supplementary materials


hg2504 scheme

Acta Cryst. (2009). E65, o1241    [ doi:10.1107/S1600536809016547 ]

2,8-Dimethyltricyclo[5.3.1.13,9]dodecane-syn-2,syn-8-diol-propanoic acid (1/1)

Y. Mizobe, R. Bishop, D. C. Craig and M. L. Scudder

Abstract top

The racemic title compound, C14H24O2·C3H6O2, crystallizes in the monoclinic space group P21/c as a 1:1 diol/carboxylic acid cocrystal, A-B. The lattice incorporates infinite chains of the alcohol-carboxylic acid-alcohol supramolecular synthon, (...O-H...O=C(R)-O-H...O-H...), in which the hydrogen-bonded molecules (A-B-A)n surround a pseudo-threefold screw axis. The carboxylic acid group functions like an extended alcohol hydroxy group. Each diol, A, takes part in two such threefold screw arrangements, leading to a hydrogen-bonded layer structure, with adjacent layers containing diol molecules of opposite handedness. The central C atom of the propano bridge is disordered over two sites of occupancies 0.75 (1) and 0.25 (1). The methyl group of the propanoic acid molecule is disordered over two sites of occupancies 0.68 (1) and 0.32 (1).

Comment top

The diol component, A, of the title compound, A—B, is a member of the helical tubuland host family, a major characteristic of which is formation of lattice inclusion compounds in the chiral space group P3121 (or its enantiomorph P3221) (Bishop, 2009). A forms this structure when crystallized from non-protic solvents (Dance et al., 1986). Some, but by no means all, of this family of diols can also form hydrogen-bonded co-crystals when crystallized from protic solvents. Two members of this diol family have been found previously to form such 1:1 compounds with carboxylic acids (Alshahateet et al., 2004; Yue et al., 2006). These co-crystals utilize infinite chains of an alcohol–carboxylic acid–alcohol supramolecular sython, (···O—H···O C(R)—O—H···O—H···), in which the carboxylic acid group behaves as if it were an extended alcohol hydroxy group. The diol, A, in the title compound is now found to be the third helical tubuland diol to behave in this manner (Fig. 1). Its 1:1 co-crystals with propanoic acid, A—B, contain chains of hydrogen-bonded molecules (A—B—A-)n surrounding pseudo-threefold screw axes resulting in formation of chiral layers as each diol, A, hydrogen bonds within two such threefold screw arrangements (Figs. 2 and 3). Adjacent layers contain diol molecules with the opposite handedness. The resultant lattice is essentially isostructural with the previous examples in P21/c found to use this novel supramolecular synthon.

Related literature top

For related literature on the diol component of the title compound, see: Bishop (2009); Dance et al. (1986). Two members of this diol family have been found previously to form such 1:1 compounds with carboxylic acids, see: Alshahateet et al. (2004); Yue et al. (2006).

Experimental top

Racemic 2,8-dimethyltricyclo[5.3.1.13,9]dodecane-syn-2,syn-8-diol was prepared as described (Dance et al., 1986) and the X-ray quality co-crystals obtained by slow concentration of a propanoic acid solution.

Refinement top

The central C atom of the propano bridge (C13) was disordered over two sites of occupancies 0.75 (1) and 0.25. For the propanoic acid molecules, the methyl group, C3P, was disordered over two sites of occupancies 0.68 (1) and 0.32. H atoms attached to C were included at calculated positions (C—H = 1.0 Å). The disorder of C13 was taken into account when calculating the H atom positions and occupancies for C13 and the adjacent C12 and C14. The hydroxy H atoms were located on a difference map, and were then fixed at a position along the O···O vector with O—H = 1.0 Å. All H atoms were refined with isotropic thermal parameters equivalent to those of the atom to which they were bonded.

Computing details top

Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell refinement: CAD-4 Softwar (Enraf–Nonius, 1989); data reduction: local program; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: RAELS (Rae, 2000); molecular graphics: ORTEP-3 (Farrugia, 1997) and CrystalMaker (Palmer, 2005); software used to prepare material for publication: local programs.

Figures top
[Figure 1] Fig. 1. Molecular structure of the A and B components of the title compound, with ellipsoids drawn at the 30% probability level.
[Figure 2] Fig. 2. One layer of the structure showing the intermolecular hydrogen bonding linking A and B molecules in chains. C atoms of the propanoic acid are coloured pink.
[Figure 3] Fig. 3. The orthogonal view showing the pseudo 31 symmetric nature of the arrangement in two adjacent layers. C atoms of the propanoic acid are coloured pink.
2,8-Dimethyltricyclo[5.3.1.13,9]dodecane-syn-2,syn-8-diol– propanoic acid (1/1) top
Crystal data top
C14H24O2·C3H6O2F000 = 656.0
Mr = 298.4Dx = 1.17 Mg m3
Monoclinic, P21/cMo Kα radiation
λ = 0.71073 Å
a = 7.390 (4) ÅCell parameters from 11 reflections
b = 13.218 (5) Åθ = 11–12º
c = 18.469 (8) ŵ = 0.08 mm1
β = 110.23 (2)ºT = 294 K
V = 1693 (1) Å3Irregular, colourless
Z = 40.10 mm (radius)
Data collection top
Enraf–Nonius CAD-4
diffractometer
θmax = 25º
ω/2θ scansh = 0→8
Absorption correction: nonek = 0→15
3188 measured reflectionsl = 22→22
2942 independent reflections1 standard reflections
1786 reflections with I > 2σ(I) every 30 min
Rint = 0.014 intensity decay: 29%
Refinement top
Refinement on FH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.056  w = 1/[σ2(F) + 0.0004F2]
wR(F2) = 0.070(Δ/σ)max = 0.003
S = 1.32Δρmax = 0.39 e Å3
2942 reflectionsΔρmin = 0.41 e Å3
199 parametersExtinction correction: none
Crystal data top
C14H24O2·C3H6O2V = 1693 (1) Å3
Mr = 298.4Z = 4
Monoclinic, P21/cMo Kα
a = 7.390 (4) ŵ = 0.08 mm1
b = 13.218 (5) ÅT = 294 K
c = 18.469 (8) Å0.10 mm (radius)
β = 110.23 (2)º
Data collection top
Enraf–Nonius CAD-4
diffractometer
Rint = 0.014
Absorption correction: none1 standard reflections
3188 measured reflections every 30 min
2942 independent reflections intensity decay: 29%
1786 reflections with I > 2σ(I)
Refinement top
R[F2 > 2σ(F2)] = 0.056199 parameters
wR(F2) = 0.070H-atom parameters constrained
S = 1.32Δρmax = 0.39 e Å3
2942 reflectionsΔρmin = 0.41 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
O10.7617 (2)0.2866 (1)0.2685 (1)0.0659 (5)
O20.4331 (2)0.66382 (11)0.16336 (9)0.0559 (5)
C10.4896 (3)0.3428 (2)0.1636 (1)0.0495 (6)
C20.7107 (3)0.3385 (2)0.1951 (1)0.0496 (6)
C30.8088 (3)0.4441 (2)0.2035 (1)0.0513 (6)
C40.6996 (3)0.5155 (2)0.1356 (1)0.0503 (6)
C50.4789 (3)0.5105 (2)0.1032 (1)0.0475 (6)
C60.3662 (3)0.5599 (2)0.1493 (1)0.0472 (6)
C70.3899 (3)0.5039 (2)0.2262 (1)0.0528 (6)
C80.3898 (4)0.3878 (2)0.2161 (1)0.0579 (7)
C90.4195 (3)0.4001 (2)0.0871 (1)0.0536 (6)
C100.7824 (4)0.2728 (2)0.1425 (2)0.0718 (8)
C110.1519 (4)0.5658 (2)0.1009 (2)0.0656 (8)
C120.8701 (4)0.4943 (2)0.2831 (2)0.0695 (8)
C130.7455 (5)0.5768 (3)0.2979 (2)0.067 (1)0.75
C13'0.7388 (9)0.4872 (7)0.3304 (4)0.067 (1)0.25
C140.5481 (5)0.5443 (2)0.2994 (1)0.0707 (8)
O1P0.5377 (3)0.7775 (1)0.0674 (1)0.0740 (6)
O2P0.8391 (3)0.7734 (2)0.1482 (1)0.0801 (6)
C1P0.7228 (4)0.7995 (2)0.0878 (2)0.0667 (7)
C2P0.7710 (5)0.8619 (3)0.0287 (2)0.096 (1)
C3P0.9587 (9)0.8359 (5)0.0180 (3)0.119 (2)0.68
C3'P0.6746 (18)0.9630 (8)0.0220 (6)0.119 (2)0.32
H1010.90310.28190.29800.066
H1020.36220.70850.18820.056
HC10.44270.27160.15230.049
HC30.93350.43010.19550.051
H1C40.74660.50010.09210.050
H2C40.73570.58650.15360.050
HC50.43770.54540.05200.047
HC70.26660.51810.23540.053
H1C80.25200.36570.19530.058
H2C80.45350.35800.26860.058
H1C90.27590.39510.06360.054
H2C90.47950.37060.05090.054
H1C100.74990.30610.09090.072
H2C100.92540.26430.16600.072
H3C100.71880.20500.13600.072
H1C110.09790.49580.08940.066
H2C110.08200.60350.13010.066
H3C110.13540.60180.05140.066
H1C121.00070.52420.29290.0690.75
H2C120.87940.43940.32150.0690.75
H1'C120.88860.56790.27520.0690.25
H2'C120.99630.46350.31470.0690.25
H1C130.72370.62890.25650.0670.75
H2C130.81850.60790.34910.0670.75
H1C13'0.81140.51420.38310.0670.25
H2C13'0.70850.41410.33420.0670.25
H1C140.57270.48970.33910.0710.75
H2C140.49210.60470.31660.0710.75
H1'C140.49200.54560.34150.0710.25
H2'C140.57850.61500.28800.0710.25
H101P0.49800.73440.10380.074
H1C2P0.77700.93450.04470.0960.68
H2C2P0.66490.85270.02210.0960.68
H1'C2P0.72360.82670.02240.0960.32
H2'C2P0.91380.87130.04520.0960.32
H1C3P0.97770.88110.02220.1190.68
H2C3P1.06750.84560.06790.1190.68
H3C3P0.95540.76380.00110.1190.68
H1C3P'0.70561.00500.01720.1190.32
H2C3P'0.53180.95330.00560.1190.32
H3C3P'0.72190.99790.07320.1190.32
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.052 (1)0.071 (1)0.071 (1)0.0012 (9)0.0151 (9)0.0241 (9)
O20.060 (1)0.046 (1)0.068 (1)0.0018 (8)0.0298 (8)0.0045 (8)
C10.049 (1)0.041 (1)0.059 (1)0.008 (1)0.021 (1)0.002 (1)
C20.050 (1)0.045 (1)0.057 (1)0.001 (1)0.022 (1)0.003 (1)
C30.046 (1)0.048 (1)0.061 (2)0.002 (1)0.020 (1)0.000 (1)
C40.051 (1)0.047 (1)0.060 (2)0.002 (1)0.028 (1)0.000 (1)
C50.051 (1)0.049 (1)0.044 (1)0.003 (1)0.019 (1)0.001 (1)
C60.047 (1)0.043 (1)0.054 (1)0.003 (1)0.020 (1)0.002 (1)
C70.053 (2)0.058 (1)0.056 (1)0.003 (1)0.030 (1)0.005 (1)
C80.054 (2)0.057 (2)0.070 (2)0.002 (1)0.031 (1)0.007 (1)
C90.054 (2)0.052 (1)0.053 (2)0.003 (1)0.016 (1)0.005 (1)
C100.067 (2)0.058 (2)0.099 (2)0.005 (1)0.039 (2)0.010 (2)
C110.047 (2)0.070 (2)0.074 (2)0.002 (1)0.014 (1)0.004 (1)
C120.059 (2)0.067 (2)0.068 (2)0.000 (1)0.003 (1)0.008 (1)
C130.069 (2)0.068 (2)0.055 (2)0.005 (2)0.008 (2)0.015 (2)
C13'0.069 (2)0.068 (2)0.055 (2)0.005 (2)0.008 (2)0.015 (2)
C140.087 (2)0.077 (2)0.049 (2)0.002 (2)0.025 (1)0.008 (1)
O1P0.068 (1)0.083 (1)0.066 (1)0.010 (1)0.0154 (9)0.008 (1)
O2P0.067 (1)0.087 (1)0.074 (1)0.013 (1)0.008 (1)0.011 (1)
C1P0.073 (2)0.058 (2)0.067 (2)0.012 (2)0.022 (2)0.002 (1)
C2P0.105 (3)0.099 (3)0.084 (2)0.020 (2)0.031 (2)0.017 (2)
C3P0.136 (5)0.143 (5)0.083 (3)0.002 (4)0.046 (3)0.024 (3)
C3'P0.136 (5)0.143 (5)0.083 (3)0.002 (4)0.046 (3)0.024 (3)
Geometric parameters (Å, °) top
O1—C21.448 (3)C11—H2C111.000
O1—H1011.000C11—H3C111.000
O2—C61.453 (3)C12—C131.512 (4)
O2—H1021.000C12—C13'1.516 (5)
C1—C21.535 (3)C12—H1C121.000
C1—C81.527 (3)C12—H2C121.000
C1—C91.527 (3)C12—H1'C121.000
C1—HC11.000C12—H2'C121.000
C2—C31.555 (3)C13—C141.531 (4)
C2—C101.528 (3)C13—H1C131.000
C3—C41.555 (3)C13—H2C131.000
C3—C121.532 (3)C13'—C141.525 (5)
C3—HC31.000C13'—H1C13'1.000
C4—C51.532 (3)C13'—H2C13'1.000
C4—H1C41.000C14—H1C141.000
C4—H2C41.000C14—H2C141.000
C5—C61.529 (3)O1P—C1P1.319 (3)
C5—C91.524 (3)O1P—H101P1.000
C5—HC51.000O2P—C1P1.199 (3)
C6—C71.556 (3)C1P—C2P1.506 (4)
C6—C111.528 (3)C2P—C3P1.507 (6)
C7—C81.547 (3)C2P—C3'P1.499 (8)
C7—C141.545 (4)C2P—H1C2P1.000
C7—HC71.000C2P—H2C2P1.000
C8—H1C81.000C2P—H1'C2P1.000
C8—H2C81.000C2P—H2'C2P1.000
C9—H1C91.000C3P—H1C3P1.000
C9—H2C91.000C3P—H2C3P1.000
C10—H1C101.000C3P—H3C3P1.000
C10—H2C101.000C3'P—H1C3P'1.000
C10—H3C101.000C3'P—H2C3P'1.000
C11—H1C111.000C3'P—H3C3P'1.000
C2—O1—H101115.1C6—C11—H1C11109.5
C6—O2—H102116.1C6—C11—H2C11109.5
C2—C1—C8117.3 (2)C6—C11—H3C11109.5
C2—C1—C9110.2 (2)H1C11—C11—H2C11109.5
C2—C1—HC1106.9H1C11—C11—H3C11109.5
C8—C1—C9108.1 (2)H2C11—C11—H3C11109.5
C8—C1—HC1106.9C3—C12—C13119.4 (2)
C9—C1—HC1106.9C3—C12—C13'119.4 (4)
O1—C2—C1105.7 (2)C3—C12—H1C12106.9
O1—C2—C3111.7 (2)C3—C12—H2C12106.9
O1—C2—C10106.9 (2)C3—C12—H1'C12106.9
C1—C2—C3113.8 (2)C3—C12—H2'C12106.9
C1—C2—C10109.8 (2)C13—C12—H1C12106.9
C3—C2—C10108.8 (2)C13—C12—H2C12106.9
C2—C3—C4111.7 (2)C13'—C12—H1'C12106.9
C2—C3—C12117.2 (2)C13'—C12—H2'C12106.9
C2—C3—HC3103.9H1C12—C12—H2C12109.5
C4—C3—C12114.2 (2)H1'C12—C12—H2'C12109.5
C4—C3—HC3103.9C12—C13—C14116.4 (3)
C12—C3—HC3103.9C12—C13—H1C13107.7
C3—C4—C5118.3 (2)C12—C13—H2C13107.7
C3—C4—H1C4107.2C14—C13—H1C13107.7
C3—C4—H2C4107.2C14—C13—H2C13107.7
C5—C4—H1C4107.2H1C13—C13—H2C13109.5
C5—C4—H2C4107.2C12—C13'—C14116.5 (4)
H1C4—C4—H2C4109.5C12—C13'—H1C13'107.7
C4—C5—C6118.4 (2)C12—C13'—H2C13'107.7
C4—C5—C9108.3 (2)C14—C13'—H1C13'107.7
C4—C5—HC5106.5C14—C13'—H2C13'107.7
C6—C5—C9110.0 (2)H1C13'—C13'—H2C13'109.5
C6—C5—HC5106.5C7—C14—C13121.3 (2)
C9—C5—HC5106.5C7—C14—C13'118.6 (4)
O2—C6—C5106.6 (2)C7—C14—H1C14106.4
O2—C6—C7111.3 (2)C7—C14—H2C14106.4
O2—C6—C11106.0 (2)C13—C14—H1C14106.4
C5—C6—C7113.3 (2)C13—C14—H2C14106.4
C5—C6—C11110.5 (2)H1C14—C14—H2C14109.5
C7—C6—C11109.0 (2)C1P—O1P—H101P116.7
C6—C7—C8111.5 (2)O1P—C1P—O2P122.8 (3)
C6—C7—C14116.5 (2)O1P—C1P—C2P113.2 (3)
C6—C7—HC7104.2O2P—C1P—C2P124.0 (3)
C8—C7—C14114.6 (2)C1P—C2P—C3P115.4 (3)
C8—C7—HC7104.2C1P—C2P—C3'P108.8 (5)
C14—C7—HC7104.2C1P—C2P—H1C2P108.0
C1—C8—C7118.9 (2)C1P—C2P—H2C2P108.0
C1—C8—H1C8107.1C1P—C2P—H1'C2P109.6
C1—C8—H2C8107.1C1P—C2P—H2'C2P109.6
C7—C8—H1C8107.1H1C2P—C2P—H2C2P109.5
C7—C8—H2C8107.1H1'C2P—C2P—H2'C2P109.5
H1C8—C8—H2C8109.5C2P—C3P—H1C3P109.5
C1—C9—C5108.2 (2)C2P—C3P—H2C3P109.5
C1—C9—H1C9109.8C2P—C3P—H3C3P109.5
C1—C9—H2C9109.8H1C3P—C3P—H2C3P109.5
C5—C9—H1C9109.8H1C3P—C3P—H3C3P109.5
C5—C9—H2C9109.8H2C3P—C3P—H3C3P109.5
H1C9—C9—H2C9109.5C2P—C3'P—H1C3P'109.5
C2—C10—H1C10109.5C2P—C3'P—H2C3P'109.5
C2—C10—H2C10109.5C2P—C3'P—H3C3P'109.5
C2—C10—H3C10109.5H1C3P'—C3'P—H2C3P'109.5
H1C10—C10—H2C10109.5H1C3P'—C3'P—H3C3P'109.5
H1C10—C10—H3C10109.5H2C3P'—C3'P—H3C3P'109.5
H2C10—C10—H3C10109.5
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
O1—H101···O2Pi1.001.822.822 (3)180
O2—H102···O1ii1.001.752.746 (3)180
O1P—H101P···O21.001.642.635 (3)180
Symmetry codes: (i) −x+2, y−1/2, −z+1/2; (ii) −x+1, y+1/2, −z+1/2.
Table 1
Hydrogen-bond geometry (Å, °)
top
D—H···AD—HH···AD···AD—H···A
O1—H101···O2Pi1.001.822.822 (3)180
O2—H102···O1ii1.001.752.746 (3)180
O1P—H101P···O21.001.642.635 (3)180
Symmetry codes: (i) −x+2, y−1/2, −z+1/2; (ii) −x+1, y+1/2, −z+1/2.
Acknowledgements top

This research was supported by the Australian Research Council.

references
References top

Alshahateet, S. F., Nakano, K., Bishop, R., Craig, D. C., Harris, K. D. M. & Scudder, M. L. (2004). CrystEngComm, 6, 5–10.

Altomare, A., Cascarano, G., Giacovazzo, C., Guagliardi, A., Burla, M. C., Polidori, G. & Camalli, M. (1994). J. Appl. Cryst. 27, 435.

Bishop, R. (2009). Acc. Chem. Res. 42, 67–78.

Dance, I. G., Bishop, R., Hawkins, S. C., Lipari, T., Scudder, M. L. & Craig, D. C. (1986). J. Chem. Soc. Perkin Trans. 2, pp. 1299–1307.

Enraf–Nonius (1989). CAD-4 Software. Enraf–Nonius, Delft, The Netherlands.

Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.

Palmer, D. (2005). CrystalMaker. CrystalMaker Software Ltd, Yarnton, Oxfordshire, England. htttp://www.CrystalMaker.co.uk.

Rae, A. D. (2000). RAELS. Australian National University, Canberra.

Yue, W., Nakano, K., Bishop, R., Craig, D. C., Harris, K. D. M. & Scudder, M. L. (2006). CrystEngComm, 8, 250–256.