
Acta Cryst. (2009). E65, o488 [ doi:10.1107/S1600536809001391 ]
In the molecule of the title compound, C19H23N3O3, the six-membered rings are oriented at a dihedral angle of 73.06 (3)°. The cyclopentyl ring adopts an envelope conformation. In the crystal structure, intermolecular N-H
O and O-H
N hydrogen bonds link the molecules. In the tolyl ring, the H atoms and all but one of the C atoms are disordered over two positions and were refined with occupancies of 0.51 (3) and 0.49 (3).
The title compound was prepared by the reaction of p-tolylidene-Meldrum's acid (1 mmol) with 6-hydroxypyrimidin-4(3H)-one (1 mmol) and cyclopentanamine (1 mmol) at 373 K in glacial acetic acid under microwave irradiation (maximum power 250 W, initial power 100 W) for 20 min (yield; 87%, m.p. 547–549 K). Crystals suitable for X-ray analysis were obtained from an ethanol solution by slow evaporation.
In the tolyl ring, atoms C9-C14 and H9, H10, H12, H13, H14A, H14B, H14C were disordered over two positions. During the refinement process the disordered atoms were refined with occupancies of 0.51 (3) and 0.49 (3). H atoms were positioned geometrically, with O-H = 0.82 Å (for OH), N-H = 0.86 Å (for NH) and C-H = 0.93, 0.98, 0.97 and 0.96 Å for aromatic, methine, methylene and methyl H, respectively, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C,N,O), where x = 1.5 for methyl and OH H and x = 1.2 for all other H atoms.
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
| Fig. 1. The molecular structure of the title molecule, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. |
| C19H23N3O3 | F(000) = 728 |
| Mr = 341.40 | Dx = 1.220 Mg m−3 |
| Monoclinic, P21/c | Melting point = 547–549 K |
| Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
| a = 11.6798 (10) Å | Cell parameters from 2142 reflections |
| b = 14.8279 (16) Å | θ = 2.4–25.3° |
| c = 11.8422 (12) Å | µ = 0.08 mm−1 |
| β = 115.022 (2)° | T = 298 K |
| V = 1858.4 (3) Å3 | Block, colorless |
| Z = 4 | 0.40 × 0.38 × 0.23 mm |
| Bruker SMART CCD area-detector diffractometer | 3262 independent reflections |
| Radiation source: fine-focus sealed tube | 1965 reflections with I > 2σ(I) |
| graphite | Rint = 0.034 |
| φ and ω scans | θmax = 25.0°, θmin = 1.9° |
| Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −13→13 |
| Tmin = 0.967, Tmax = 0.981 | k = −17→9 |
| 9104 measured reflections | l = −14→14 |
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.130 | H-atom parameters constrained |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.0557P)2 + 0.3901P] where P = (Fo2 + 2Fc2)/3 |
| 3262 reflections | (Δ/σ)max = 0.001 |
| 281 parameters | Δρmax = 0.17 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| C19H23N3O3 | V = 1858.4 (3) Å3 |
| Mr = 341.40 | Z = 4 |
| Monoclinic, P21/c | Mo Kα radiation |
| a = 11.6798 (10) Å | µ = 0.08 mm−1 |
| b = 14.8279 (16) Å | T = 298 K |
| c = 11.8422 (12) Å | 0.40 × 0.38 × 0.23 mm |
| β = 115.022 (2)° |
| Bruker SMART CCD area-detector diffractometer | 3262 independent reflections |
| Absorption correction: multi-scan (SADABS; Bruker, 1998) | 1965 reflections with I > 2σ(I) |
| Tmin = 0.967, Tmax = 0.981 | Rint = 0.034 |
| 9104 measured reflections | θmax = 25.0° |
| R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
| wR(F2) = 0.130 | Δρmax = 0.17 e Å−3 |
| S = 1.03 | Δρmin = −0.21 e Å−3 |
| 3262 reflections | Absolute structure: ? |
| 281 parameters | Flack parameter: ? |
| 0 restraints | Rogers parameter: ? |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| O1 | 0.51033 (15) | 0.18524 (10) | 0.24325 (14) | 0.0478 (4) | |
| O2 | 0.58111 (16) | 0.48802 (10) | 0.17050 (14) | 0.0519 (5) | |
| H2 | 0.5650 | 0.5192 | 0.1084 | 0.078* | |
| O3 | 0.36199 (16) | 0.38438 (11) | 0.37082 (15) | 0.0565 (5) | |
| N1 | 0.45054 (17) | 0.24273 (12) | 0.04951 (16) | 0.0415 (5) | |
| H1 | 0.4223 | 0.1907 | 0.0181 | 0.050* | |
| N2 | 0.47888 (17) | 0.39142 (12) | 0.00944 (16) | 0.0407 (5) | |
| N3 | 0.36553 (17) | 0.50839 (13) | 0.26475 (16) | 0.0436 (5) | |
| H3 | 0.4105 | 0.5496 | 0.2520 | 0.052* | |
| C1 | 0.5061 (2) | 0.25152 (15) | 0.1789 (2) | 0.0366 (5) | |
| C2 | 0.5537 (2) | 0.33982 (14) | 0.22258 (19) | 0.0348 (5) | |
| C3 | 0.5389 (2) | 0.40604 (15) | 0.13651 (19) | 0.0369 (5) | |
| C4 | 0.4392 (2) | 0.31040 (16) | −0.0272 (2) | 0.0430 (6) | |
| H4 | 0.4004 | 0.2992 | −0.1125 | 0.052* | |
| C5 | 0.4234 (2) | 0.44262 (15) | 0.3448 (2) | 0.0414 (6) | |
| C6 | 0.5653 (2) | 0.44127 (15) | 0.4011 (2) | 0.0433 (6) | |
| H6A | 0.5977 | 0.4429 | 0.4912 | 0.052* | |
| H6B | 0.5957 | 0.4945 | 0.3746 | 0.052* | |
| C7 | 0.6153 (2) | 0.35575 (14) | 0.36151 (19) | 0.0385 (5) | |
| H7 | 0.5905 | 0.3047 | 0.3988 | 0.046* | |
| C8 | 0.7589 (2) | 0.35570 (16) | 0.4198 (2) | 0.0493 (6) | |
| C9 | 0.822 (3) | 0.3612 (18) | 0.342 (3) | 0.059 (4) | 0.51 (3) |
| H9 | 0.7759 | 0.3626 | 0.2559 | 0.071* | 0.51 (3) |
| C9' | 0.838 (3) | 0.382 (2) | 0.370 (3) | 0.069 (5) | 0.49 (3) |
| H9' | 0.8043 | 0.4040 | 0.2884 | 0.082* | 0.49 (3) |
| C10 | 0.952 (3) | 0.3646 (19) | 0.392 (3) | 0.074 (4) | 0.51 (3) |
| H10 | 0.9918 | 0.3698 | 0.3383 | 0.089* | 0.51 (3) |
| C10' | 0.970 (3) | 0.377 (2) | 0.437 (2) | 0.083 (6) | 0.49 (3) |
| H10' | 1.0222 | 0.3923 | 0.3991 | 0.100* | 0.49 (3) |
| C11 | 1.025 (4) | 0.361 (2) | 0.517 (3) | 0.072 (6) | 0.51 (3) |
| C11' | 1.023 (4) | 0.350 (3) | 0.561 (3) | 0.080 (8) | 0.49 (3) |
| C12 | 0.964 (2) | 0.3535 (19) | 0.596 (2) | 0.082 (5) | 0.51 (3) |
| H12 | 1.0112 | 0.3506 | 0.6818 | 0.098* | 0.51 (3) |
| C12' | 0.943 (3) | 0.3240 (16) | 0.611 (2) | 0.084 (5) | 0.49 (3) |
| H12' | 0.9764 | 0.3037 | 0.6925 | 0.101* | 0.49 (3) |
| C13 | 0.833 (4) | 0.351 (2) | 0.545 (4) | 0.070 (6) | 0.51 (3) |
| H13 | 0.7942 | 0.3453 | 0.5991 | 0.084* | 0.51 (3) |
| C13' | 0.813 (4) | 0.327 (2) | 0.544 (4) | 0.070 (5) | 0.49 (3) |
| H13' | 0.7611 | 0.3088 | 0.5821 | 0.084* | 0.49 (3) |
| C14 | 1.1676 (18) | 0.3628 (15) | 0.573 (2) | 0.110 (5) | 0.51 (3) |
| H14A | 1.1995 | 0.3023 | 0.5824 | 0.164* | 0.51 (3) |
| H14B | 1.1991 | 0.3914 | 0.6534 | 0.164* | 0.51 (3) |
| H14C | 1.1948 | 0.3960 | 0.5194 | 0.164* | 0.51 (3) |
| C14' | 1.1691 (19) | 0.3465 (18) | 0.635 (2) | 0.121 (7) | 0.49 (3) |
| H14D | 1.1905 | 0.3341 | 0.7209 | 0.181* | 0.49 (3) |
| H14E | 1.2045 | 0.4035 | 0.6277 | 0.181* | 0.49 (3) |
| H14F | 1.2024 | 0.2998 | 0.6011 | 0.181* | 0.49 (3) |
| C15 | 0.2281 (2) | 0.51310 (17) | 0.1977 (2) | 0.0539 (7) | |
| H15 | 0.1881 | 0.5034 | 0.2546 | 0.065* | |
| C16 | 0.1793 (3) | 0.4455 (2) | 0.0910 (3) | 0.0839 (10) | |
| H16A | 0.2334 | 0.3927 | 0.1108 | 0.101* | |
| H16B | 0.0941 | 0.4264 | 0.0743 | 0.101* | |
| C17 | 0.1810 (3) | 0.4946 (3) | −0.0198 (3) | 0.1004 (12) | |
| H17A | 0.2484 | 0.4714 | −0.0390 | 0.121* | |
| H17B | 0.1014 | 0.4860 | −0.0921 | 0.121* | |
| C18 | 0.2015 (3) | 0.5919 (3) | 0.0119 (3) | 0.0961 (12) | |
| H18A | 0.1392 | 0.6282 | −0.0534 | 0.115* | |
| H18B | 0.2851 | 0.6103 | 0.0221 | 0.115* | |
| C19 | 0.1885 (3) | 0.60299 (19) | 0.1318 (3) | 0.0689 (8) | |
| H19A | 0.1018 | 0.6169 | 0.1158 | 0.083* | |
| H19B | 0.2428 | 0.6510 | 0.1816 | 0.083* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0550 (12) | 0.0301 (10) | 0.0396 (11) | −0.0049 (9) | 0.0201 (9) | −0.0058 (9) |
| N2 | 0.0532 (12) | 0.0373 (11) | 0.0322 (10) | −0.0031 (9) | 0.0187 (9) | −0.0019 (8) |
| N3 | 0.0434 (12) | 0.0401 (11) | 0.0451 (11) | 0.0029 (9) | 0.0167 (9) | 0.0092 (9) |
| O1 | 0.0608 (11) | 0.0341 (9) | 0.0479 (10) | 0.0002 (8) | 0.0222 (8) | 0.0041 (7) |
| O2 | 0.0760 (12) | 0.0353 (9) | 0.0387 (9) | −0.0096 (8) | 0.0189 (8) | 0.0005 (7) |
| O3 | 0.0634 (12) | 0.0471 (10) | 0.0624 (11) | 0.0063 (9) | 0.0300 (9) | 0.0180 (9) |
| C1 | 0.0384 (13) | 0.0360 (13) | 0.0370 (13) | 0.0040 (10) | 0.0176 (10) | −0.0014 (10) |
| C2 | 0.0396 (13) | 0.0326 (12) | 0.0320 (12) | 0.0015 (10) | 0.0150 (10) | −0.0005 (10) |
| C3 | 0.0435 (13) | 0.0342 (13) | 0.0324 (13) | −0.0015 (10) | 0.0155 (11) | −0.0039 (10) |
| C4 | 0.0534 (15) | 0.0426 (15) | 0.0342 (13) | −0.0021 (12) | 0.0196 (11) | −0.0062 (11) |
| C5 | 0.0538 (15) | 0.0362 (13) | 0.0349 (13) | 0.0062 (12) | 0.0195 (11) | −0.0003 (11) |
| C6 | 0.0509 (15) | 0.0420 (14) | 0.0310 (12) | 0.0038 (11) | 0.0114 (11) | −0.0028 (10) |
| C7 | 0.0445 (14) | 0.0340 (12) | 0.0323 (12) | 0.0025 (10) | 0.0116 (10) | 0.0012 (10) |
| C8 | 0.0484 (15) | 0.0392 (14) | 0.0495 (16) | 0.0021 (12) | 0.0102 (13) | −0.0047 (12) |
| C9 | 0.041 (8) | 0.064 (9) | 0.064 (9) | −0.007 (6) | 0.014 (7) | −0.012 (6) |
| C9' | 0.049 (7) | 0.076 (14) | 0.062 (11) | −0.009 (9) | 0.007 (8) | 0.001 (7) |
| C10 | 0.047 (9) | 0.092 (9) | 0.070 (13) | −0.004 (6) | 0.013 (10) | −0.010 (8) |
| C10' | 0.047 (10) | 0.108 (12) | 0.074 (19) | −0.011 (7) | 0.006 (12) | −0.012 (11) |
| C11 | 0.050 (8) | 0.084 (9) | 0.067 (18) | −0.003 (6) | 0.009 (12) | 0.005 (13) |
| C11' | 0.054 (10) | 0.090 (13) | 0.071 (18) | 0.006 (10) | 0.003 (12) | −0.003 (12) |
| C12 | 0.054 (10) | 0.097 (14) | 0.068 (9) | −0.011 (10) | 0.000 (7) | −0.004 (8) |
| C12' | 0.058 (10) | 0.081 (11) | 0.078 (7) | −0.006 (7) | −0.007 (6) | 0.014 (7) |
| C13 | 0.054 (12) | 0.078 (15) | 0.057 (6) | −0.006 (9) | 0.003 (7) | −0.004 (10) |
| C13' | 0.054 (12) | 0.078 (15) | 0.058 (6) | −0.006 (9) | 0.003 (7) | −0.003 (10) |
| C14 | 0.056 (5) | 0.126 (9) | 0.106 (13) | 0.000 (5) | −0.005 (9) | 0.007 (10) |
| C14' | 0.054 (5) | 0.150 (14) | 0.112 (13) | 0.000 (7) | −0.010 (10) | −0.010 (12) |
| C15 | 0.0443 (15) | 0.0508 (16) | 0.0633 (17) | 0.0038 (12) | 0.0195 (13) | 0.0137 (13) |
| C16 | 0.0547 (19) | 0.068 (2) | 0.097 (3) | −0.0028 (16) | 0.0014 (17) | −0.0018 (19) |
| C17 | 0.084 (3) | 0.133 (4) | 0.082 (3) | 0.023 (2) | 0.033 (2) | −0.003 (2) |
| C18 | 0.077 (2) | 0.119 (3) | 0.078 (2) | −0.004 (2) | 0.0194 (19) | 0.036 (2) |
| C19 | 0.0533 (17) | 0.0587 (18) | 0.083 (2) | 0.0101 (14) | 0.0174 (15) | 0.0209 (16) |
| O1—C1 | 1.232 (2) | C12—C13 | 1.39 (5) |
| O2—C3 | 1.310 (2) | C12—H12 | 0.9300 |
| O2—H2 | 0.8200 | C13—H13 | 0.9300 |
| O3—C5 | 1.242 (3) | C14—H14A | 0.9600 |
| N1—C4 | 1.322 (3) | C14—H14B | 0.9600 |
| N1—C1 | 1.395 (3) | C14—H14C | 0.9600 |
| N1—H1 | 0.8600 | C9'—C10' | 1.41 (5) |
| N2—C4 | 1.295 (3) | C9'—H9' | 0.9300 |
| N2—C3 | 1.382 (3) | C10'—C11' | 1.38 (3) |
| N3—C5 | 1.328 (3) | C10'—H10' | 0.9300 |
| N3—C15 | 1.460 (3) | C11'—C12' | 1.35 (4) |
| N3—H3 | 0.8600 | C11'—C14' | 1.56 (4) |
| C1—C2 | 1.431 (3) | C12'—C13' | 1.38 (6) |
| C2—C3 | 1.373 (3) | C12'—H12' | 0.9300 |
| C2—C7 | 1.510 (3) | C13'—H13' | 0.9300 |
| C4—H4 | 0.9300 | C14'—H14D | 0.9600 |
| C5—C6 | 1.503 (3) | C14'—H14E | 0.9600 |
| C6—C7 | 1.549 (3) | C14'—H14F | 0.9600 |
| C6—H6A | 0.9700 | C15—C19 | 1.515 (3) |
| C6—H6B | 0.9700 | C15—C16 | 1.523 (4) |
| C7—C8 | 1.520 (3) | C15—H15 | 0.9800 |
| C7—H7 | 0.9800 | C16—C17 | 1.509 (5) |
| C8—C9' | 1.35 (4) | C16—H16A | 0.9700 |
| C8—C13 | 1.37 (4) | C16—H16B | 0.9700 |
| C8—C13' | 1.40 (4) | C17—C18 | 1.485 (5) |
| C8—C9 | 1.41 (3) | C17—H17A | 0.9700 |
| C9—C10 | 1.38 (5) | C17—H17B | 0.9700 |
| C9—H9 | 0.9300 | C18—C19 | 1.500 (4) |
| C10—C11 | 1.37 (3) | C18—H18A | 0.9700 |
| C10—H10 | 0.9300 | C18—H18B | 0.9700 |
| C11—C12 | 1.39 (4) | C19—H19A | 0.9700 |
| C11—C14 | 1.51 (4) | C19—H19B | 0.9700 |
| C3—O2—H2 | 109.5 | C11—C14—H14A | 109.5 |
| C4—N1—C1 | 123.31 (19) | C11—C14—H14B | 109.5 |
| C4—N1—H1 | 118.3 | H14A—C14—H14B | 109.5 |
| C1—N1—H1 | 118.3 | C11—C14—H14C | 109.5 |
| C4—N2—C3 | 117.10 (19) | H14A—C14—H14C | 109.5 |
| C5—N3—C15 | 122.2 (2) | H14B—C14—H14C | 109.5 |
| C5—N3—H3 | 118.9 | C8—C9'—C10' | 121 (3) |
| C15—N3—H3 | 118.9 | C8—C9'—H9' | 119.3 |
| O1—C1—N1 | 118.9 (2) | C10'—C9'—H9' | 119.3 |
| O1—C1—C2 | 126.8 (2) | C11'—C10'—C9' | 121 (3) |
| N1—C1—C2 | 114.31 (19) | C11'—C10'—H10' | 119.7 |
| C3—C2—C1 | 118.59 (19) | C9'—C10'—H10' | 119.7 |
| C3—C2—C7 | 123.34 (18) | C12'—C11'—C10' | 118 (3) |
| C1—C2—C7 | 118.06 (18) | C12'—C11'—C14' | 123 (2) |
| O2—C3—C2 | 121.54 (19) | C10'—C11'—C14' | 120 (2) |
| O2—C3—N2 | 115.58 (18) | C11'—C12'—C13' | 123 (3) |
| C2—C3—N2 | 122.88 (19) | C11'—C12'—H12' | 118.7 |
| N2—C4—N1 | 123.8 (2) | C13'—C12'—H12' | 118.7 |
| N2—C4—H4 | 118.1 | C12'—C13'—C8 | 120 (3) |
| N1—C4—H4 | 118.1 | C12'—C13'—H13' | 119.9 |
| O3—C5—N3 | 121.0 (2) | C8—C13'—H13' | 119.9 |
| O3—C5—C6 | 121.7 (2) | C11'—C14'—H14D | 109.5 |
| N3—C5—C6 | 117.3 (2) | C11'—C14'—H14E | 109.5 |
| C5—C6—C7 | 111.29 (18) | H14D—C14'—H14E | 109.5 |
| C5—C6—H6A | 109.4 | C11'—C14'—H14F | 109.5 |
| C7—C6—H6A | 109.4 | H14D—C14'—H14F | 109.5 |
| C5—C6—H6B | 109.4 | H14E—C14'—H14F | 109.5 |
| C7—C6—H6B | 109.4 | N3—C15—C19 | 110.4 (2) |
| H6A—C6—H6B | 108.0 | N3—C15—C16 | 111.1 (2) |
| C2—C7—C8 | 114.88 (19) | C19—C15—C16 | 103.1 (2) |
| C2—C7—C6 | 112.99 (17) | N3—C15—H15 | 110.7 |
| C8—C7—C6 | 110.36 (18) | C19—C15—H15 | 110.7 |
| C2—C7—H7 | 105.9 | C16—C15—H15 | 110.7 |
| C8—C7—H7 | 105.9 | C17—C16—C15 | 105.4 (3) |
| C6—C7—H7 | 105.9 | C17—C16—H16A | 110.7 |
| C9'—C8—C13 | 104.8 (18) | C15—C16—H16A | 110.7 |
| C9'—C8—C13' | 118 (2) | C17—C16—H16B | 110.7 |
| C13—C8—C9 | 116 (2) | C15—C16—H16B | 110.7 |
| C13'—C8—C9 | 125 (2) | H16A—C16—H16B | 108.8 |
| C9'—C8—C7 | 129.0 (14) | C18—C17—C16 | 108.0 (3) |
| C13—C8—C7 | 124.3 (17) | C18—C17—H17A | 110.1 |
| C13'—C8—C7 | 113.3 (17) | C16—C17—H17A | 110.1 |
| C9—C8—C7 | 119.2 (12) | C18—C17—H17B | 110.1 |
| C10—C9—C8 | 121 (2) | C16—C17—H17B | 110.1 |
| C10—C9—H9 | 119.6 | H17A—C17—H17B | 108.4 |
| C8—C9—H9 | 119.6 | C17—C18—C19 | 106.0 (3) |
| C11—C10—C9 | 122 (3) | C17—C18—H18A | 110.5 |
| C11—C10—H10 | 119.0 | C19—C18—H18A | 110.5 |
| C9—C10—H10 | 119.0 | C17—C18—H18B | 110.5 |
| C10—C11—C12 | 118 (3) | C19—C18—H18B | 110.5 |
| C10—C11—C14 | 123 (3) | H18A—C18—H18B | 108.7 |
| C12—C11—C14 | 119 (2) | C18—C19—C15 | 105.1 (3) |
| C13—C12—C11 | 120 (3) | C18—C19—H19A | 110.7 |
| C13—C12—H12 | 120.1 | C15—C19—H19A | 110.7 |
| C11—C12—H12 | 120.1 | C18—C19—H19B | 110.7 |
| C8—C13—C12 | 123 (3) | C15—C19—H19B | 110.7 |
| C8—C13—H13 | 118.5 | H19A—C19—H19B | 108.8 |
| C12—C13—H13 | 118.5 | ||
| C4—N1—C1—O1 | 178.5 (2) | C7—C8—C9—C10 | 177.6 (19) |
| C4—N1—C1—C2 | −1.8 (3) | C8—C9—C10—C11 | 2(4) |
| O1—C1—C2—C3 | −179.2 (2) | C9—C10—C11—C12 | 0(5) |
| N1—C1—C2—C3 | 1.2 (3) | C9—C10—C11—C14 | 179 (3) |
| O1—C1—C2—C7 | −0.4 (3) | C10—C11—C12—C13 | 0(5) |
| N1—C1—C2—C7 | 179.93 (18) | C14—C11—C12—C13 | −180 (3) |
| C1—C2—C3—O2 | −179.52 (19) | C9'—C8—C13—C12 | −13 (3) |
| C7—C2—C3—O2 | 1.8 (3) | C13'—C8—C13—C12 | 126 (14) |
| C1—C2—C3—N2 | 0.7 (3) | C9—C8—C13—C12 | 2(4) |
| C7—C2—C3—N2 | −178.0 (2) | C7—C8—C13—C12 | −178 (2) |
| C4—N2—C3—O2 | 178.1 (2) | C11—C12—C13—C8 | −1(5) |
| C4—N2—C3—C2 | −2.1 (3) | C13—C8—C9'—C10' | 16 (3) |
| C3—N2—C4—N1 | 1.5 (3) | C13'—C8—C9'—C10' | 3(3) |
| C1—N1—C4—N2 | 0.5 (3) | C9—C8—C9'—C10' | −118 (10) |
| C15—N3—C5—O3 | −3.8 (3) | C7—C8—C9'—C10' | −179.8 (17) |
| C15—N3—C5—C6 | 175.70 (19) | C8—C9'—C10'—C11' | −4(5) |
| O3—C5—C6—C7 | 63.5 (3) | C9'—C10'—C11'—C12' | 4(5) |
| N3—C5—C6—C7 | −115.9 (2) | C9'—C10'—C11'—C14' | −179 (2) |
| C3—C2—C7—C8 | −80.4 (3) | C10'—C11'—C12'—C13' | −2(5) |
| C1—C2—C7—C8 | 100.9 (2) | C14'—C11'—C12'—C13' | −179 (3) |
| C3—C2—C7—C6 | 47.4 (3) | C11'—C12'—C13'—C8 | 1(5) |
| C1—C2—C7—C6 | −131.3 (2) | C9'—C8—C13'—C12' | −1(4) |
| C5—C6—C7—C2 | 50.0 (2) | C13—C8—C13'—C12' | −47 (10) |
| C5—C6—C7—C8 | −179.86 (19) | C9—C8—C13'—C12' | 18 (4) |
| C2—C7—C8—C9' | 31.9 (16) | C7—C8—C13'—C12' | −179 (2) |
| C6—C7—C8—C9' | −97.3 (16) | C5—N3—C15—C19 | 169.8 (2) |
| C2—C7—C8—C13 | −166.3 (17) | C5—N3—C15—C16 | −76.5 (3) |
| C6—C7—C8—C13 | 64.5 (18) | N3—C15—C16—C17 | −89.0 (3) |
| C2—C7—C8—C13' | −150.5 (16) | C19—C15—C16—C17 | 29.2 (3) |
| C6—C7—C8—C13' | 80.4 (16) | C15—C16—C17—C18 | −12.2 (4) |
| C2—C7—C8—C9 | 13.8 (13) | C16—C17—C18—C19 | −10.0 (4) |
| C6—C7—C8—C9 | −115.4 (13) | C17—C18—C19—C15 | 28.6 (3) |
| C9'—C8—C9—C10 | 50 (8) | N3—C15—C19—C18 | 83.0 (3) |
| C13—C8—C9—C10 | −2(3) | C16—C15—C19—C18 | −35.7 (3) |
| C13'—C8—C9—C10 | −20 (3) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O3i | 0.86 | 1.93 | 2.692 (3) | 147 |
| O2—H2···N2ii | 0.82 | 1.83 | 2.639 (3) | 167 |
| N3—H3···O1iii | 0.86 | 2.20 | 3.017 (3) | 158 |
| Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+1, −y+1, −z; (iii) −x+1, y+1/2, −z+1/2. |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O3i | 0.86 | 1.93 | 2.692 (3) | 147 |
| O2—H2···N2ii | 0.82 | 1.83 | 2.639 (3) | 167 |
| N3—H3···O1iii | 0.86 | 2.20 | 3.017 (3) | 158 |
| Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+1, −y+1, −z; (iii) −x+1, y+1/2, −z+1/2. |
We thank the Natural Science Foundation of China (grant No. 20672090) and the Natural Science Foundation of Jiangsu Province (grant No. BK2006033).
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
Bruker (1998). SMART, SAINT and SADABS. Bruker AXS, Inc., Madison, Wisconsin, USA.
Erian, A. W. (1993). Chem. Rev. 93, 1991–2005.
Janeba, Z., Balzarini, J., Andrei, G., Robert Snoeck, R., De Clercq, E. & Robins, M. J. (2005). J. Med. Chem. 48, 4690–4696.
Johar, M., Manning, T., Kunimoto, D. Y. & Kumar, R. (2005). Bioorg. Med. Chem. 13, 6663—6671.
Lagoja, I. M. (2005). Chem. Biodivers. 2, 1–50.
Mathews, A. & Asokan, C. V. (2007). Tetrahedron, 63, 7845–7849.
Michael, J. P. (2005). Nat. Prod. Rep. 22, 627–646.
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.
Soloducho, J., Doskocz, J., Cabaj, J. & Roszak, S. (2003). Tetrahedron, 59, 4761–4766.
The pyrimidines and their derivatives as a class of extremely important heterocyclic compounds are used in a wide array of synthetic and industrial applications. Not only they are an integral part of the genetic materials, viz. DNA and RNA as nucleotides and nucleosides but also play critical roles especially in pharmaceutical fields (Johar et al., 2005; Janeba et al., 2005). Some pyrimidine derivatives can give stable and good quality nanomaterials having many important electrical and optical properties (Soloducho et al., 2003; Mathews & Asokan, 2007), and also used as functional materials (Lagoja, 2005; Michael, 2005; Erian, 1993). We report herein the crystal structure of the title compound.
In the molecule of the title compound (Fig 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges. Rings A (N1/N2/C1-C4) and B (C8-C13) are, of course, planar, and they are oriented at a dihedral angle of 73.06 (3)°. The five-membered ring C (C15-C19) adopts envelope conformation with C15 atom displaced by -0.511 (3) Å from the plane of the other ring atoms.
In the crystal structure, intermolecular N-H···O and O-H···N hydrogen bonds (Table 1) link the molecules, in which they may be effective in the stabilization of the structure.