supplementary materials


HTML versionpdf versioncif file3d viewstructure factorssupplementary materialsCIF check reportsimilar papers Open access

bt5540 scheme

Acta Cryst. (2011). E67, o1424    [ doi:10.1107/S1600536811017089 ]

Dimethyl 2-(3-chlorophenyl)-6-hydroxy-6-methyl-4-(methylamino)cyclohex-3-ene-1,3-dicarboxylate

S. Amirthaganesan, S. Sundaramoorthy, D. Velmurugan and Y. T. Jeong

Abstract top

In the title compound, C18H22ClNO5, the cyclohexene ring adopts a distorted half-chair conformation. The molecular structure is stabilized by pairs of intramolecular N-H...O and O-H...O interactions, generating S(6) motifs. In the crystal, the molecules are linked by intermolecular C-H...O interactions, forming centrosymmetric dimers.

Comment top

The title compound has been obtained as a minor product during the synthesis of 2,4-bismethoxycarbonyl-3-(3-chlorophenyl)- 5-hydroxy-5-methylcyclohexanone (Pandiarajan et al., 2005). The synthesized cyclohexanone has been purified by the recrystallization process in ethanol solvent. The expected compound regenerated and settled as powder along with some small crystals. The obtained crystals were analysed by single-crystal XRD and the results clearly evidence the formation of the title compound.

The ORTEP diagram of the title compound is shown in Fig.1. The cyclohexane ring adopts a distorted half-chair conformation with the puckering parameters (Cremer & Pople, 1975) and the smallest displacement asymmetry parameters (Nardelli, 1983) being q2 = 0.4038 (16) Å, q3 = -0.3083 (16) Å, QT = 0.5080 (16) Å, and θ = 127.36 (18)°. Atom Cl1 deviates from the plane of the C1—C6 benzene ring by 0.034 (1) Å.

The crystal packing is stabilized by C—H···O intermolecular interactions. The molecular structure is stabilized by N—H···O and O—H···O hydrogen bonds, wherein, atom N1 and O3 act as donor to O1 and O4, to generate S(6) motifs, respectively. In the crystal structure, the molecules at (x, y, z) and (1 - x,1 - y,1 - z) are linked by C(15)—H(15B) ···O(1) hydrogen bonds, generating a centrosymmetric dimeric ring motif R22(14) (Bernstein et al., 1995).

Related literature top

For the synthesis see: Pandiarajan et al. (2005). For related structures, see: Amézquita-Valencia et al. (2009, 2010); Venter et al. (2010). For ring conformational analysis, see: Cremer & Pople (1975); Nardelli (1983). For hydrogen-bond motifs, see: Bernstein et al. (1995).

Experimental top

A mixture of 3-chlorobenzaldehyde (1 equvi) and methyl acetoacetate (2 equvi) and 40% methylamine solution (1 equvi) in ethanol was kept in hot water bath for about 30 minutes. It was kept aside for a day. The separated solid was recrystallized from ethanol.

Refinement top

The C bound H atoms positioned geometrically (C—H = 0.93–0.98 Å) and allowed to ride on their parent atoms, with 1.5Ueq(C) for methyl H and 1.2 Ueq(C) for other H atoms.

Computing details top

Data collection: APEX2 (Bruker, 2008); cell refinement: SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).

Figures top
[Figure 1] Fig. 1. Perspective view of the molecule showing the thermal ellipsoids are drawn at 30% probability level.
[Figure 2] Fig. 2. The crystal packing of the molecules viewed along a face. For clarity, hydrogen atoms which are not involved in hydrogen bonding are omitted
Dimethyl 2-(3-chlorophenyl)-6-hydroxy-6-methyl-4-(methylamino)cyclohex-3-ene- 1,3-dicarboxylate top
Crystal data top
C18H22ClNO5F(000) = 776
Mr = 367.82Dx = 1.309 Mg m−3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1222 reflections
a = 11.962 (3) Åθ = 1.8–28.3°
b = 9.118 (4) ŵ = 0.23 mm−1
c = 17.704 (5) ÅT = 293 K
β = 104.890 (3)°Block, colourless
V = 1866.1 (11) Å30.25 × 0.22 × 0.2 mm
Z = 4
Data collection top
Bruker SMART APEXII area-detector
diffractometer		4638 independent reflections
Radiation source: fine-focus sealed tube3337 reflections with I > 2σ(I)
graphiteRint = 0.024
ω and φ scansθmax = 28.3°, θmin = 1.8°
Absorption correction: multi-scan
(SADABS; Bruker, 2008)		h = −15→15
Tmin = 0.944, Tmax = 0.955k = −7→12
17431 measured reflectionsl = −23→23
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.0627P)2 + 0.4709P]
where P = (Fo2 + 2Fc2)/3
4638 reflections(Δ/σ)max = 0.009
231 parametersΔρmax = 0.35 e Å−3
0 restraintsΔρmin = −0.46 e Å−3
Crystal data top
C18H22ClNO5V = 1866.1 (11) Å3
Mr = 367.82Z = 4
Monoclinic, P21/cMo Kα radiation
a = 11.962 (3) ŵ = 0.23 mm−1
b = 9.118 (4) ÅT = 293 K
c = 17.704 (5) Å0.25 × 0.22 × 0.2 mm
β = 104.890 (3)°
Data collection top
Bruker SMART APEXII area-detector
diffractometer		4638 independent reflections
Absorption correction: multi-scan
(SADABS; Bruker, 2008)		3337 reflections with I > 2σ(I)
Tmin = 0.944, Tmax = 0.955Rint = 0.024
17431 measured reflectionsθmax = 28.3°
Refinement top
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.138Δρmax = 0.35 e Å−3
S = 1.04Δρmin = −0.46 e Å−3
4638 reflectionsAbsolute structure: ?
231 parametersFlack parameter: ?
0 restraintsRogers parameter: ?
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.20024 (13)0.2336 (2)0.66810 (9)0.0491 (4)
H10.26930.19750.66060.059*
C20.10067 (15)0.1499 (2)0.64705 (10)0.0606 (5)
C3−0.00304 (16)0.2004 (3)0.65606 (12)0.0762 (7)
H3−0.06960.14340.64120.091*
C4−0.00607 (16)0.3366 (4)0.68751 (14)0.0845 (8)
H4−0.07570.37220.69440.101*
C50.09225 (15)0.4229 (3)0.70946 (12)0.0671 (5)
H50.08810.51570.73030.081*
C60.19700 (12)0.37074 (19)0.70030 (9)0.0454 (4)
C70.30800 (12)0.45902 (17)0.72953 (8)0.0404 (3)
H70.28680.55890.74080.048*
C80.37441 (12)0.38775 (16)0.80710 (8)0.0405 (3)
H80.37660.28160.79890.049*
C90.49940 (13)0.44328 (17)0.83388 (9)0.0421 (3)
C100.56091 (13)0.39960 (18)0.77252 (9)0.0450 (3)
H10A0.63580.44750.78430.054*
H10B0.57430.29460.77580.054*
C110.49636 (13)0.43744 (17)0.68999 (9)0.0410 (3)
C120.38012 (13)0.46821 (16)0.67106 (8)0.0404 (3)
C130.32399 (14)0.51982 (17)0.59341 (9)0.0444 (3)
C140.15531 (18)0.6312 (3)0.51469 (11)0.0699 (5)
H14A0.19770.70820.49760.105*
H14B0.08180.66810.51840.105*
H14C0.14350.55190.47780.105*
C150.68410 (14)0.4189 (2)0.65474 (11)0.0597 (5)
H15A0.72250.49800.68690.090*
H15B0.70750.41720.60680.090*
H15C0.70450.32760.68180.090*
C160.56123 (15)0.3786 (2)0.91304 (9)0.0558 (4)
H16A0.64180.40410.92510.084*
H16B0.55330.27380.91120.084*
H16C0.52760.41720.95260.084*
C170.31063 (14)0.41559 (19)0.86895 (9)0.0469 (4)
C180.2187 (3)0.3077 (3)0.95785 (16)0.0975 (9)
H18A0.27350.33211.00610.146*
H18B0.18140.21680.96380.146*
H18C0.16180.38400.94420.146*
N10.56045 (12)0.43967 (18)0.63774 (8)0.0528 (4)
H1A0.52440.45490.58970.063*
O10.36279 (10)0.51675 (14)0.53585 (7)0.0560 (3)
O20.21941 (10)0.57946 (15)0.58975 (7)0.0584 (3)
O30.50425 (11)0.59997 (12)0.83719 (7)0.0542 (3)
H4A0.46530.62980.86600.081*
O40.29242 (13)0.53525 (15)0.89139 (8)0.0645 (4)
O50.27827 (13)0.29272 (15)0.89645 (8)0.0682 (4)
Cl10.10795 (6)−0.02490 (8)0.60884 (5)0.1010 (3)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0376 (8)0.0622 (10)0.0469 (8)−0.0061 (7)0.0098 (6)0.0010 (8)
C20.0497 (9)0.0767 (13)0.0517 (10)−0.0198 (9)0.0062 (8)0.0058 (9)
C30.0414 (10)0.119 (2)0.0647 (12)−0.0225 (11)0.0068 (8)0.0159 (13)
C40.0342 (9)0.140 (2)0.0821 (15)0.0098 (12)0.0193 (9)0.0128 (16)
C50.0430 (9)0.0944 (15)0.0655 (11)0.0141 (10)0.0169 (8)−0.0020 (11)
C60.0350 (7)0.0616 (10)0.0400 (7)0.0044 (7)0.0102 (6)0.0052 (7)
C70.0387 (7)0.0420 (8)0.0394 (7)0.0054 (6)0.0081 (6)−0.0008 (6)
C80.0421 (7)0.0376 (7)0.0403 (7)0.0038 (6)0.0079 (6)−0.0009 (6)
C90.0426 (8)0.0385 (8)0.0417 (7)0.0042 (6)0.0044 (6)−0.0030 (6)
C100.0374 (7)0.0481 (8)0.0466 (8)0.0037 (6)0.0055 (6)−0.0020 (7)
C110.0403 (7)0.0386 (7)0.0437 (8)−0.0035 (6)0.0102 (6)−0.0024 (6)
C120.0397 (7)0.0400 (7)0.0403 (7)−0.0017 (6)0.0082 (6)−0.0007 (6)
C130.0426 (8)0.0434 (8)0.0448 (8)−0.0040 (6)0.0067 (6)−0.0010 (6)
C140.0613 (11)0.0841 (14)0.0560 (10)0.0188 (10)−0.0002 (9)0.0116 (10)
C150.0439 (9)0.0733 (12)0.0662 (11)0.0014 (8)0.0220 (8)0.0039 (9)
C160.0540 (9)0.0634 (11)0.0444 (8)0.0121 (8)0.0024 (7)0.0013 (8)
C170.0467 (8)0.0512 (9)0.0415 (8)0.0065 (7)0.0089 (6)0.0045 (7)
C180.119 (2)0.0965 (19)0.1025 (18)0.0165 (16)0.0740 (17)0.0306 (15)
N10.0410 (7)0.0695 (9)0.0493 (8)−0.0001 (6)0.0142 (6)0.0047 (7)
O10.0550 (7)0.0707 (8)0.0418 (6)−0.0006 (6)0.0115 (5)0.0031 (6)
O20.0510 (7)0.0724 (8)0.0494 (6)0.0148 (6)0.0085 (5)0.0126 (6)
O30.0582 (7)0.0396 (6)0.0613 (7)0.0005 (5)0.0093 (6)−0.0078 (5)
O40.0821 (9)0.0578 (8)0.0607 (8)0.0108 (7)0.0313 (7)−0.0045 (6)
O50.0826 (9)0.0585 (8)0.0754 (9)0.0083 (7)0.0420 (7)0.0149 (7)
Cl10.0875 (4)0.0874 (5)0.1206 (5)−0.0422 (3)0.0133 (4)−0.0251 (4)
Geometric parameters (Å, °) top
C1—C61.379 (2)C11—N11.345 (2)
C1—C21.383 (2)C11—C121.373 (2)
C1—H10.9300C12—C131.445 (2)
C2—C31.370 (3)C13—O11.2237 (19)
C2—Cl11.743 (2)C13—O21.350 (2)
C3—C41.365 (4)C14—O21.433 (2)
C3—H30.9300C14—H14A0.9600
C4—C51.385 (3)C14—H14B0.9600
C4—H40.9300C14—H14C0.9600
C5—C61.388 (2)C15—N11.444 (2)
C5—H50.9300C15—H15A0.9600
C6—C71.525 (2)C15—H15B0.9600
C7—C121.511 (2)C15—H15C0.9600
C7—C81.542 (2)C16—H16A0.9600
C7—H70.9800C16—H16B0.9600
C8—C171.508 (2)C16—H16C0.9600
C8—C91.534 (2)C17—O41.200 (2)
C8—H80.9800C17—O51.319 (2)
C9—O31.430 (2)C18—O51.451 (2)
C9—C101.514 (2)C18—H18A0.9600
C9—C161.525 (2)C18—H18B0.9600
C10—C111.507 (2)C18—H18C0.9600
C10—H10A0.9700N1—H1A0.8600
C10—H10B0.9700O3—H4A0.8200
C6—C1—C2119.88 (16)N1—C11—C12123.34 (14)
C6—C1—H1120.1N1—C11—C10115.45 (13)
C2—C1—H1120.1C12—C11—C10121.20 (13)
C3—C2—C1121.8 (2)C11—C12—C13119.52 (14)
C3—C2—Cl1119.31 (16)C11—C12—C7122.84 (13)
C1—C2—Cl1118.94 (16)C13—C12—C7117.55 (13)
C4—C3—C2118.21 (19)O1—C13—O2120.94 (14)
C4—C3—H3120.9O1—C13—C12127.01 (15)
C2—C3—H3120.9O2—C13—C12112.03 (13)
C3—C4—C5121.43 (19)O2—C14—H14A109.5
C3—C4—H4119.3O2—C14—H14B109.5
C5—C4—H4119.3H14A—C14—H14B109.5
C4—C5—C6120.0 (2)O2—C14—H14C109.5
C4—C5—H5120.0H14A—C14—H14C109.5
C6—C5—H5120.0H14B—C14—H14C109.5
C1—C6—C5118.74 (17)N1—C15—H15A109.5
C1—C6—C7120.30 (13)N1—C15—H15B109.5
C5—C6—C7120.86 (17)H15A—C15—H15B109.5
C12—C7—C6113.42 (12)N1—C15—H15C109.5
C12—C7—C8112.29 (12)H15A—C15—H15C109.5
C6—C7—C8106.51 (12)H15B—C15—H15C109.5
C12—C7—H7108.1C9—C16—H16A109.5
C6—C7—H7108.1C9—C16—H16B109.5
C8—C7—H7108.1H16A—C16—H16B109.5
C17—C8—C9110.78 (12)C9—C16—H16C109.5
C17—C8—C7109.55 (12)H16A—C16—H16C109.5
C9—C8—C7111.98 (12)H16B—C16—H16C109.5
C17—C8—H8108.1O4—C17—O5123.70 (16)
C9—C8—H8108.1O4—C17—C8124.20 (15)
C7—C8—H8108.1O5—C17—C8112.10 (14)
O3—C9—C10105.67 (13)O5—C18—H18A109.5
O3—C9—C16110.09 (13)O5—C18—H18B109.5
C10—C9—C16110.33 (13)H18A—C18—H18B109.5
O3—C9—C8111.62 (12)O5—C18—H18C109.5
C10—C9—C8107.83 (12)H18A—C18—H18C109.5
C16—C9—C8111.13 (14)H18B—C18—H18C109.5
C11—C10—C9114.41 (13)C11—N1—C15126.10 (14)
C11—C10—H10A108.7C11—N1—H1A117.0
C9—C10—H10A108.7C15—N1—H1A117.0
C11—C10—H10B108.7C13—O2—C14116.46 (14)
C9—C10—H10B108.7C9—O3—H4A109.5
H10A—C10—H10B107.6C17—O5—C18116.35 (16)
C6—C1—C2—C31.1 (3)C8—C9—C10—C1149.17 (18)
C6—C1—C2—Cl1−178.36 (12)C9—C10—C11—N1161.63 (14)
C1—C2—C3—C4−0.7 (3)C9—C10—C11—C12−17.9 (2)
Cl1—C2—C3—C4178.76 (17)N1—C11—C12—C13−6.3 (2)
C2—C3—C4—C50.4 (3)C10—C11—C12—C13173.14 (14)
C3—C4—C5—C6−0.6 (3)N1—C11—C12—C7177.30 (14)
C2—C1—C6—C5−1.2 (2)C10—C11—C12—C7−3.2 (2)
C2—C1—C6—C7175.25 (15)C6—C7—C12—C11−130.26 (16)
C4—C5—C6—C11.0 (3)C8—C7—C12—C11−9.5 (2)
C4—C5—C6—C7−175.46 (17)C6—C7—C12—C1353.32 (18)
C1—C6—C7—C1249.45 (19)C8—C7—C12—C13174.13 (13)
C5—C6—C7—C12−134.17 (16)C11—C12—C13—O113.8 (3)
C1—C6—C7—C8−74.57 (17)C7—C12—C13—O1−169.67 (15)
C5—C6—C7—C8101.81 (17)C11—C12—C13—O2−164.39 (14)
C12—C7—C8—C17165.93 (13)C7—C12—C13—O212.1 (2)
C6—C7—C8—C17−69.36 (16)C9—C8—C17—O462.5 (2)
C12—C7—C8—C942.61 (17)C7—C8—C17—O4−61.5 (2)
C6—C7—C8—C9167.32 (12)C9—C8—C17—O5−116.62 (15)
C17—C8—C9—O3−69.40 (16)C7—C8—C17—O5119.35 (15)
C7—C8—C9—O353.22 (16)C12—C11—N1—C15175.24 (17)
C17—C8—C9—C10174.96 (12)C10—C11—N1—C15−4.3 (2)
C7—C8—C9—C10−62.42 (16)O1—C13—O2—C143.0 (2)
C17—C8—C9—C1653.92 (17)C12—C13—O2—C14−178.66 (16)
C7—C8—C9—C16176.54 (13)O4—C17—O5—C18−0.7 (3)
O3—C9—C10—C11−70.31 (16)C8—C17—O5—C18178.47 (18)
C16—C9—C10—C11170.72 (14)
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.862.02.673 (2)134
O3—H4A···O40.822.392.990 (2)131
C15—H15B···O1i0.962.523.327 (3)142
Symmetry codes: (i) −x+1, −y+1, −z+1.
Table 1
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.862.02.673 (2)134
O3—H4A···O40.822.392.990 (2)131
C15—H15B···O1i0.962.523.327 (3)142
Symmetry codes: (i) −x+1, −y+1, −z+1.
Acknowledgements top

This study was supported financially by Pukyong National University in the 2009 Post-Doc. Program. SS and DV thank the TBI X-ray Facility, CAS in Crystallography and Biophysics, University of Madras, India, for the data collection and the University Grants Commission (UGC&SAP) for financial support.

references
References top

Amézquita-Valencia, M., Hernández-Ortega, S., Suárez-Ortiz, G. A. & Cabrera, A. (2010). Acta Cryst. E66, o500.

Amézquita-Valencia, M., Hernández-Ortega, S., Suárez-Ortiz, G. A., Toscano, R. A. & Cabrera, A. (2009). Acta Cryst. E65, o2728.

Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.

Bruker (2008). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.

Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358.

Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.

Nardelli, M. (1983). Acta Cryst. C39, 1141–1142.

Pandiarajan, K., Sabapathy Mohan, R. T., Gomathi, R. & Muthukumaran, G. (2005). Mag. Reson. Chem. 43, 430–434.

Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.

Spek, A. L. (2009). Acta Cryst. D65, 148–155.

Venter, G. J. S., Steyl, G. & Roodt, A. (2010). Acta Cryst. E66, o3011–o3012.