supplementary materials


Acta Cryst. (2009). E65, i73    [ doi:10.1107/S1600536809038100 ]

Tripraseodymium pentairon(III) dodecaoxide, Pr3Fe5O12: a synchrotron radiation study

T. Komori, T. Sakakura, Y. Takenaka, K. Tanaka and T. Okuda

Abstract top

The title compound, pentairon tripraseodymium dodecaoxide (PrIG), has an iron garnet structure. There are two Fe site symmetries. One of the Fe atoms is coordinated by six O atoms, forming a slightly distorted octahedron, and has \overline{3} site symmetry. The other Fe atom is coordinated by four O atoms, forming a slightly distorted tetrahedron, and has \overline{4} site symmetry. FeO6 octahedra and FeO4 tetrahedra are linked together by corners. The Pr atom is coordinated by eight O atoms, forming a distorted dodecahedron, and has 222 site symmetry. The O atoms occupy the general positions.

Comment top

The title compound, Pr3Fe5O12 (PrIG), was difficult to be grown. It was grown by the low-temperature-liquid-phase epitaxy for the first time by Fratello et al. (1986). Though the crystal structure was assumed as iron-garnet-type structure by lattice constant and extinction rule, the complete structure was not determined. In this paper, we determine the O atom position and the complete structure by the full matrix least-squares program QNTAO. Since the R-factor is small and the residual density has no significant peaks where no atoms exists, the structure was finally determined to be iron-garnet structure. It is isotypic with the Ia3d form of Y3Fe5O12 (YIG). (Bonnet et al., 1975). The Pr atom is coordinated by eight oxygen atoms. It forms a distorted dodecahedron. There are two Fe site symmetries. One of the Fe atom is coordinated by six oxygen atoms. It forms a slitely distorted octahedron. The other Fe atom is coordinated by four oxygen atoms. It forms a slightly distorted tetrahedron. FeO6 octahedron and FeO4 tetrahedron are linked together by corners. The structure of PrIG is drawn in Fig.1. And displacement ellipsoids of PrO8 is drawn in Fig.2.

Related literature top

The title compound is isotypic with the Ia3d form of Y3Fe5O12 (YIG). For related structures, see : Bonnet et al. (1975). For details of the crystal growth from low-temperature liquid-phase epitaxy, see: Fratello et al. (1986).

For related literature, see: Becker & Coppens (1975); Takenaka et al. (2008).

Experimental top

Single crystals of praseodymium iron garnet were prepared by low temperature liquid phase epitaxy on Sm3(ScGa)5O12 seeds with lattice parameters near the projected values for PrIG.

Refinement top

X-ray intensities were measured avoiding multiple diffraction. (Takenaka et al., 2008).

Computing details top

Data collection: AFC-5, specially designed for PF-BL14A (Rigaku, 1984) and IUANGLE (Tanaka et al., 1994).; cell refinement: RSLC-3 UNICS system (Sakurai & Kobayashi, 1979); data reduction: RDEDIT (Tanaka, 2008); program(s) used to solve structure: QNTAO (Tanaka et al., 2008); program(s) used to refine structure: QNTAO (Tanaka et al., 2008); molecular graphics: ATOMS for Windows (Dowty, 2000); software used to prepare material for publication: RDEDIT (Tanaka, 2008).

Figures top
[Figure 1] Fig. 1. The structure of Pr3Fe5O12. Small red and large green spheres represent O and Pr atoms, respectively. Purple octahedron and blue tetrahedron represent FeO6 and FeO4 units, respectively.
[Figure 2] Fig. 2. View of PrO8 with displacement ellipsoids at the 90% probability level. Green and red ellipsoids represent Pr and O atoms, in Fig.1.
Pentairon tripraseodymium dodecaoxide top
Crystal data top
Pr3Fe5O12Dx = 5.894 Mg m3
Mr = 893.98Synchrotron radiation, λ = 0.67171 Å
Cubic, Ia3dCell parameters from 9 reflections
Hall symbol: -I 4bd 2c 3θ = 17.5–52.3°
a = 12.6302 (3) ŵ = 17.41 mm1
V = 2014.79 (8) Å3T = 298 K
Z = 8Sphere, black
F(000) = 32240.04 mm (radius)
Data collection top
Rigaku AFC four-circle
diffractometer
1728 independent reflections
Si 1111728 reflections with F > 3σ(F)
Detector resolution: 1.25 × 1.25° pixels mm-1Rint = 0.016
ω/2θ scansθmax = 68.3°, θmin = 3.7°
Absorption correction: for a sphere
[Transmission coefficients for spheres tabulated in International Tables C (1992), Table 6.3.3.3, were interpolated with Lagrange's method (four-point interpolation (Yamauchi et al., 1965)]
h = 934
Tmin = 0.413, Tmax = 0.441k = 932
9351 measured reflectionsl = 934
Refinement top
Refinement on FPrimary atom site location: isomorphous structure methods
Least-squares matrix: fullWeighting scheme based on measured s.u.'s
R[F2 > 2σ(F2)] = 0.019(Δ/σ)max = 0.003
wR(F2) = 0.021Δρmax = 2.52 e Å3
S = 1.06Δρmin = 3.16 e Å3
9351 reflectionsExtinction correction: B–C type 1 Gaussian isotropic (Becker & Coppens, 1975)
17 parametersExtinction coefficient: 0.255 (5)
Crystal data top
Pr3Fe5O12Z = 8
Mr = 893.98Synchrotron radiation, λ = 0.67171 Å
Cubic, Ia3dµ = 17.41 mm1
a = 12.6302 (3) ÅT = 298 K
V = 2014.79 (8) Å30.04 mm (radius)
Data collection top
Rigaku AFC four-circle
diffractometer
1728 independent reflections
Absorption correction: for a sphere
[Transmission coefficients for spheres tabulated in International Tables C (1992), Table 6.3.3.3, were interpolated with Lagrange's method (four-point interpolation (Yamauchi et al., 1965)]
1728 reflections with F > 3σ(F)
Tmin = 0.413, Tmax = 0.441Rint = 0.016
9351 measured reflectionsθmax = 68.3°
Refinement top
R[F2 > 2σ(F2)] = 0.019Δρmax = 2.52 e Å3
wR(F2) = 0.021Δρmin = 3.16 e Å3
S = 1.06Absolute structure: ?
9351 reflectionsFlack parameter: ?
17 parametersRogers parameter: ?
? restraints
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Pr10.1250000.0000000.2500000.00531 (1)
Fe10.0000000.0000000.0000000.00512 (1)
Fe20.3750000.0000000.2500000.00533 (1)
O10.029622 (2)0.052553 (2)0.149166 (2)0.00711 (5)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Pr10.00406 (2)0.00594 (2)0.00594 (2)000.00111 (1)
Fe10.00512 (2)0.00512 (2)0.00512 (2)0.00023 (1)0.00023 (1)0.00023 (1)
Fe20.00411 (3)0.00594 (2)0.00594 (2)000
O10.00718 (8)0.00829 (8)0.00587 (7)0.00004 (6)0.00080 (6)0.00038 (6)
Geometric parameters (Å, °) top
Pr1—O12.42410 (10)Fe1—O1i2.03220 (10)
Pr1—O1i2.54010 (10)Fe1—O1viii2.03220 (10)
Pr1—O1ii2.42410 (10)Fe1—O1ix2.03220 (10)
Pr1—O1iii2.54010 (10)Fe1—O1x2.03220 (10)
Pr1—O1iv2.42410 (10)Fe1—O1xi2.03220 (10)
Pr1—O1v2.54010 (10)Fe2—O1xii1.87450 (10)
Pr1—O1vi2.42410 (10)Fe2—O1iv1.87450 (10)
Pr1—O1vii2.54010 (10)Fe2—O1xiii1.87450 (10)
Fe1—O12.03220 (10)Fe2—O1vi1.87450 (10)
O1—Pr1—O1i67.75 (1)O1—Fe1—O1viii85.87 (1)
O1—Pr1—O1ii72.66 (1)O1—Fe1—O1ix180.00
O1—Pr1—O1iii124.91 (1)O1—Fe1—O1x94.13 (1)
O1—Pr1—O1iv111.18 (1)O1—Fe1—O1xi94.13 (1)
O1—Pr1—O1v73.25 (1)O1xii—Fe2—O1vi114.39 (1)
O1—Pr1—O1vi159.51 (1)O1xii—Fe2—O1iv114.39 (1)
O1—Pr1—O1vii95.43 (1)O1xii—Fe2—O1xiii100.02 (1)
O1—Fe1—O1i85.87 (1)
Symmetry codes: (i) z, x, y; (ii) x, −y, −z+1/2; (iii) z, −x, −y+1/2; (iv) −x+1/4, −z+1/4, −y+1/4; (v) −z+1/4, −y+1/4, −x+1/4; (vi) −x+1/4, z−1/4, y+1/4; (vii) −z+1/4, y−1/4, x+1/4; (viii) y, z, x; (ix) −x, −y, −z; (x) −z, −x, −y; (xi) −y, −z, −x; (xii) x+1/2, y, −z+1/2; (xiii) x+1/2, −y, z.
Table 1
Selected geometric parameters (Å, °)
top
Pr1—O12.42410 (10)Fe1—O12.03220 (10)
Pr1—O1i2.54010 (10)Fe2—O1ii1.87450 (10)
O1—Fe1—O1i85.87 (1)O1ii—Fe2—O1iv100.02 (1)
O1ii—Fe2—O1iii114.39 (1)
Symmetry codes: (i) z, x, y; (ii) x+1/2, y, −z+1/2; (iii) −x+1/4, z−1/4, y+1/4; (iv) x+1/2, −y, z.
Acknowledgements top

The authors thank Dr V. J. Fratello for supplying the crystals.

references
References top

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Sakurai, T. & Kobayashi, K. (1979). Rep. Inst. Phys. Chem. Res. 55, 69-77.

Takenaka, Y., Sakakura, T., Tanaka, K. & Kishimoto, S. (2008). Acta Cryst. A64, C566.

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Tanaka, K., Makita, R., Funahashi, S., Komori, T. & Win, Z. (2008). Acta Cryst. A64, 437-449.

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