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ISSN: 2056-9890

3,3′-Di­cyclo­pentyl-1,1′-(1,3-phenyl­enedi­methyl­ene)dibenzimidazol-1-ium bis­­(hexa­fluoro­phosphate)

aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my

(Received 7 May 2012; accepted 18 May 2012; online 23 May 2012)

In the title compound, C32H36N42+·2PF6, the cation and the anions each have crystallographic twofold rotation symmetry. The benzimidazole ring is almost planar [r.m.s. deviation = 0.0161 (1) Å] and makes a dihedral angle of 5.77 (4)° with its symmetry-related component and a dihedral angle of 80.96 (5)° with the central benzene ring. The cyclo­pentyl ring adopts a half-chair conformation. In the crystal, mol­ecules are linked into a three-dimensional network through C—H⋯F hydrogen bonds. A C—H⋯π inter­action is also observed.

Related literature

For the biological activity of benzimidazole, see: Shaharyar et al. (2012[Shaharyar, M., Mazumder, A., Salahuddin, Garg, R. & Rishabh, D. P. (2012). Arab. J. Chem.. doi:10.1016/j.arabjc.2011.04.013.]); Mohan et al. (2011[Mohan, V. G., Sreenivasulu, N., Rao, A. S. & Chigiri, S. (2011). Der Pharma Chem. 3, 446-452.]). For related structures, see: Haque et al. (2011[Haque, R. A., Iqbal, M. A., Hemamalini, M. & Fun, H.-K. (2011). Acta Cryst. E67, o1814-o1815.], 2012[Haque, R. A., Iqbal, M. A., Budagumpi, S., Hemamalini, M. & Fun, H.-K. (2012). Acta Cryst. E68, o573.]). For puckering parameters, see: Cremer & Pople (1975[Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354-1358.]).

[Scheme 1]

Experimental

Crystal data
  • C32H36N42+·2PF6

  • Mr = 766.59

  • Orthorhombic, C 2221

  • a = 7.0699 (1) Å

  • b = 20.4852 (3) Å

  • c = 22.5416 (3) Å

  • V = 3264.66 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.23 mm−1

  • T = 100 K

  • 0.44 × 0.13 × 0.11 mm

Data collection
  • Bruker SMART APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009[Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]) Tmin = 0.903, Tmax = 0.974

  • 19037 measured reflections

  • 4758 independent reflections

  • 4407 reflections with I > 2σ(I)

  • Rint = 0.024

Refinement
  • R[F2 > 2σ(F2)] = 0.032

  • wR(F2) = 0.078

  • S = 1.05

  • 4758 reflections

  • 228 parameters

  • H-atom parameters constrained

  • Δρmax = 0.29 e Å−3

  • Δρmin = −0.24 e Å−3

  • Absolute structure: Flack (1983[Flack, H. D. (1983). Acta Cryst. A39, 876-881.]), 2086 Friedel pairs

  • Flack parameter: 0.02 (7)

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
C2—H2A⋯F3i 0.95 2.44 3.3814 (18) 171
C5—H5B⋯F4ii 0.99 2.41 3.2670 (17) 145
C8—H8A⋯F2iii 0.95 2.46 3.3912 (18) 167
C12—H12A⋯F4ii 0.95 2.42 3.2252 (17) 142
C13—H13A⋯F2iv 1.00 2.51 3.4090 (18) 150
C13—H13A⋯F3iv 1.00 2.31 3.2124 (17) 149
C9—H9ACg1iv 0.95 2.79 3.6416 (15) 149
Symmetry codes: (i) x, -y, -z+1; (ii) [-x+{\script{1\over 2}}, -y+{\script{1\over 2}}, z-{\script{1\over 2}}]; (iii) x-1, y, z; (iv) [x-{\script{1\over 2}}, -y+{\script{1\over 2}}, -z+1].

Data collection: APEX2 (Bruker, 2009[Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]); cell refinement: SAINT (Bruker, 2009[Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009[Spek, A. L. (2009). Acta Cryst. D65, 148-155.]).

Supporting information


Comment top

Benzimidazole, a heterocyclic aromatic organic compound, has a wide variety of biological activities (Shaharyar et al., 2012; Mohan et al., 2011). Previously, we have reported the crystal structures of benzimidazole with various substitutions (Haque et al., 2011, 2012). In this report, we describe the crystal structure of a meta-xylyl linked bis-benzimidazolium salt with cyclopentyl substitution.

All parameters in the title compound (Fig. 1) are within normal ranges. The complete molecule, as well as the anions, is generated by a crystallographic twofold axis. The benzimidazole (N1—N2/C6—C12) ring is planar with the r.m.s. 0.0161 (1) Å. It makes a dihedral angle of 5.77 (4)° with its symmetry-related component and of 80.96 (5)° with the central benzene ring (C1—C4/C2A—C3A). The cyclopentyl ring adopts a half chair conformation with puckering parameters Q = 0.4256 (18) Å and ϕ = 344.9 (3)° (Cremer & Pople, 1975).

In the crystal structure (Fig. 2), the molecules are linked into a three-dimensional network through intermolecular C—H···F hydrogen bonds and C—H···π interactions involving the centroid of the C6—C11 ring (Table 1).

Related literature top

For the biological activity of benzimidazole, see: Shaharyar et al. (2012); Mohan et al. (2011). For related structures, see: Haque et al. (2011, 2012). For puckering parameters, see: Cremer & Pople (1975).

Experimental top

To a solution of 1,3-(bromomethyl)benzene (2.64 g, 0.01 mol) in 50 ml of 1,4-dioxane, 1-cyclopentyl-1H-benzolimidazole (3.73 g, 0.02 mol) was added. The mixture was refluxed at 373 K for 24 h. The resulting brown thick liquid product was decanted, washed with fresh 1,4-dioxane (3 × 5 ml) and converted directly to its hexafluorophosphate counterpart by metathesis reaction using KPF6 (3.60 g, 0.02 mol) in 40 ml of methanol/water. The white precipitate was collected, washed with fresh methanol to give the title product as a white solid (4.66 g, 97%). M.p. 518–519 K. Crystals suitable for X-ray diffraction studies were obtained by slow evaporation of the salt solution in a mixture of acetonitrile/methanol (1:1 v/v) at ambient temperature.

Refinement top

All H atoms attached to C atoms were fixed geometrically and refined as riding with C—H = 0.95–1.00 Å and Uiso(H) = 1.2Ueq(C).

Computing details top

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).

Figures top
[Figure 1] Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids. Hydrogen atoms are shown as spheres of arbitrary radius. Atoms with suffix A, B and C are generated by the symmetry operators (-x, y, 1/2-z), (x, -y, 1-z) and (-x, y, 3/2-z), respectively.
[Figure 2] Fig. 2. The crystal packing of the title compound. Dashed lines indicate hydrogen bonds. H atoms not involved in hydrogen bonding interactions have been omitted for clarity.
3,3'-Dicyclopentyl-1,1'-(1,3-phenylenedimethylene)dibenzimidazol-1-ium bis(hexafluorophosphate) top
Crystal data top
C32H36N42+·2PF6F(000) = 1576
Mr = 766.59Dx = 1.560 Mg m3
Orthorhombic, C2221Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2c 2Cell parameters from 9943 reflections
a = 7.0699 (1) Åθ = 2.2–29.9°
b = 20.4852 (3) ŵ = 0.23 mm1
c = 22.5416 (3) ÅT = 100 K
V = 3264.66 (8) Å3Block, colourless
Z = 40.44 × 0.13 × 0.11 mm
Data collection top
Bruker SMART APEXII CCD area-detector
diffractometer
4758 independent reflections
Radiation source: fine-focus sealed tube4407 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
ϕ and ω scansθmax = 30.0°, θmin = 1.8°
Absorption correction: multi-scan
(SADABS; Bruker, 2009)
h = 99
Tmin = 0.903, Tmax = 0.974k = 2828
19037 measured reflectionsl = 2831
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.078 w = 1/[σ2(Fo2) + (0.0411P)2 + 1.0871P]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
4758 reflectionsΔρmax = 0.29 e Å3
228 parametersΔρmin = 0.24 e Å3
0 restraintsAbsolute structure: Flack (1983), 2086 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.02 (7)
Crystal data top
C32H36N42+·2PF6V = 3264.66 (8) Å3
Mr = 766.59Z = 4
Orthorhombic, C2221Mo Kα radiation
a = 7.0699 (1) ŵ = 0.23 mm1
b = 20.4852 (3) ÅT = 100 K
c = 22.5416 (3) Å0.44 × 0.13 × 0.11 mm
Data collection top
Bruker SMART APEXII CCD area-detector
diffractometer
4758 independent reflections
Absorption correction: multi-scan
(SADABS; Bruker, 2009)
4407 reflections with I > 2σ(I)
Tmin = 0.903, Tmax = 0.974Rint = 0.024
19037 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.078Δρmax = 0.29 e Å3
S = 1.05Δρmin = 0.24 e Å3
4758 reflectionsAbsolute structure: Flack (1983), 2086 Friedel pairs
228 parametersAbsolute structure parameter: 0.02 (7)
0 restraints
Special details top

Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
P10.12643 (8)0.00000.50000.01579 (10)
F10.03216 (16)0.05234 (5)0.48352 (4)0.0333 (2)
F20.28761 (15)0.05230 (5)0.48369 (4)0.0313 (2)
F30.12649 (14)0.02573 (5)0.56726 (4)0.02558 (19)
P20.00000.20928 (3)0.75000.01858 (11)
F40.03085 (15)0.26421 (5)0.79953 (4)0.0304 (2)
F50.03160 (16)0.15392 (5)0.70063 (4)0.0331 (2)
F60.22344 (14)0.20932 (5)0.73648 (4)0.0307 (2)
N10.01439 (18)0.21030 (6)0.37157 (5)0.0166 (2)
N20.04694 (17)0.31380 (6)0.38710 (5)0.0158 (2)
C10.00000.01437 (9)0.25000.0217 (4)
H1A0.00000.03200.25000.026*
C20.0497 (2)0.04841 (7)0.30090 (7)0.0187 (3)
H2A0.08300.02520.33590.022*
C30.0511 (2)0.11646 (6)0.30090 (6)0.0155 (3)
C40.00000.15040 (9)0.25000.0171 (4)
H4A0.00000.19680.25000.020*
C50.1218 (2)0.15116 (6)0.35629 (6)0.0184 (3)
H5A0.11580.12040.39010.022*
H5B0.25610.16320.35040.022*
C60.1642 (2)0.21287 (7)0.39812 (6)0.0159 (3)
C70.2882 (2)0.16395 (7)0.41598 (7)0.0203 (3)
H7A0.26140.11910.40950.024*
C80.4523 (2)0.18423 (7)0.44364 (7)0.0215 (3)
H8A0.54040.15240.45680.026*
C90.4927 (2)0.25100 (7)0.45287 (6)0.0194 (3)
H9A0.60770.26280.47180.023*
C100.3694 (2)0.29965 (7)0.43506 (6)0.0168 (3)
H10A0.39660.34460.44110.020*
C110.2030 (2)0.27901 (6)0.40778 (6)0.0157 (3)
C120.0780 (2)0.27128 (7)0.36572 (6)0.0173 (3)
H12A0.19620.28280.34860.021*
C130.0262 (2)0.38548 (6)0.38878 (7)0.0187 (3)
H13A0.12420.40340.41630.022*
C140.0516 (3)0.41777 (8)0.32852 (8)0.0328 (4)
H14A0.18720.42130.31810.039*
H14B0.01470.39290.29710.039*
C150.0376 (3)0.48588 (8)0.33678 (10)0.0377 (5)
H15A0.11870.49700.30240.045*
H15B0.06200.51960.34070.045*
C160.1564 (2)0.48203 (7)0.39385 (8)0.0258 (3)
H16A0.28480.49980.38710.031*
H16B0.09560.50700.42620.031*
C170.1659 (2)0.40913 (7)0.40946 (7)0.0233 (3)
H17A0.26960.38700.38790.028*
H17B0.18280.40240.45260.028*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
P10.0180 (2)0.0139 (2)0.0155 (2)0.0000.0000.00104 (18)
F10.0360 (6)0.0354 (5)0.0287 (5)0.0206 (4)0.0024 (4)0.0028 (4)
F20.0348 (6)0.0286 (5)0.0304 (5)0.0119 (4)0.0112 (4)0.0012 (4)
F30.0298 (5)0.0311 (4)0.0158 (4)0.0089 (4)0.0008 (4)0.0032 (4)
P20.0195 (3)0.0204 (2)0.0159 (2)0.0000.0036 (2)0.000
F40.0330 (6)0.0316 (5)0.0266 (5)0.0000 (4)0.0041 (4)0.0115 (4)
F50.0414 (6)0.0304 (5)0.0276 (5)0.0014 (5)0.0082 (5)0.0105 (4)
F60.0202 (5)0.0419 (5)0.0300 (6)0.0038 (4)0.0009 (4)0.0035 (4)
N10.0196 (6)0.0151 (5)0.0152 (5)0.0003 (5)0.0004 (5)0.0011 (4)
N20.0162 (6)0.0144 (5)0.0168 (6)0.0026 (4)0.0024 (4)0.0011 (4)
C10.0268 (11)0.0110 (8)0.0273 (11)0.0000.0015 (9)0.000
C20.0206 (7)0.0158 (6)0.0197 (7)0.0016 (5)0.0000 (6)0.0027 (5)
C30.0161 (6)0.0135 (6)0.0169 (6)0.0001 (5)0.0011 (5)0.0018 (5)
C40.0208 (9)0.0116 (8)0.0188 (9)0.0000.0011 (8)0.000
C50.0219 (7)0.0146 (6)0.0186 (7)0.0048 (6)0.0030 (6)0.0007 (5)
C60.0186 (7)0.0180 (6)0.0111 (6)0.0010 (5)0.0022 (5)0.0007 (5)
C70.0241 (8)0.0165 (6)0.0202 (7)0.0031 (5)0.0041 (6)0.0024 (5)
C80.0221 (7)0.0226 (7)0.0199 (7)0.0079 (6)0.0005 (6)0.0058 (6)
C90.0168 (7)0.0252 (7)0.0163 (6)0.0033 (6)0.0004 (6)0.0029 (5)
C100.0183 (6)0.0175 (6)0.0145 (6)0.0002 (5)0.0002 (5)0.0004 (5)
C110.0194 (7)0.0156 (6)0.0121 (6)0.0036 (5)0.0014 (5)0.0002 (5)
C120.0190 (7)0.0182 (6)0.0149 (6)0.0012 (5)0.0012 (5)0.0004 (5)
C130.0191 (7)0.0116 (5)0.0253 (7)0.0020 (5)0.0043 (6)0.0021 (5)
C140.0383 (10)0.0226 (8)0.0376 (10)0.0044 (7)0.0151 (8)0.0105 (7)
C150.0298 (9)0.0254 (8)0.0578 (13)0.0078 (7)0.0142 (9)0.0182 (8)
C160.0223 (8)0.0176 (7)0.0376 (9)0.0050 (5)0.0037 (7)0.0022 (6)
C170.0241 (8)0.0192 (7)0.0267 (8)0.0060 (6)0.0051 (6)0.0001 (6)
Geometric parameters (Å, º) top
P1—F11.5951 (10)C5—H5A0.9900
P1—F1i1.5952 (10)C5—H5B0.9900
P1—F31.6051 (9)C6—C71.391 (2)
P1—F3i1.6051 (9)C6—C111.3993 (19)
P1—F21.6067 (10)C7—C81.381 (2)
P1—F2i1.6067 (10)C7—H7A0.9500
P2—F4ii1.6002 (10)C8—C91.413 (2)
P2—F41.6002 (10)C8—H8A0.9500
P2—F51.6046 (10)C9—C101.384 (2)
P2—F5ii1.6046 (10)C9—H9A0.9500
P2—F61.6088 (10)C10—C111.393 (2)
P2—F6ii1.6088 (10)C10—H10A0.9500
N1—C121.3342 (18)C12—H12A0.9500
N1—C61.3981 (19)C13—C171.515 (2)
N1—C51.4707 (17)C13—C141.522 (2)
N2—C121.3307 (18)C13—H13A1.0000
N2—C111.3935 (18)C14—C151.542 (2)
N2—C131.4762 (17)C14—H14A0.9900
C1—C2iii1.3879 (18)C14—H14B0.9900
C1—C21.3879 (18)C15—C161.538 (3)
C1—H1A0.9500C15—H15A0.9900
C2—C31.3942 (19)C15—H15B0.9900
C2—H2A0.9500C16—C171.536 (2)
C3—C41.3894 (17)C16—H16A0.9900
C3—C51.5210 (19)C16—H16B0.9900
C4—C3iii1.3894 (17)C17—H17A0.9900
C4—H4A0.9500C17—H17B0.9900
F1—P1—F1i90.68 (9)H5A—C5—H5B107.6
F1—P1—F389.97 (5)C7—C6—N1131.74 (13)
F1i—P1—F390.05 (5)C7—C6—C11121.94 (14)
F1—P1—F3i90.05 (5)N1—C6—C11106.27 (12)
F1i—P1—F3i89.97 (5)C8—C7—C6116.32 (13)
F3—P1—F3i179.97 (8)C8—C7—H7A121.8
F1—P1—F289.83 (6)C6—C7—H7A121.8
F1i—P1—F2179.47 (7)C7—C8—C9121.84 (14)
F3—P1—F289.83 (5)C7—C8—H8A119.1
F3i—P1—F290.15 (5)C9—C8—H8A119.1
F1—P1—F2i179.47 (7)C10—C9—C8121.82 (14)
F1i—P1—F2i89.83 (6)C10—C9—H9A119.1
F3—P1—F2i90.15 (5)C8—C9—H9A119.1
F3i—P1—F2i89.83 (5)C9—C10—C11116.20 (12)
F2—P1—F2i89.66 (8)C9—C10—H10A121.9
F4ii—P2—F490.62 (8)C11—C10—H10A121.9
F4ii—P2—F589.66 (5)C10—C11—N2131.36 (12)
F4—P2—F5179.64 (6)C10—C11—C6121.87 (13)
F4ii—P2—F5ii179.64 (6)N2—C11—C6106.74 (12)
F4—P2—F5ii89.66 (5)N2—C12—N1110.70 (13)
F5—P2—F5ii90.05 (8)N2—C12—H12A124.6
F4ii—P2—F690.07 (6)N1—C12—H12A124.6
F4—P2—F689.89 (6)N2—C13—C17114.52 (12)
F5—P2—F690.33 (6)N2—C13—C14113.44 (12)
F5ii—P2—F689.72 (6)C17—C13—C14103.97 (13)
F4ii—P2—F6ii89.88 (6)N2—C13—H13A108.2
F4—P2—F6ii90.07 (6)C17—C13—H13A108.2
F5—P2—F6ii89.71 (6)C14—C13—H13A108.2
F5ii—P2—F6ii90.33 (6)C13—C14—C15103.71 (14)
F6—P2—F6ii179.94 (9)C13—C14—H14A111.0
C12—N1—C6108.13 (12)C15—C14—H14A111.0
C12—N1—C5125.04 (13)C13—C14—H14B111.0
C6—N1—C5126.70 (12)C15—C14—H14B111.0
C12—N2—C11108.16 (11)H14A—C14—H14B109.0
C12—N2—C13126.47 (12)C16—C15—C14106.14 (13)
C11—N2—C13125.37 (12)C16—C15—H15A110.5
C2iii—C1—C2119.68 (17)C14—C15—H15A110.5
C2iii—C1—H1A120.2C16—C15—H15B110.5
C2—C1—H1A120.2C14—C15—H15B110.5
C1—C2—C3120.28 (14)H15A—C15—H15B108.7
C1—C2—H2A119.9C17—C16—C15105.39 (13)
C3—C2—H2A119.9C17—C16—H16A110.7
C4—C3—C2119.91 (13)C15—C16—H16A110.7
C4—C3—C5121.97 (12)C17—C16—H16B110.7
C2—C3—C5118.01 (12)C15—C16—H16B110.7
C3iii—C4—C3119.95 (17)H16A—C16—H16B108.8
C3iii—C4—H4A120.0C13—C17—C16101.60 (12)
C3—C4—H4A120.0C13—C17—H17A111.5
N1—C5—C3114.05 (12)C16—C17—H17A111.5
N1—C5—H5A108.7C13—C17—H17B111.5
C3—C5—H5A108.7C16—C17—H17B111.5
N1—C5—H5B108.7H17A—C17—H17B109.3
C3—C5—H5B108.7
C2iii—C1—C2—C30.43 (10)C12—N2—C11—C60.54 (16)
C1—C2—C3—C40.9 (2)C13—N2—C11—C6179.62 (13)
C1—C2—C3—C5175.19 (12)C7—C6—C11—C101.0 (2)
C2—C3—C4—C3iii0.43 (10)N1—C6—C11—C10178.56 (12)
C5—C3—C4—C3iii175.47 (15)C7—C6—C11—N2177.31 (13)
C12—N1—C5—C3108.17 (16)N1—C6—C11—N20.29 (15)
C6—N1—C5—C376.47 (17)C11—N2—C12—N10.60 (17)
C4—C3—C5—N142.77 (18)C13—N2—C12—N1179.57 (13)
C2—C3—C5—N1141.25 (14)C6—N1—C12—N20.41 (16)
C12—N1—C6—C7177.33 (15)C5—N1—C12—N2175.68 (13)
C5—N1—C6—C71.3 (2)C12—N2—C13—C1744.6 (2)
C12—N1—C6—C110.06 (15)C11—N2—C13—C17135.57 (14)
C5—N1—C6—C11175.94 (13)C12—N2—C13—C1474.5 (2)
N1—C6—C7—C8177.12 (14)C11—N2—C13—C14105.29 (17)
C11—C6—C7—C80.2 (2)N2—C13—C14—C15162.32 (14)
C6—C7—C8—C90.5 (2)C17—C13—C14—C1537.29 (18)
C7—C8—C9—C100.5 (2)C13—C14—C15—C1615.5 (2)
C8—C9—C10—C110.3 (2)C14—C15—C16—C1711.4 (2)
C9—C10—C11—N2176.85 (14)N2—C13—C17—C16168.57 (13)
C9—C10—C11—C61.0 (2)C14—C13—C17—C1644.24 (15)
C12—N2—C11—C10178.59 (15)C15—C16—C17—C1333.95 (17)
C13—N2—C11—C101.6 (2)
Symmetry codes: (i) x, y, z+1; (ii) x, y, z+3/2; (iii) x, y, z+1/2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C2—H2A···F3i0.952.443.3814 (18)171
C5—H5B···F4iv0.992.413.2670 (17)145
C8—H8A···F2v0.952.463.3912 (18)167
C12—H12A···F4iv0.952.423.2252 (17)142
C13—H13A···F2vi1.002.513.4090 (18)150
C13—H13A···F3vi1.002.313.2124 (17)149
C9—H9A···Cg1vi0.952.793.6416 (15)149
Symmetry codes: (i) x, y, z+1; (iv) x+1/2, y+1/2, z1/2; (v) x1, y, z; (vi) x1/2, y+1/2, z+1.

Experimental details

Crystal data
Chemical formulaC32H36N42+·2PF6
Mr766.59
Crystal system, space groupOrthorhombic, C2221
Temperature (K)100
a, b, c (Å)7.0699 (1), 20.4852 (3), 22.5416 (3)
V3)3264.66 (8)
Z4
Radiation typeMo Kα
µ (mm1)0.23
Crystal size (mm)0.44 × 0.13 × 0.11
Data collection
DiffractometerBruker SMART APEXII CCD area-detector
diffractometer
Absorption correctionMulti-scan
(SADABS; Bruker, 2009)
Tmin, Tmax0.903, 0.974
No. of measured, independent and
observed [I > 2σ(I)] reflections
19037, 4758, 4407
Rint0.024
(sin θ/λ)max1)0.704
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.032, 0.078, 1.05
No. of reflections4758
No. of parameters228
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.29, 0.24
Absolute structureFlack (1983), 2086 Friedel pairs
Absolute structure parameter0.02 (7)

Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C2—H2A···F3i0.95002.44003.3814 (18)171.00
C5—H5B···F4ii0.99002.41003.2670 (17)145.00
C8—H8A···F2iii0.95002.46003.3912 (18)167.00
C12—H12A···F4ii0.95002.42003.2252 (17)142.00
C13—H13A···F2iv1.00002.51003.4090 (18)150.00
C13—H13A···F3iv1.00002.31003.2124 (17)149.00
C9—H9A···Cg1iv0.952.79003.6416 (15)149.00
Symmetry codes: (i) x, y, z+1; (ii) x+1/2, y+1/2, z1/2; (iii) x1, y, z; (iv) x1/2, y+1/2, z+1.
 

Footnotes

Thomson Reuters ResearcherID: A-3561-2009.

Acknowledgements

RAH and SFN thank Universiti Sains Malaysia (USM) for the short-term grant (304/PKIMIA/6311123) and RU grants (1001/PKIMIA/811157 and 1001/PKIMIA/813023). HKF thanks USM for the Research University Grant No. 1001/PFIZIK/811160.

References

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First citationHaque, R. A., Iqbal, M. A., Hemamalini, M. & Fun, H.-K. (2011). Acta Cryst. E67, o1814–o1815.  Web of Science CSD CrossRef IUCr Journals Google Scholar
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First citationShaharyar, M., Mazumder, A., Salahuddin, Garg, R. & Rishabh, D. P. (2012). Arab. J. Chem.. doi:10.1016/j.arabjc.2011.04.013.  Google Scholar
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