supplementary materials

3-(6-Bromohexyl)-1,5-dimethyl-1H-1,5-benzodiazepine-2,4(3H,5H)-dione
The seven-membered ring in the title compound, C17H23BrN2O2, adopts a boat-shaped conformation (with the C atoms of the fused-ring as the stern and the methine C atom as the prow). The bromohexyl substituent occupies an equatorial position, with the hexyl chain exhibiting an extended conformation. Weak intermolecular C-H
O hydrogen bonding is present in the crystal structure.
To a solution of the potassium t-butoxide (0.42 g, 3.6 mmol) in DMF (15 ml) was added 1,5-dimethyl-1,5-benzodiazepine-2,4-dione (0.50 g, 2.4 mmol) and
1,6-dibromodohexane (0.40 ml, 2.88 mmol). Stirring was continued for 24 h. The
reaction was monitored by thin layer chromatography. The mixture was filtered
and the solution evaporated to give colorless crystals.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.93–0.97 Å)
and were included in the refinement in the riding model approximation, with
U(H) set to 1.2–1.5Ueq(C).
Data collection: APEX2 (Bruker, 2008); cell refinement: SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
3-(6-Bromohexyl)-1,5-dimethyl-1
H-1,5-benzodiazepine-
2,4(3
H,5
H)-dione
top
Crystal data top
| C17H23BrN2O2 | F(000) = 760 |
| Mr = 367.28 | Dx = 1.451 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 5411 reflections |
| a = 7.5214 (1) Å | θ = 2.3–26.0° |
| b = 9.3693 (2) Å | µ = 2.45 mm−1 |
| c = 23.8686 (5) Å | T = 293 K |
| β = 91.750 (1)° | Prism, colorless |
| V = 1681.24 (6) Å3 | 0.30 × 0.20 × 0.10 mm |
| Z = 4 | |
Data collection top
Bruker X8 APEXII diffractometer | 4897 independent reflections |
| Radiation source: fine-focus sealed tube | 3478 reflections with I > 2σ(I) |
| graphite | Rint = 0.045 |
| φ and ω scans | θmax = 30.0°, θmin = 2.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −10→9 |
| Tmin = 0.526, Tmax = 0.791 | k = −13→13 |
| 25590 measured reflections | l = −28→33 |
Refinement top
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.153 | H-atom parameters constrained |
| S = 1.01 | w = 1/[σ2(Fo2) + (0.082P)2 + 1.8005P] where P = (Fo2 + 2Fc2)/3 |
| 4897 reflections | (Δ/σ)max = 0.001 |
| 201 parameters | Δρmax = 1.92 e Å−3 |
| 0 restraints | Δρmin = −0.68 e Å−3 |
Crystal data top
| C17H23BrN2O2 | V = 1681.24 (6) Å3 |
| Mr = 367.28 | Z = 4 |
| Monoclinic, P21/n | Mo Kα radiation |
| a = 7.5214 (1) Å | µ = 2.45 mm−1 |
| b = 9.3693 (2) Å | T = 293 K |
| c = 23.8686 (5) Å | 0.30 × 0.20 × 0.10 mm |
| β = 91.750 (1)° | |
Data collection top
Bruker X8 APEXII diffractometer | 3478 reflections with I > 2σ(I) |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | Rint = 0.045 |
| Tmin = 0.526, Tmax = 0.791 | θmax = 30.0° |
| 25590 measured reflections | Standard reflections: 0 |
| 4897 independent reflections | |
Refinement top
| R[F2 > 2σ(F2)] = 0.051 | H-atom parameters constrained |
| wR(F2) = 0.153 | Δρmax = 1.92 e Å−3 |
| S = 1.01 | Δρmin = −0.68 e Å−3 |
| 4897 reflections | Absolute structure: ? |
| 201 parameters | Flack parameter: ? |
| 0 restraints | Rogers parameter: ? |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top| | x | y | z | Uiso*/Ueq | |
| Br1 | 1.30982 (5) | 0.07856 (4) | 0.564211 (15) | 0.04567 (14) | |
| O1 | 0.5859 (3) | 0.4826 (2) | 0.28329 (9) | 0.0297 (4) | |
| O2 | 0.1496 (3) | 0.4797 (2) | 0.35848 (10) | 0.0351 (5) | |
| N1 | 0.5074 (3) | 0.7166 (2) | 0.27741 (9) | 0.0211 (4) | |
| N2 | 0.1710 (3) | 0.7124 (2) | 0.33415 (9) | 0.0231 (4) | |
| C1 | 0.4344 (3) | 0.8410 (3) | 0.30158 (10) | 0.0199 (5) | |
| C2 | 0.5247 (4) | 0.9710 (3) | 0.29605 (11) | 0.0247 (5) | |
| H2 | 0.6331 | 0.9729 | 0.2783 | 0.030* | |
| C3 | 0.4550 (4) | 1.0961 (3) | 0.31659 (12) | 0.0278 (6) | |
| H3 | 0.5153 | 1.1818 | 0.3119 | 0.033* | |
| C4 | 0.2944 (4) | 1.0944 (3) | 0.34434 (12) | 0.0266 (5) | |
| H4 | 0.2476 | 1.1784 | 0.3585 | 0.032* | |
| C5 | 0.2056 (4) | 0.9665 (3) | 0.35053 (11) | 0.0251 (5) | |
| H5 | 0.0991 | 0.9651 | 0.3693 | 0.030* | |
| C6 | 0.2725 (3) | 0.8394 (3) | 0.32918 (10) | 0.0203 (5) | |
| C7 | 0.5848 (3) | 0.7301 (3) | 0.22189 (11) | 0.0244 (5) | |
| H7A | 0.5875 | 0.6381 | 0.2042 | 0.037* | |
| H7B | 0.7036 | 0.7667 | 0.2259 | 0.037* | |
| H7C | 0.5137 | 0.7942 | 0.1992 | 0.037* | |
| C8 | 0.5209 (3) | 0.5879 (3) | 0.30474 (11) | 0.0215 (5) | |
| C9 | 0.4425 (4) | 0.5856 (3) | 0.36297 (11) | 0.0233 (5) | |
| H9 | 0.4770 | 0.6735 | 0.3827 | 0.028* | |
| C10 | 0.2407 (4) | 0.5863 (3) | 0.35245 (11) | 0.0237 (5) | |
| C11 | −0.0223 (3) | 0.7209 (3) | 0.32308 (12) | 0.0281 (6) | |
| H11A | −0.0647 | 0.6313 | 0.3084 | 0.042* | |
| H11B | −0.0476 | 0.7951 | 0.2962 | 0.042* | |
| H11C | −0.0807 | 0.7419 | 0.3573 | 0.042* | |
| C12 | 0.5012 (4) | 0.4579 (3) | 0.39872 (12) | 0.0291 (6) | |
| H12A | 0.4395 | 0.4608 | 0.4338 | 0.035* | |
| H12B | 0.4662 | 0.3709 | 0.3794 | 0.035* | |
| C13 | 0.6995 (4) | 0.4532 (3) | 0.41145 (14) | 0.0363 (7) | |
| H13A | 0.7388 | 0.5469 | 0.4239 | 0.044* | |
| H13B | 0.7603 | 0.4312 | 0.3772 | 0.044* | |
| C14 | 0.7533 (4) | 0.3430 (3) | 0.45629 (14) | 0.0372 (7) | |
| H14A | 0.7202 | 0.3782 | 0.4927 | 0.045* | |
| H14B | 0.6884 | 0.2551 | 0.4491 | 0.045* | |
| C15 | 0.9504 (5) | 0.3118 (4) | 0.45750 (15) | 0.0462 (8) | |
| H15A | 1.0143 | 0.4018 | 0.4588 | 0.055* | |
| H15B | 0.9794 | 0.2646 | 0.4228 | 0.055* | |
| C16 | 1.0164 (4) | 0.2199 (3) | 0.50614 (13) | 0.0360 (7) | |
| H16A | 1.0014 | 0.2709 | 0.5411 | 0.043* | |
| H16B | 0.9465 | 0.1331 | 0.5074 | 0.043* | |
| C17 | 1.2095 (5) | 0.1827 (5) | 0.50011 (14) | 0.0469 (8) | |
| H17A | 1.2768 | 0.2699 | 0.4953 | 0.056* | |
| H17B | 1.2219 | 0.1253 | 0.4666 | 0.056* | |
Atomic displacement parameters (Å2) top| | U11 | U22 | U33 | U12 | U13 | U23 |
| Br1 | 0.0511 (2) | 0.0394 (2) | 0.0454 (2) | 0.00836 (15) | −0.01604 (15) | −0.00333 (14) |
| O1 | 0.0329 (10) | 0.0220 (9) | 0.0342 (10) | 0.0060 (8) | 0.0014 (8) | −0.0021 (8) |
| O2 | 0.0311 (11) | 0.0260 (10) | 0.0482 (13) | −0.0106 (8) | 0.0014 (9) | 0.0044 (9) |
| N1 | 0.0222 (10) | 0.0170 (9) | 0.0243 (10) | 0.0011 (8) | 0.0034 (8) | −0.0001 (8) |
| N2 | 0.0189 (10) | 0.0223 (10) | 0.0283 (11) | −0.0039 (8) | 0.0017 (8) | 0.0011 (8) |
| C1 | 0.0204 (11) | 0.0177 (11) | 0.0215 (11) | 0.0023 (9) | −0.0003 (9) | 0.0006 (9) |
| C2 | 0.0231 (12) | 0.0213 (11) | 0.0299 (13) | −0.0023 (10) | 0.0051 (10) | 0.0017 (10) |
| C3 | 0.0310 (14) | 0.0196 (12) | 0.0329 (14) | −0.0041 (10) | 0.0022 (11) | 0.0000 (10) |
| C4 | 0.0279 (13) | 0.0209 (12) | 0.0309 (13) | 0.0027 (10) | −0.0004 (10) | −0.0027 (10) |
| C5 | 0.0220 (12) | 0.0259 (12) | 0.0276 (13) | 0.0017 (10) | 0.0024 (10) | −0.0006 (10) |
| C6 | 0.0187 (11) | 0.0195 (11) | 0.0227 (11) | −0.0019 (9) | −0.0011 (9) | 0.0008 (9) |
| C7 | 0.0242 (12) | 0.0257 (12) | 0.0234 (12) | 0.0011 (10) | 0.0033 (9) | −0.0011 (10) |
| C8 | 0.0193 (11) | 0.0171 (11) | 0.0281 (12) | −0.0003 (9) | −0.0020 (9) | −0.0003 (9) |
| C9 | 0.0266 (12) | 0.0166 (11) | 0.0264 (12) | −0.0020 (9) | −0.0009 (10) | 0.0013 (9) |
| C10 | 0.0258 (12) | 0.0218 (12) | 0.0237 (12) | −0.0042 (10) | 0.0029 (9) | −0.0007 (9) |
| C11 | 0.0183 (11) | 0.0328 (14) | 0.0330 (14) | −0.0036 (10) | −0.0004 (10) | −0.0013 (11) |
| C12 | 0.0359 (15) | 0.0201 (11) | 0.0311 (14) | −0.0012 (11) | −0.0019 (11) | 0.0030 (10) |
| C13 | 0.0343 (15) | 0.0339 (15) | 0.0403 (16) | −0.0016 (13) | −0.0050 (12) | 0.0139 (13) |
| C14 | 0.0436 (17) | 0.0312 (15) | 0.0365 (16) | 0.0045 (13) | −0.0029 (13) | 0.0103 (12) |
| C15 | 0.0474 (19) | 0.054 (2) | 0.0369 (17) | 0.0059 (17) | −0.0025 (14) | 0.0178 (15) |
| C16 | 0.0428 (17) | 0.0348 (15) | 0.0298 (14) | −0.0013 (13) | −0.0064 (12) | 0.0079 (12) |
| C17 | 0.0480 (19) | 0.059 (2) | 0.0334 (16) | 0.0098 (17) | −0.0005 (14) | 0.0101 (15) |
Geometric parameters (Å, °) top
| Br1—C17 | 1.947 (3) | C9—C12 | 1.527 (4) |
| O1—C8 | 1.221 (3) | C9—C10 | 1.531 (4) |
| O2—C10 | 1.222 (3) | C9—H9 | 0.9800 |
| N1—C8 | 1.373 (3) | C11—H11A | 0.9600 |
| N1—C1 | 1.419 (3) | C11—H11B | 0.9600 |
| N1—C7 | 1.469 (3) | C11—H11C | 0.9600 |
| N2—C10 | 1.359 (3) | C12—C13 | 1.514 (4) |
| N2—C6 | 1.420 (3) | C12—H12A | 0.9700 |
| N2—C11 | 1.472 (3) | C12—H12B | 0.9700 |
| C1—C6 | 1.402 (3) | C13—C14 | 1.533 (4) |
| C1—C2 | 1.402 (4) | C13—H13A | 0.9700 |
| C2—C3 | 1.380 (4) | C13—H13B | 0.9700 |
| C2—H2 | 0.9300 | C14—C15 | 1.511 (5) |
| C3—C4 | 1.396 (4) | C14—H14A | 0.9700 |
| C3—H3 | 0.9300 | C14—H14B | 0.9700 |
| C4—C5 | 1.382 (4) | C15—C16 | 1.517 (4) |
| C4—H4 | 0.9300 | C15—H15A | 0.9700 |
| C5—C6 | 1.395 (4) | C15—H15B | 0.9700 |
| C5—H5 | 0.9300 | C16—C17 | 1.505 (5) |
| C7—H7A | 0.9600 | C16—H16A | 0.9700 |
| C7—H7B | 0.9600 | C16—H16B | 0.9700 |
| C7—H7C | 0.9600 | C17—H17A | 0.9700 |
| C8—C9 | 1.526 (4) | C17—H17B | 0.9700 |
| | | |
| C8—N1—C1 | 123.5 (2) | N2—C11—H11A | 109.5 |
| C8—N1—C7 | 118.6 (2) | N2—C11—H11B | 109.5 |
| C1—N1—C7 | 117.7 (2) | H11A—C11—H11B | 109.5 |
| C10—N2—C6 | 123.5 (2) | N2—C11—H11C | 109.5 |
| C10—N2—C11 | 118.3 (2) | H11A—C11—H11C | 109.5 |
| C6—N2—C11 | 118.0 (2) | H11B—C11—H11C | 109.5 |
| C6—C1—C2 | 118.9 (2) | C13—C12—C9 | 113.7 (2) |
| C6—C1—N1 | 122.3 (2) | C13—C12—H12A | 108.8 |
| C2—C1—N1 | 118.7 (2) | C9—C12—H12A | 108.8 |
| C3—C2—C1 | 120.9 (2) | C13—C12—H12B | 108.8 |
| C3—C2—H2 | 119.5 | C9—C12—H12B | 108.8 |
| C1—C2—H2 | 119.5 | H12A—C12—H12B | 107.7 |
| C2—C3—C4 | 120.2 (2) | C12—C13—C14 | 113.4 (3) |
| C2—C3—H3 | 119.9 | C12—C13—H13A | 108.9 |
| C4—C3—H3 | 119.9 | C14—C13—H13A | 108.9 |
| C5—C4—C3 | 119.3 (2) | C12—C13—H13B | 108.9 |
| C5—C4—H4 | 120.4 | C14—C13—H13B | 108.9 |
| C3—C4—H4 | 120.4 | H13A—C13—H13B | 107.7 |
| C4—C5—C6 | 121.4 (2) | C15—C14—C13 | 112.4 (3) |
| C4—C5—H5 | 119.3 | C15—C14—H14A | 109.1 |
| C6—C5—H5 | 119.3 | C13—C14—H14A | 109.1 |
| C5—C6—C1 | 119.4 (2) | C15—C14—H14B | 109.1 |
| C5—C6—N2 | 118.9 (2) | C13—C14—H14B | 109.1 |
| C1—C6—N2 | 121.7 (2) | H14A—C14—H14B | 107.9 |
| N1—C7—H7A | 109.5 | C14—C15—C16 | 115.0 (3) |
| N1—C7—H7B | 109.5 | C14—C15—H15A | 108.5 |
| H7A—C7—H7B | 109.5 | C16—C15—H15A | 108.5 |
| N1—C7—H7C | 109.5 | C14—C15—H15B | 108.5 |
| H7A—C7—H7C | 109.5 | C16—C15—H15B | 108.5 |
| H7B—C7—H7C | 109.5 | H15A—C15—H15B | 107.5 |
| O1—C8—N1 | 122.4 (2) | C17—C16—C15 | 110.6 (3) |
| O1—C8—C9 | 122.8 (2) | C17—C16—H16A | 109.5 |
| N1—C8—C9 | 114.8 (2) | C15—C16—H16A | 109.5 |
| C12—C9—C8 | 114.0 (2) | C17—C16—H16B | 109.5 |
| C12—C9—C10 | 111.3 (2) | C15—C16—H16B | 109.5 |
| C8—C9—C10 | 105.0 (2) | H16A—C16—H16B | 108.1 |
| C12—C9—H9 | 108.8 | C16—C17—Br1 | 113.1 (2) |
| C8—C9—H9 | 108.8 | C16—C17—H17A | 109.0 |
| C10—C9—H9 | 108.8 | Br1—C17—H17A | 109.0 |
| O2—C10—N2 | 122.4 (3) | C16—C17—H17B | 109.0 |
| O2—C10—C9 | 122.3 (2) | Br1—C17—H17B | 109.0 |
| N2—C10—C9 | 115.3 (2) | H17A—C17—H17B | 107.8 |
| | | |
| C8—N1—C1—C6 | −47.6 (3) | C1—N1—C8—C9 | 2.9 (3) |
| C7—N1—C1—C6 | 137.3 (2) | C7—N1—C8—C9 | 177.9 (2) |
| C8—N1—C1—C2 | 134.5 (3) | O1—C8—C9—C12 | 17.7 (4) |
| C7—N1—C1—C2 | −40.6 (3) | N1—C8—C9—C12 | −164.4 (2) |
| C6—C1—C2—C3 | −1.0 (4) | O1—C8—C9—C10 | −104.4 (3) |
| N1—C1—C2—C3 | 177.0 (2) | N1—C8—C9—C10 | 73.5 (3) |
| C1—C2—C3—C4 | 1.3 (4) | C6—N2—C10—O2 | 177.1 (3) |
| C2—C3—C4—C5 | −0.6 (4) | C11—N2—C10—O2 | 2.0 (4) |
| C3—C4—C5—C6 | −0.6 (4) | C6—N2—C10—C9 | −5.0 (4) |
| C4—C5—C6—C1 | 0.9 (4) | C11—N2—C10—C9 | 179.9 (2) |
| C4—C5—C6—N2 | −176.7 (2) | C12—C9—C10—O2 | −18.6 (4) |
| C2—C1—C6—C5 | −0.2 (4) | C8—C9—C10—O2 | 105.2 (3) |
| N1—C1—C6—C5 | −178.1 (2) | C12—C9—C10—N2 | 163.5 (2) |
| C2—C1—C6—N2 | 177.4 (2) | C8—C9—C10—N2 | −72.7 (3) |
| N1—C1—C6—N2 | −0.5 (4) | C8—C9—C12—C13 | 62.5 (3) |
| C10—N2—C6—C5 | −133.0 (3) | C10—C9—C12—C13 | −178.9 (2) |
| C11—N2—C6—C5 | 42.1 (3) | C9—C12—C13—C14 | 168.8 (3) |
| C10—N2—C6—C1 | 49.5 (4) | C12—C13—C14—C15 | 164.8 (3) |
| C11—N2—C6—C1 | −135.5 (3) | C13—C14—C15—C16 | 171.7 (3) |
| C1—N1—C8—O1 | −179.2 (2) | C14—C15—C16—C17 | 174.1 (3) |
| C7—N1—C8—O1 | −4.1 (4) | C15—C16—C17—Br1 | 175.0 (3) |
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| C7—H7B···O1i | 0.96 | 2.58 | 3.430 (3) | 147 |
| C7—H7C···O2ii | 0.96 | 2.51 | 3.471 (3) | 174 |
| C11—H11B···O1ii | 0.96 | 2.60 | 3.551 (3) | 173 |
| Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) −x+1/2, y+1/2, −z+1/2. |
Table 1
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| C7—H7B···O1i | 0.96 | 2.58 | 3.430 (3) | 147 |
| C7—H7C···O2ii | 0.96 | 2.51 | 3.471 (3) | 174 |
| C11—H11B···O1ii | 0.96 | 2.60 | 3.551 (3) | 173 |
| Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) −x+1/2, y+1/2, −z+1/2. |
We thank Université Mohammed V-Agdal and the University of Malaya for
supporting this study.
Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
Bruker (2008). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.
Mondieig, M., Négrier, Ph., Léger, J. M., Benali, B., Lazar, Z., Elassyry, A., Jarmouni, C., Lakhrissi, B. & Massoui, M. (2005). Anal. Sci. X-Ray Struct. Anal. Online, 21, x145–x146.
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany.
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
The methylene part of 1,5-dimethyl-1,5-benzodiazepine-2,4-dione is relatively acidic, and one proton can be abstracted by using potassium t-butoxide; the resulting carbanion can undergo a nucleophlilic subsitution with a dibromoalkane to form 3-substituted derivatives. In this study, the compound is reacted with 1,6-dibromohexane the title compound (Scheme I, Fig. 1).