0.0024 (9)
C10.0450 (13)0.0445 (14)0.0455 (14)0.0027 (11)0.0034 (11)0.0053 (11)
C20.0562 (15)0.0556 (16)0.0514 (15)0.0127 (13)0.0023 (12)0.0093 (12)
C30.0698 (18)0.0677 (18)0.0579 (17)0.0074 (15)0.0134 (14)0.0177 (15)
C40.076 (2)0.078 (2)0.0507 (17)0.0048 (17)0.0169 (15)0.0081 (16)
C50.087 (2)0.080 (2)0.0591 (19)0.0181 (18)0.0171 (16)0.0192 (16)
C60.0748 (19)0.0598 (17)0.0612 (18)0.0203 (15)0.0184 (15)0.0077 (14)
C70.0483 (14)0.0492 (15)0.0496 (15)0.0124 (12)0.0012 (12)0.0062 (12)
C80.0461 (13)0.0507 (15)0.0486 (15)0.0121 (11)0.0023 (11)0.0135 (12)
C90.0498 (15)0.0667 (17)0.0491 (15)0.0132 (13)0.0048 (12)0.0167 (13)
C100.0562 (15)0.0521 (15)0.0451 (14)0.0026 (12)0.0084 (12)0.0056 (12)
C110.0639 (16)0.0404 (14)0.0514 (15)0.0188 (12)0.0041 (12)0.0006 (11)
C120.0578 (15)0.0444 (14)0.0527 (15)0.0208 (12)0.0023 (12)0.0082 (12)
C130.0527 (15)0.0607 (16)0.0485 (15)0.0100 (13)0.0065 (12)0.0144 (12)
C140.0612 (16)0.0531 (15)0.0379 (13)0.0040 (12)0.0102 (11)0.0100 (11)
C150.0512 (14)0.0442 (14)0.0399 (13)0.0115 (11)0.0051 (11)0.0044 (11)
C160.0543 (14)0.0392 (14)0.0426 (13)0.0097 (11)0.0041 (11)0.0023 (11)
C170.0440 (13)0.0396 (13)0.0399 (13)0.0052 (10)0.0027 (10)0.0009 (10)
C180.0591 (16)0.0488 (15)0.0492 (15)0.0153 (12)0.0033 (12)0.0029 (12)
C190.0667 (18)0.0656 (18)0.0458 (16)0.0163 (15)0.0043 (13)0.0132 (13)
C200.0631 (17)0.080 (2)0.0399 (14)0.0112 (15)0.0098 (13)0.0033 (14)
C210.0691 (17)0.0629 (17)0.0527 (16)0.0161 (14)0.0134 (13)0.0059 (13)
C220.0572 (15)0.0500 (15)0.0434 (14)0.0135 (12)0.0065 (12)0.0052 (11)
Geometric parameters (Å, °) top
S1—C81.665 (3)C5—H50.9300
S2—C151.659 (2)C6—H60.9300
O1—C71.220 (3)C9—C101.492 (3)
O2—C101.417 (3)C9—H9A0.9700
O2—C111.424 (3)C9—H9B0.9700
O3—C121.419 (3)C10—H10A0.9700
O3—C131.419 (3)C10—H10B0.9700
O4—C161.222 (3)C11—C121.485 (3)
N1—C71.366 (3)C11—H11A0.9700
N1—C81.396 (3)C11—H11B0.9700
N1—H10.79 (3)C12—H12A0.9700
N2—C81.311 (3)C12—H12B0.9700
N2—C91.446 (3)C13—C141.501 (3)
N2—H20.82 (3)C13—H13A0.9700
N3—C151.310 (3)C13—H13B0.9700
N3—C141.451 (3)C14—H14A0.9700
N3—H30.83 (3)C14—H14B0.9700
N4—C161.367 (3)C16—C171.486 (3)
N4—C151.404 (3)C17—C221.382 (3)
N4—H40.82 (3)C17—C181.386 (3)
C1—C61.382 (3)C18—C191.372 (4)
C1—C21.387 (3)C18—H180.9300
C1—C71.486 (3)C19—C201.369 (4)
C2—C31.375 (4)C19—H190.9300
C2—H2A0.9300C20—C211.380 (4)
C3—C41.376 (4)C20—H200.9300
C3—H3A0.9300C21—C221.386 (4)
C4—C51.366 (4)C21—H210.9300
C4—H4A0.9300C22—H220.9300
C5—C61.381 (4)
C10—O2—C11113.12 (18)H10A—C10—H10B108.5
C12—O3—C13112.15 (18)O2—C11—C12108.43 (19)
C7—N1—C8129.4 (2)O2—C11—H11A110.0
C7—N1—H1117.6 (19)C12—C11—H11A110.0
C8—N1—H1112.9 (19)O2—C11—H11B110.0
C8—N2—C9124.1 (2)C12—C11—H11B110.0
C8—N2—H2117.9 (18)H11A—C11—H11B108.4
C9—N2—H2117.9 (19)O3—C12—C11109.5 (2)
C15—N3—C14122.6 (2)O3—C12—H12A109.8
C15—N3—H3119 (2)C11—C12—H12A109.8
C14—N3—H3118 (2)O3—C12—H12B109.8
C16—N4—C15127.9 (2)C11—C12—H12B109.8
C16—N4—H4118.1 (18)H12A—C12—H12B108.2
C15—N4—H4113.8 (18)O3—C13—C14108.6 (2)
C6—C1—C2118.7 (2)O3—C13—H13A110.0
C6—C1—C7123.7 (2)C14—C13—H13A110.0
C2—C1—C7117.6 (2)O3—C13—H13B110.0
C3—C2—C1120.8 (3)C14—C13—H13B110.0
C3—C2—H2A119.6H13A—C13—H13B108.4
C1—C2—H2A119.6N3—C14—C13111.0 (2)
C2—C3—C4119.8 (3)N3—C14—H14A109.4
C2—C3—H3A120.1C13—C14—H14A109.4
C4—C3—H3A120.1N3—C14—H14B109.4
C5—C4—C3119.9 (3)C13—C14—H14B109.4
C5—C4—H4A120.0H14A—C14—H14B108.0
C3—C4—H4A120.0N3—C15—N4116.7 (2)
C4—C5—C6120.5 (3)N3—C15—S2124.06 (19)
C4—C5—H5119.7N4—C15—S2119.18 (18)
C6—C5—H5119.7O4—C16—N4121.1 (2)
C5—C6—C1120.2 (3)O4—C16—C17121.1 (2)
C5—C6—H6119.9N4—C16—C17117.8 (2)
C1—C6—H6119.9C22—C17—C18119.0 (2)
O1—C7—N1121.3 (2)C22—C17—C16124.1 (2)
O1—C7—C1121.7 (2)C18—C17—C16116.9 (2)
N1—C7—C1117.0 (2)C19—C18—C17120.5 (3)
N2—C8—N1116.1 (2)C19—C18—H18119.8
N2—C8—S1125.2 (2)C17—C18—H18119.8
N1—C8—S1118.66 (18)C20—C19—C18120.4 (2)
N2—C9—C10110.6 (2)C20—C19—H19119.8
N2—C9—H9A109.5C18—C19—H19119.8
C10—C9—H9A109.5C19—C20—C21120.1 (3)
N2—C9—H9B109.5C19—C20—H20120.0
C10—C9—H9B109.5C21—C20—H20120.0
H9A—C9—H9B108.1C20—C21—C22119.7 (3)
O2—C10—C9107.14 (19)C20—C21—H21120.1
O2—C10—H10A110.3C22—C21—H21120.1
C9—C10—H10A110.3C17—C22—C21120.3 (2)
O2—C10—H10B110.3C17—C22—H22119.8
C9—C10—H10B110.3C21—C22—H22119.8
O2—C11—C12—O365.0 (2)
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.82 (3)1.99 (3)2.648 (3)136 (2)
N3—H3···O40.83 (3)2.01 (3)2.632 (3)132 (3)
N4—H4···O2i0.82 (3)2.48 (3)3.290 (3)170 (2)
Symmetry codes: (i) −x+2, −y, −z+1.
Table 1
Hydrogen-bond geometry (Å, °)
top
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.82 (3)1.99 (3)2.648 (3)136 (2)
N3—H3···O40.83 (3)2.01 (3)2.632 (3)132 (3)
N4—H4···O2i0.82 (3)2.48 (3)3.290 (3)170 (2)
Symmetry codes: (i) −x+2, −y, −z+1.
Acknowledgements top

The authors thank the Agence Universitaire de la Francophonie for financial support (AUF-PSCI No.6314PS804).

references
References top

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