supplementary materials


Acta Cryst. (2009). E65, o2603    [ doi:10.1107/S1600536809039002 ]

2-[3-Cyano-4-(2-methylpropoxy)phenyl]-4-methylthiazole-5-carboxylic acid pyridine solvate

X. Zhu, Y. Wang and T. Lu

Abstract top

In the title compound, C16H16N2O3S·C5H5N, the benzene and thiazole rings of the Febuxostat [2-(3-cyano-4-isobutyloxy)phenyl-4-methyl-5-thiazolecarboxylic acid] molecule are almost coplanar [dihedral angle = 2.4 (1)°]. The carboxyl group is coplanar with the thiazole ring [O-C-C-C and O-C-C-S torsion angles of -0.7 (4) and 0.6 (3)°, respectively]. The pyridine molecule of crystallization is linked to the Febuxostat molecule through an O-H...N hydrogen bond. A weak [pi]-[pi] stacking interaction is observed between the benzene ring of the Febuxostat molecule and pyridine molecule, with a centroid-centroid distance of 3.7530 (18) Å.

Comment top

The oxidation of xanthine results in the formation of uric acid. Disorders of uric acid metabolism include gout which is the most common inflammatory arthritis initiated by tissue deposition of monosodium urate (MSU) crystals (Alexander, 2008). Some inventions are related to methods of preserving or increasing renal function in a subject by administering a therapeutically effective amount of at least one xanthine oxidoreductase inhibiting compound. 2-(3-Cyano-4-isobutyloxy)phenyl-4-methyl-5-thiazolecarboxylic acid (Febuxostat) is one of the novel drug that have been evaluated and shown to be highly effective in the management of hyperuricemia (Perez-Ruiz et al., 2008; Edwards, 2009), thus enlarging the therapeutic options available to lower uric acid levels. Many patents or papers have been reported on the synthesis, polymorphism and their effect on the stability and bioavailability of this drug (Hiramatsu et al., 2000; Sorbera et al., 2001; Zhou et al., 2007). However, there are few reports on its single-crystal structure. In the present study, we report the crystal structure of the title compound.

The asymmetric unit of the title compound contains one febuxostat molecule and one pyridine molecule. The phenyl ring and thiazole rings of the febuxostat molecule are almost coplanar (Fig. 1), with the dihedral angle between them being 2.4 (1)°. The carboxyl group is coplanar with the thiazole ring as indicated by torsion angles O1—C1—C2—C4 and O2—C1—C2—S of -0.7 (4)° and 0.6 (3)°, respectively. Bond lengths and angles are comparable to those observed in a related structure (Fontrodona et al., 2001).

In the crystal, pyridine moleclue is linked to the febuxostat molecule through a O2—H2A···N3(x, y, 1 + z) hydrogen bond (Table 1). A weak π-π stacking interaction is observed between the benzene ring and pyridine molecule, with a centroid-to-centroid distance of 3.7530 (18) Å.

Related literature top

For general background to gout, see: Alexander (2008). For the synthesis, polymorphism, stability and biological activity of Febuxostat, see: Edwards (2009); Hiramatsu et al. (2000); Perez-Ruiz et al. (2008); Sorbera et al. (2001); Zhou et al. (2007). For a related structure, see: Fontrodona et al. (2001).

Experimental top

2-(3-Formyl-4-isobutoxyphenyl)-4-methylthiazole-5-carboxylic acid ethyl ester (42.6 g, 0.123 mol) was treated with formic acid (384 ml), sodium formate (15.3 g, 0.147 mol) and hydroxylamine hydrochloride (10.2 g, 0.147 mol) to give 21.4 g of 2-(3-cyano-4-isobutoxyphenyl)-4-methylthiazole-5-carboxylic acid ethyl ester (yield 50.5%). Then it was hydrolyzed with NaOH in tetrahydrofuran and ethanol. Finally, brown block crystals of the title compound appropriate for X-ray data collection were obtained by slow evaporation of a pyridine solution at room temperature (yield 70%).

Refinement top

All H atoms were initially located from a difference Fourier map and then were regenerated at ideal positions and treated as riding, with O-H = 0.82 Å, C-H = 0.93-0.98 Å and Uiso(H) = 1.2-1.5Ueq(C,O).

Computing details top

Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994); cell refinement: CAD-4 EXPRESS (Enraf–Nonius, 1994); data reduction: XCAD4 (Harms & Wocadlo,1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids.
2-[3-Cyano-4-(2-methylpropoxy)phenyl]-4-methylthiazole-5-carboxylic acid pyridine solvate top
Crystal data top
C16H16N2O3S·C5H5NZ = 2
Mr = 395.47F(000) = 416
Triclinic, P1Dx = 1.270 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6040 (17) ÅCell parameters from 25 reflections
b = 10.339 (2) Åθ = 10–13°
c = 12.611 (3) ŵ = 0.18 mm1
α = 82.51 (3)°T = 296 K
β = 80.69 (3)°Block, brown
γ = 69.61 (3)°0.30 × 0.20 × 0.20 mm
V = 1034.4 (4) Å3
Data collection top
Enraf–Nonius CAD-4
diffractometer
2815 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.032
graphiteθmax = 25.3°, θmin = 1.6°
ω/2θ scansh = 010
Absorption correction: ψ scan
(North et al., 1968)
k = 1112
Tmin = 0.947, Tmax = 0.964l = 1415
4017 measured reflections3 standard reflections every 200 reflections
3747 independent reflections intensity decay: 1%
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.156 w = 1/[σ2(Fo2) + (0.1P)2 + 0.12P]
where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
3747 reflectionsΔρmax = 0.33 e Å3
255 parametersΔρmin = 0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.030 (5)
Crystal data top
C16H16N2O3S·C5H5Nγ = 69.61 (3)°
Mr = 395.47V = 1034.4 (4) Å3
Triclinic, P1Z = 2
a = 8.6040 (17) ÅMo Kα radiation
b = 10.339 (2) ŵ = 0.18 mm1
c = 12.611 (3) ÅT = 296 K
α = 82.51 (3)°0.30 × 0.20 × 0.20 mm
β = 80.69 (3)°
Data collection top
Enraf–Nonius CAD-4
diffractometer
2815 reflections with I > 2σ(I)
Absorption correction: ψ scan
(North et al., 1968)
Rint = 0.032
Tmin = 0.947, Tmax = 0.964θmax = 25.3°
4017 measured reflections3 standard reflections every 200 reflections
3747 independent reflections intensity decay: 1%
Refinement top
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.156Δρmax = 0.33 e Å3
S = 0.99Δρmin = 0.19 e Å3
3747 reflectionsAbsolute structure: ?
255 parametersFlack parameter: ?
0 restraintsRogers parameter: ?
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S0.83182 (8)0.26459 (7)0.30078 (4)0.0564 (2)
O10.5471 (2)0.2112 (2)0.10983 (14)0.0754 (6)
O20.7344 (2)0.3198 (2)0.08925 (14)0.0754 (6)
H2A0.70910.33810.02770.113*
O31.1361 (2)0.20514 (18)0.76698 (12)0.0586 (5)
N10.6870 (3)0.1219 (2)0.43509 (15)0.0586 (5)
N21.2786 (4)0.4042 (4)0.5613 (2)0.1041 (10)
C10.6483 (3)0.2464 (3)0.14487 (19)0.0570 (6)
C20.6882 (3)0.2095 (3)0.25744 (18)0.0523 (6)
C30.7976 (3)0.1847 (2)0.42631 (17)0.0510 (6)
C40.6240 (3)0.1354 (3)0.33987 (18)0.0562 (6)
C50.4943 (4)0.0713 (3)0.3353 (2)0.0790 (9)
H5A0.41670.12820.28740.118*
H5B0.43570.06360.40620.118*
H5C0.54720.01910.30960.118*
C60.8868 (3)0.1864 (2)0.51606 (17)0.0509 (6)
C70.9984 (3)0.2585 (3)0.50346 (18)0.0554 (6)
H7A1.01830.30540.43740.067*
C81.0807 (3)0.2614 (2)0.58894 (17)0.0529 (6)
C91.0521 (3)0.1928 (2)0.68921 (17)0.0494 (5)
C100.9425 (3)0.1192 (2)0.70122 (17)0.0539 (6)
H10A0.92300.07140.76690.065*
C110.8622 (3)0.1166 (3)0.61544 (18)0.0555 (6)
H11A0.78920.06640.62470.067*
C121.1917 (4)0.3398 (3)0.57499 (19)0.0705 (8)
C131.1139 (3)0.1363 (3)0.87244 (17)0.0532 (6)
H13A1.14890.03710.86770.064*
H13B0.99710.16840.90250.064*
C141.2185 (3)0.1690 (3)0.94322 (18)0.0555 (6)
H14A1.33410.14320.90810.067*
C151.1568 (4)0.3222 (3)0.9600 (2)0.0716 (7)
H15A1.16030.37440.89140.107*
H15B1.22700.34041.00390.107*
H15C1.04400.34870.99520.107*
C161.2148 (4)0.0832 (4)1.0511 (2)0.0829 (9)
H16A1.25550.01341.03890.124*
H16B1.10210.10771.08650.124*
H16C1.28440.10121.09560.124*
N30.6706 (3)0.3879 (3)0.89010 (17)0.0662 (6)
C170.5872 (4)0.4524 (3)0.6832 (2)0.0784 (9)
H17A0.55890.47420.61340.094*
C180.6965 (4)0.5024 (3)0.7160 (2)0.0755 (8)
H18A0.74440.55890.66870.091*
C190.7359 (4)0.4686 (3)0.8200 (2)0.0702 (7)
H19A0.81060.50350.84180.084*
C200.5646 (3)0.3398 (3)0.8567 (2)0.0743 (8)
H20A0.51820.28300.90480.089*
C210.5200 (4)0.3700 (4)0.7544 (2)0.0816 (9)
H21A0.44470.33450.73410.098*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S0.0649 (4)0.0694 (4)0.0399 (3)0.0261 (3)0.0190 (3)0.0038 (3)
O10.0859 (13)0.1005 (15)0.0542 (11)0.0423 (11)0.0318 (9)0.0028 (10)
O20.0786 (12)0.1131 (16)0.0442 (9)0.0428 (12)0.0256 (9)0.0128 (10)
O30.0751 (11)0.0709 (11)0.0383 (8)0.0323 (9)0.0229 (7)0.0072 (7)
N10.0607 (12)0.0784 (14)0.0422 (10)0.0284 (11)0.0138 (9)0.0006 (9)
N20.148 (3)0.140 (3)0.0683 (16)0.102 (2)0.0507 (17)0.0359 (16)
C10.0562 (14)0.0680 (16)0.0436 (12)0.0115 (12)0.0179 (11)0.0042 (11)
C20.0498 (13)0.0645 (15)0.0428 (12)0.0140 (11)0.0157 (10)0.0078 (10)
C30.0547 (13)0.0588 (14)0.0387 (12)0.0158 (11)0.0124 (10)0.0011 (10)
C40.0553 (14)0.0725 (16)0.0445 (12)0.0224 (12)0.0131 (10)0.0058 (11)
C50.0804 (19)0.113 (2)0.0605 (16)0.0508 (18)0.0194 (14)0.0009 (16)
C60.0562 (13)0.0583 (14)0.0383 (11)0.0164 (11)0.0130 (10)0.0027 (10)
C70.0665 (15)0.0631 (15)0.0382 (11)0.0226 (12)0.0155 (10)0.0049 (10)
C80.0653 (15)0.0591 (14)0.0391 (12)0.0249 (12)0.0163 (10)0.0034 (10)
C90.0599 (13)0.0503 (13)0.0378 (11)0.0152 (11)0.0148 (10)0.0015 (9)
C100.0697 (15)0.0583 (14)0.0362 (11)0.0240 (12)0.0147 (10)0.0053 (10)
C110.0658 (15)0.0625 (15)0.0448 (12)0.0273 (12)0.0150 (10)0.0011 (10)
C120.095 (2)0.089 (2)0.0439 (13)0.0501 (17)0.0309 (13)0.0172 (13)
C130.0673 (15)0.0578 (14)0.0367 (11)0.0214 (12)0.0164 (10)0.0025 (10)
C140.0565 (14)0.0710 (16)0.0400 (12)0.0198 (12)0.0142 (10)0.0021 (11)
C150.0767 (18)0.084 (2)0.0662 (16)0.0361 (15)0.0154 (14)0.0125 (14)
C160.104 (2)0.103 (2)0.0470 (14)0.0364 (19)0.0328 (15)0.0091 (14)
N30.0607 (13)0.0864 (16)0.0445 (11)0.0141 (12)0.0165 (10)0.0022 (10)
C170.0798 (19)0.094 (2)0.0447 (14)0.0046 (17)0.0231 (13)0.0020 (14)
C180.085 (2)0.0775 (19)0.0538 (15)0.0176 (16)0.0115 (14)0.0084 (13)
C190.0737 (17)0.0765 (18)0.0588 (16)0.0207 (15)0.0166 (13)0.0022 (13)
C200.0643 (17)0.104 (2)0.0547 (15)0.0288 (16)0.0183 (13)0.0081 (14)
C210.0717 (18)0.118 (3)0.0588 (16)0.0306 (17)0.0282 (14)0.0032 (16)
Geometric parameters (Å, °) top
S—C21.714 (2)C10—H10A0.93
S—C31.718 (2)C11—H11A0.93
O1—C11.214 (3)C13—C141.508 (3)
O2—C11.304 (3)C13—H13A0.97
O2—H2A0.82C13—H13B0.97
O3—C91.352 (3)C14—C151.516 (4)
O3—C131.442 (3)C14—C161.526 (4)
N1—C31.310 (3)C14—H14A0.98
N1—C41.367 (3)C15—H15A0.96
N2—C121.143 (4)C15—H15B0.96
C1—C21.485 (3)C15—H15C0.96
C2—C41.369 (4)C16—H16A0.96
C3—C61.472 (3)C16—H16B0.96
C4—C51.494 (3)C16—H16C0.96
C5—H5A0.96N3—C201.323 (4)
C5—H5B0.96N3—C191.330 (4)
C5—H5C0.96C17—C181.357 (4)
C6—C111.386 (3)C17—C211.357 (5)
C6—C71.386 (3)C17—H17A0.93
C7—C81.391 (3)C18—C191.377 (4)
C7—H7A0.93C18—H18A0.93
C8—C91.396 (3)C19—H19A0.93
C8—C121.432 (4)C20—C211.371 (4)
C9—C101.384 (3)C20—H20A0.93
C10—C111.382 (3)C21—H21A0.93
C2—S—C389.34 (11)O3—C13—C14107.94 (19)
C1—O2—H2A109.5O3—C13—H13A110.1
C9—O3—C13118.94 (18)C14—C13—H13A110.1
C3—N1—C4111.2 (2)O3—C13—H13B110.1
O1—C1—O2124.6 (2)C14—C13—H13B110.1
O1—C1—C2123.2 (3)H13A—C13—H13B108.4
O2—C1—C2112.2 (2)C13—C14—C15111.3 (2)
C4—C2—C1129.7 (2)C13—C14—C16109.1 (2)
C4—C2—S110.16 (17)C15—C14—C16110.7 (2)
C1—C2—S120.2 (2)C13—C14—H14A108.6
N1—C3—C6123.1 (2)C15—C14—H14A108.6
N1—C3—S114.60 (16)C16—C14—H14A108.6
C6—C3—S122.33 (18)C14—C15—H15A109.5
N1—C4—C2114.7 (2)C14—C15—H15B109.5
N1—C4—C5118.6 (2)H15A—C15—H15B109.5
C2—C4—C5126.7 (2)C14—C15—H15C109.5
C4—C5—H5A109.5H15A—C15—H15C109.5
C4—C5—H5B109.5H15B—C15—H15C109.5
H5A—C5—H5B109.5C14—C16—H16A109.5
C4—C5—H5C109.5C14—C16—H16B109.5
H5A—C5—H5C109.5H16A—C16—H16B109.5
H5B—C5—H5C109.5C14—C16—H16C109.5
C11—C6—C7117.9 (2)H16A—C16—H16C109.5
C11—C6—C3121.4 (2)H16B—C16—H16C109.5
C7—C6—C3120.7 (2)C20—N3—C19117.5 (2)
C6—C7—C8120.5 (2)C18—C17—C21118.6 (3)
C6—C7—H7A119.8C18—C17—H17A120.7
C8—C7—H7A119.8C21—C17—H17A120.7
C7—C8—C9120.9 (2)C17—C18—C19119.4 (3)
C7—C8—C12119.5 (2)C17—C18—H18A120.3
C9—C8—C12119.6 (2)C19—C18—H18A120.3
O3—C9—C10125.7 (2)N3—C19—C18122.2 (3)
O3—C9—C8115.8 (2)N3—C19—H19A118.9
C10—C9—C8118.6 (2)C18—C19—H19A118.9
C11—C10—C9119.9 (2)N3—C20—C21123.0 (3)
C11—C10—H10A120.0N3—C20—H20A118.5
C9—C10—H10A120.0C21—C20—H20A118.5
C10—C11—C6122.2 (2)C17—C21—C20119.2 (3)
C10—C11—H11A118.9C17—C21—H21A120.4
C6—C11—H11A118.9C20—C21—H21A120.4
N2—C12—C8178.1 (3)
O1—C1—C2—C40.7 (4)C6—C7—C8—C90.4 (4)
O2—C1—C2—C4179.4 (2)C6—C7—C8—C12178.2 (2)
O1—C1—C2—S179.5 (2)C13—O3—C9—C100.5 (3)
O2—C1—C2—S0.6 (3)C13—O3—C9—C8179.5 (2)
C3—S—C2—C40.17 (19)C7—C8—C9—O3178.6 (2)
C3—S—C2—C1179.2 (2)C12—C8—C9—O30.8 (4)
C4—N1—C3—C6179.6 (2)C7—C8—C9—C101.4 (4)
C4—N1—C3—S0.1 (3)C12—C8—C9—C10179.1 (2)
C2—S—C3—N10.1 (2)O3—C9—C10—C11178.9 (2)
C2—S—C3—C6179.5 (2)C8—C9—C10—C111.0 (3)
C3—N1—C4—C20.1 (3)C9—C10—C11—C60.2 (4)
C3—N1—C4—C5179.3 (2)C7—C6—C11—C101.1 (4)
C1—C2—C4—N1179.0 (2)C3—C6—C11—C10178.8 (2)
S—C2—C4—N10.2 (3)C9—O3—C13—C14179.00 (19)
C1—C2—C4—C50.3 (4)O3—C13—C14—C1564.7 (3)
S—C2—C4—C5179.2 (2)O3—C13—C14—C16173.0 (2)
N1—C3—C6—C112.2 (4)C21—C17—C18—C190.1 (5)
S—C3—C6—C11177.39 (18)C20—N3—C19—C180.0 (4)
N1—C3—C6—C7177.7 (2)C17—C18—C19—N30.2 (4)
S—C3—C6—C72.7 (3)C19—N3—C20—C210.2 (4)
C11—C6—C7—C80.8 (4)C18—C17—C21—C200.1 (5)
C3—C6—C7—C8179.1 (2)N3—C20—C21—C170.2 (5)
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
O2—H2A···N3i0.821.792.611 (3)174
C5—H5A···O10.962.523.055 (3)115
Symmetry codes: (i) x, y, z−1.
Table 1
Hydrogen-bond geometry (Å, °)
top
D—H···AD—HH···AD···AD—H···A
O2—H2A···N3i0.821.792.611 (3)174
Symmetry codes: (i) x, y, z−1.
references
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