organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890

40-De­­oxy-40(S)-iodo­rapamycin

aFujian Institute of Microbiology, Fuzhou, Fujian 350007, People's Republic of China, and bKey Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao, Shandong 266100, People's Republic of China
*Correspondence e-mail: xlms2003@163.com

(Received 2 April 2012; accepted 18 June 2012; online 4 July 2012)

The title compound, C51H78INO12, contains a 29-membered ring incorporating amide, lactone and ester groups. It contains a total of 15 stereogenic centres. In the crystal, mol­ecules are linked by O—H⋯O hydrogen bonds, forming C(8) chains propagating in [100]. A weak intra­molecular O—H⋯O inter­action also occurs.

Related literature

For general background to rapamycin and its use as an immunosuppressant drug for rejection prevention in organ transplantation, see: Calne et al. (1989[Calne, R. Y., Collier, D. S., Lim, S., Pollard, S. G., Samaan, A., White, D. J. & Thiru, S. (1989). Lancet, 120, 443-444.]). For the anti­cancer properties of rapamycin derivatives, see: Chan (2004[Chan, S. (2004). Br. J. Cancer, 91, 1420-1424.]); Sun et al. (2005[Sun, S. Y., Rosenberg, L. M., Wang, X., Zhou, Z. M., Yue, P., Fu, H. & Khuri, F. R. (2005). Cancer Res. 65, 7052-7058.]); Ayral-Kaloustian et al. (2010[Ayral-Kaloustian, S., Gu, J., Lucas, J., Cinque, M., Gaydos, C., Zask, A., Chaudhary, I., Wang, J., Di, L., Young, M., Ruppen, M., Mansour, T. S., Gibbons, J. J. & Yu, K. (2010). J. Med. Chem. 53, 452-459.]). For the structures of related compounds, see: White & Swindells (1981[White, P. S. & Swindells, D. C. N. (1981). Acta Cryst. A37, C75-C76.]).

[Scheme 1]

Experimental

Crystal data
  • C51H78INO12

  • Mr = 1024.04

  • Orthorhombic, P 21 21 21

  • a = 12.8905 (2) Å

  • b = 12.9820 (3) Å

  • c = 34.6469 (10) Å

  • V = 5798.0 (2) Å3

  • Z = 4

  • Cu Kα radiation

  • μ = 4.77 mm−1

  • T = 293 K

  • 0.45 × 0.42 × 0.37 mm

Data collection
  • Bruker SMART CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 1996[Bruker (1996). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]) Tmin = 0.223, Tmax = 0.271

  • 12528 measured reflections

  • 8657 independent reflections

  • 6937 reflections with I > 2σ(I)

  • Rint = 0.019

Refinement
  • R[F2 > 2σ(F2)] = 0.049

  • wR(F2) = 0.136

  • S = 1.03

  • 8657 reflections

  • 596 parameters

  • H-atom parameters constrained

  • Δρmax = 0.39 e Å−3

  • Δρmin = −0.51 e Å−3

  • Absolute structure: Flack (1983[Flack, H. D. (1983). Acta Cryst. A39, 876-881.]), 3167 Friedel pairs

  • Flack parameter: −0.015 (5)

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
O9—H9⋯O2i 0.82 2.12 2.937 (5) 172
O4—H4⋯O6 0.82 2.45 3.150 (7) 144
Symmetry code: (i) [x+{\script{1\over 2}}, -y+{\script{1\over 2}}, -z+1].

Data collection: SMART (Bruker, 1996)[Bruker (1996). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]; cell refinement: SAINT (Bruker, 1996)[Bruker (1996). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]; data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); software used to prepare material for publication: SHELXTL.

Supporting information


Comment top

Sirolimus is a macrocyclic natural product (also know as rapamycin), has been originally developed as an antifungal agent. However, this application was abandoned when rapamycin become a potent immunosuppressive agent which is used clinically to prevent rejection of transplanted organs (Calne et al., 1989). Recently, there are also many reports about potent anticancer activities of rapamycin derivatives, such as AP-23573, CCI-779 and RAD-001; they are promising agents for treating certain cancers (Chan et al., 2004; Sun et al., 2005). Herein, we present the synthesis and structure of a rapamycin derivative, [40-Deoxy-40(S)-iodo]-rapamycin.

The crystal structure of the title compound is given in Fig. 1. The title compound has macrocyclic structure which contains an amide C33—N1, a lactone C6—O1, an oxygen bridge between C27 and C31 and an additional bond between N1 and C5 to form a piperidine unit. In the crystal, the adjacent molecules are stabilized by classical intermolecular O—H···O hydrogen bonding, with the distance of 2.937 (5) Å (Table 1).

Related literature top

For general background to rapamycin and its use as an immunosuppressant drug for rejection prevention in organ transplantation, see: Calne et al. (1989). For the anticancer properties of rapamycin derivatives, see: Chan (2004); Sun et al. (2005); Ayral-Kaloustian et al. (2010). For the structures of related compounds, see: White & Swindells (1981).

Experimental top

Trifluoromethanesulfonic anhydride (21.4 mmol, 3.6 ml) was added gradually to the mixture solution of rapamycin (11.0 mmol, 10 g) and 2,6-Lutidine (65.0 mmol, 7.6 ml) in dry dichloromethane (60 ml). The reaction mixture was stirred at 273 K for 1 h, then the mixture was quenched with a saturated NaHCO3 solution (100 ml) and diluted with dichloromethane. The organic phase was evaporated under reduced pressure to get the crude mixture which dissolved in the mixture of acetone and purified water (50/1), the sodium iodide (55.0 mmol, 9.1 g) was added to the reaction mixture. The reaction mixture was stirred at room temperature for 6 h. The mixture was concentrated under reduced pressure. The crude mixture was purified by flash column chromatography (silica, 1%-10% EtOAc/hexanes) to furnish the product. Colorless blocks of the title compound were obtained in ether solution after 10 day by slow evaporation at room temperature.

Refinement top

All H-atoms were positioned geometrically and refined using a riding model, with C—H = 0.96 Å (CH3), 0.97 Å (CH2), 0.98 Å (CH), and Uiso(H) =1.2Ueq(C).

Structure description top

Sirolimus is a macrocyclic natural product (also know as rapamycin), has been originally developed as an antifungal agent. However, this application was abandoned when rapamycin become a potent immunosuppressive agent which is used clinically to prevent rejection of transplanted organs (Calne et al., 1989). Recently, there are also many reports about potent anticancer activities of rapamycin derivatives, such as AP-23573, CCI-779 and RAD-001; they are promising agents for treating certain cancers (Chan et al., 2004; Sun et al., 2005). Herein, we present the synthesis and structure of a rapamycin derivative, [40-Deoxy-40(S)-iodo]-rapamycin.

The crystal structure of the title compound is given in Fig. 1. The title compound has macrocyclic structure which contains an amide C33—N1, a lactone C6—O1, an oxygen bridge between C27 and C31 and an additional bond between N1 and C5 to form a piperidine unit. In the crystal, the adjacent molecules are stabilized by classical intermolecular O—H···O hydrogen bonding, with the distance of 2.937 (5) Å (Table 1).

For general background to rapamycin and its use as an immunosuppressant drug for rejection prevention in organ transplantation, see: Calne et al. (1989). For the anticancer properties of rapamycin derivatives, see: Chan (2004); Sun et al. (2005); Ayral-Kaloustian et al. (2010). For the structures of related compounds, see: White & Swindells (1981).

Computing details top

Data collection: SMART (Bruker, 1996); cell refinement: SAINT (Bruker, 1996); data reduction: SAINT (Bruker, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. The structure of the title compound, showing 30% probability displacement ellipsoids.
40-Deoxy-40(S)-iodorapamycin top
Crystal data top
C51H78INO12F(000) = 2160
Mr = 1024.04Dx = 1.173 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 4960 reflections
a = 12.8905 (2) Åθ = 3.4–70.6°
b = 12.9820 (3) ŵ = 4.77 mm1
c = 34.6469 (10) ÅT = 293 K
V = 5798.0 (2) Å3Block, colorless
Z = 40.45 × 0.42 × 0.37 mm
Data collection top
Bruker SMART CCD
diffractometer
8657 independent reflections
Radiation source: fine-focus sealed tube6937 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
phi and ω scansθmax = 65.0°, θmin = 3.6°
Absorption correction: multi-scan
(SADABS; Bruker, 1996)
h = 715
Tmin = 0.223, Tmax = 0.271k = 1512
12528 measured reflectionsl = 4014
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.136 w = 1/[σ2(Fo2) + (0.0665P)2 + 2.3571P]
where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
8657 reflectionsΔρmax = 0.39 e Å3
596 parametersΔρmin = 0.50 e Å3
0 restraintsAbsolute structure: Flack (1983), 3167 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.015 (5)
Crystal data top
C51H78INO12V = 5798.0 (2) Å3
Mr = 1024.04Z = 4
Orthorhombic, P212121Cu Kα radiation
a = 12.8905 (2) ŵ = 4.77 mm1
b = 12.9820 (3) ÅT = 293 K
c = 34.6469 (10) Å0.45 × 0.42 × 0.37 mm
Data collection top
Bruker SMART CCD
diffractometer
8657 independent reflections
Absorption correction: multi-scan
(SADABS; Bruker, 1996)
6937 reflections with I > 2σ(I)
Tmin = 0.223, Tmax = 0.271Rint = 0.019
12528 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.136Δρmax = 0.39 e Å3
S = 1.03Δρmin = 0.50 e Å3
8657 reflectionsAbsolute structure: Flack (1983), 3167 Friedel pairs
596 parametersAbsolute structure parameter: 0.015 (5)
0 restraints
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
I10.17545 (3)0.09666 (3)0.736031 (19)0.1251 (2)
N10.3544 (3)0.1997 (4)0.50916 (12)0.0826 (13)
O10.2773 (3)0.2325 (3)0.58035 (9)0.0737 (9)
O20.1628 (3)0.1042 (3)0.57611 (11)0.0877 (10)
O30.4124 (3)0.1311 (3)0.64312 (12)0.0934 (11)
O40.2861 (3)0.2151 (3)0.78297 (11)0.1011 (13)
H40.30280.19020.80380.121*
O50.2631 (6)0.3706 (5)0.84008 (15)0.151 (2)
O60.3945 (5)0.2244 (5)0.86438 (15)0.139 (2)
O70.7637 (3)0.5270 (4)0.57078 (10)0.0938 (12)
O80.5009 (3)0.4141 (3)0.52099 (8)0.0763 (9)
O90.4998 (3)0.5105 (4)0.46458 (10)0.0905 (11)
H90.54330.47330.45440.109*
O100.4361 (4)0.3286 (5)0.43962 (11)0.1252 (19)
O110.2345 (3)0.3083 (4)0.48592 (13)0.1094 (15)
O120.0072 (4)0.1952 (4)0.78801 (13)0.1137 (15)
C10.4615 (5)0.1810 (6)0.5215 (2)0.0981 (19)
H1A0.46990.20350.54800.118*
H1B0.50830.22130.50550.118*
C20.4899 (6)0.0684 (7)0.5184 (3)0.125 (3)
H2A0.49320.04910.49140.150*
H2B0.55820.05780.52950.150*
C30.4138 (6)0.0006 (7)0.5385 (2)0.116 (2)
H3A0.41250.01690.56580.139*
H3B0.43400.07090.53560.139*
C40.3065 (5)0.0172 (6)0.52117 (17)0.0990 (19)
H4A0.30660.00570.49450.119*
H4B0.25630.02410.53520.119*
C50.2745 (5)0.1295 (5)0.52284 (15)0.0855 (17)
H50.21620.13670.50490.103*
C60.2313 (4)0.1536 (5)0.56263 (14)0.0719 (13)
C70.2421 (4)0.2508 (4)0.62012 (12)0.0667 (12)
H70.22650.18410.63200.080*
C80.3355 (4)0.2973 (4)0.64068 (13)0.0660 (11)
H8A0.37120.34330.62310.079*
H8B0.31140.33800.66240.079*
C90.4104 (4)0.2181 (4)0.65501 (13)0.0620 (11)
C100.4825 (3)0.2512 (4)0.68782 (12)0.0600 (10)
H100.50610.32180.68300.072*
C110.4188 (4)0.2498 (4)0.72405 (12)0.0641 (11)
H110.39110.18640.73110.077*
C120.3979 (4)0.3274 (4)0.74680 (13)0.0695 (12)
C130.3230 (6)0.3171 (4)0.78058 (15)0.0904 (16)
H130.26260.35920.77380.108*
C140.3581 (7)0.3555 (6)0.81942 (18)0.108 (2)
H140.39460.42130.81650.129*
C150.4280 (6)0.2775 (5)0.83826 (17)0.0953 (19)
C160.5400 (6)0.2697 (5)0.82599 (15)0.0909 (18)
H160.54710.30490.80110.109*
C170.6113 (6)0.3244 (5)0.85514 (15)0.096 (2)
H17A0.57970.38960.86220.115*
H17B0.61510.28270.87830.115*
C180.7203 (6)0.3450 (5)0.84130 (15)0.097 (2)
H180.75310.27950.83440.116*
C190.7174 (5)0.4132 (5)0.80634 (14)0.0845 (16)
H190.69190.47970.80960.101*
C200.7481 (5)0.3865 (4)0.77130 (14)0.0780 (14)
H200.78430.32490.76880.094*
C210.7298 (4)0.4451 (4)0.73668 (13)0.0698 (12)
H210.70160.51070.73940.084*
C220.7503 (4)0.4126 (4)0.70110 (13)0.0702 (12)
H220.78750.35160.69870.084*
C230.7204 (4)0.4627 (4)0.66636 (12)0.0647 (11)
H230.68610.52520.66930.078*
C240.7351 (4)0.4317 (4)0.63013 (13)0.0697 (13)
C250.6875 (4)0.4936 (4)0.59765 (12)0.0714 (12)
H250.65200.55380.60850.086*
C260.6106 (4)0.4303 (4)0.57469 (13)0.0724 (13)
H26A0.64790.37580.56150.087*
H26B0.56240.39810.59250.087*
C270.5499 (4)0.4905 (5)0.54543 (13)0.0740 (13)
H270.59790.53180.52990.089*
C280.4677 (5)0.5601 (5)0.56233 (16)0.0927 (18)
H28A0.50060.61540.57660.111*
H28B0.42490.52110.58010.111*
C290.3997 (5)0.6056 (6)0.53063 (18)0.1013 (19)
H29A0.34440.64570.54230.122*
H29B0.44090.65160.51480.122*
C300.3530 (4)0.5225 (6)0.50547 (16)0.0919 (18)
H300.30860.47980.52190.110*
C310.4411 (4)0.4533 (5)0.49015 (14)0.0791 (15)
C320.4047 (4)0.3531 (6)0.47105 (15)0.0860 (17)
C330.3252 (5)0.2851 (6)0.49107 (14)0.0833 (15)
C340.1586 (6)0.4208 (6)0.60107 (19)0.111 (2)
H34A0.21110.45900.61460.166*
H34B0.09450.45830.60180.166*
H34C0.17960.41090.57470.166*
C350.1438 (4)0.3156 (5)0.62051 (15)0.0783 (14)
H350.09180.27820.60540.094*
C360.1001 (4)0.3279 (5)0.66127 (15)0.0799 (14)
H36A0.03130.35770.65920.096*
H36B0.14310.37710.67500.096*
C370.0920 (3)0.2299 (4)0.68603 (14)0.0687 (12)
H370.16230.20270.68950.082*
C380.0494 (4)0.2552 (4)0.72553 (15)0.0774 (14)
H38A0.09220.30790.73730.093*
H38B0.02020.28280.72280.093*
C390.0461 (4)0.1630 (5)0.75147 (17)0.0886 (17)
H390.11810.14130.75550.106*
C400.0111 (3)0.0711 (4)0.7345 (2)0.0872 (16)
H400.00480.01020.75010.105*
C410.0243 (4)0.0518 (4)0.6939 (2)0.0920 (18)
H41A0.02150.00130.68230.110*
H41B0.09320.02200.69480.110*
C420.0274 (4)0.1467 (5)0.66795 (18)0.0855 (16)
H42A0.05650.12820.64310.103*
H42B0.04250.17190.66380.103*
C430.0194 (8)0.1225 (9)0.8182 (2)0.165 (4)
H43A0.03040.06810.81510.248*
H43B0.00850.15590.84260.248*
H43C0.08820.09430.81740.248*
C440.5762 (4)0.1815 (5)0.69079 (19)0.0928 (17)
H44A0.61980.20430.71160.139*
H44B0.61430.18360.66700.139*
H44C0.55380.11210.69570.139*
C450.4368 (5)0.4352 (4)0.74032 (17)0.0900 (17)
H45A0.50720.44040.74910.135*
H45B0.39420.48280.75440.135*
H45C0.43380.45110.71330.135*
C460.2730 (11)0.4307 (10)0.8733 (3)0.199 (6)
H46A0.33610.41300.88640.298*
H46B0.21500.41820.89000.298*
H46C0.27450.50220.86620.298*
C470.5713 (8)0.1590 (6)0.8204 (2)0.138 (3)
H47A0.63350.14530.83470.206*
H47B0.58350.14630.79350.206*
H47C0.51680.11470.82940.206*
C480.7833 (7)0.3960 (8)0.87399 (18)0.143 (4)
H48A0.75330.46160.88020.215*
H48B0.85370.40570.86570.215*
H48C0.78220.35250.89640.215*
C490.7960 (5)0.3374 (6)0.61917 (17)0.104 (2)
H49A0.84520.35490.59940.156*
H49B0.74960.28550.60960.156*
H49C0.83200.31170.64140.156*
C500.8279 (7)0.6050 (8)0.5855 (2)0.141 (3)
H50A0.78670.66440.59160.211*
H50B0.87890.62320.56650.211*
H50C0.86200.58080.60840.211*
C510.2858 (6)0.5651 (8)0.4733 (2)0.127 (3)
H51A0.22560.59750.48420.190*
H51B0.26470.50990.45660.190*
H51C0.32470.61480.45870.190*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
I10.05118 (17)0.0957 (2)0.2285 (6)0.00536 (19)0.0178 (3)0.0032 (3)
N10.066 (2)0.122 (4)0.060 (2)0.004 (3)0.011 (2)0.011 (3)
O10.0637 (17)0.101 (2)0.0562 (16)0.0071 (19)0.0120 (15)0.0006 (18)
O20.072 (2)0.106 (3)0.086 (2)0.009 (2)0.0046 (19)0.007 (2)
O30.098 (3)0.081 (2)0.101 (3)0.013 (2)0.031 (2)0.027 (2)
O40.109 (3)0.109 (3)0.085 (2)0.041 (3)0.013 (2)0.006 (2)
O50.189 (6)0.161 (5)0.103 (3)0.020 (4)0.064 (4)0.007 (3)
O60.152 (5)0.147 (4)0.118 (3)0.047 (4)0.013 (3)0.054 (3)
O70.088 (2)0.131 (3)0.0626 (19)0.027 (3)0.0027 (19)0.010 (2)
O80.0702 (18)0.100 (2)0.0589 (17)0.001 (2)0.0121 (15)0.0132 (18)
O90.081 (2)0.120 (3)0.070 (2)0.001 (2)0.0014 (19)0.002 (2)
O100.126 (4)0.186 (5)0.064 (2)0.062 (4)0.021 (2)0.032 (3)
O110.067 (2)0.145 (4)0.116 (3)0.011 (3)0.021 (2)0.030 (3)
O120.108 (3)0.134 (4)0.099 (3)0.003 (3)0.013 (3)0.025 (3)
C10.071 (3)0.116 (5)0.107 (4)0.000 (4)0.011 (3)0.019 (4)
C20.096 (5)0.142 (7)0.136 (6)0.012 (5)0.001 (5)0.021 (5)
C30.112 (5)0.117 (5)0.118 (5)0.012 (5)0.003 (5)0.011 (5)
C40.103 (5)0.118 (5)0.076 (3)0.016 (4)0.001 (3)0.028 (4)
C50.073 (3)0.118 (5)0.065 (3)0.016 (3)0.020 (3)0.003 (3)
C60.057 (3)0.096 (4)0.063 (3)0.003 (3)0.015 (2)0.000 (3)
C70.059 (2)0.087 (3)0.054 (2)0.004 (2)0.007 (2)0.002 (2)
C80.065 (3)0.079 (3)0.054 (2)0.002 (3)0.005 (2)0.004 (2)
C90.061 (2)0.068 (3)0.057 (2)0.005 (2)0.001 (2)0.001 (2)
C100.057 (2)0.065 (3)0.058 (2)0.000 (2)0.007 (2)0.001 (2)
C110.073 (3)0.060 (2)0.058 (2)0.006 (2)0.008 (2)0.007 (2)
C120.080 (3)0.067 (3)0.061 (3)0.006 (2)0.006 (2)0.006 (2)
C130.112 (4)0.085 (3)0.075 (3)0.002 (4)0.021 (3)0.002 (3)
C140.152 (7)0.093 (4)0.078 (4)0.014 (4)0.030 (4)0.001 (4)
C150.128 (5)0.083 (4)0.074 (3)0.040 (4)0.005 (4)0.003 (3)
C160.136 (5)0.080 (3)0.057 (3)0.039 (4)0.001 (3)0.001 (3)
C170.143 (6)0.090 (4)0.055 (3)0.053 (4)0.005 (3)0.002 (3)
C180.134 (5)0.095 (4)0.062 (3)0.035 (4)0.021 (3)0.005 (3)
C190.113 (4)0.075 (3)0.065 (3)0.033 (3)0.006 (3)0.000 (3)
C200.102 (4)0.069 (3)0.063 (3)0.023 (3)0.020 (3)0.001 (2)
C210.079 (3)0.070 (3)0.061 (3)0.023 (2)0.003 (3)0.002 (2)
C220.075 (3)0.072 (3)0.064 (3)0.006 (3)0.013 (2)0.005 (2)
C230.061 (2)0.074 (3)0.059 (3)0.003 (2)0.001 (2)0.008 (2)
C240.059 (2)0.092 (4)0.058 (2)0.007 (2)0.006 (2)0.014 (2)
C250.068 (3)0.095 (3)0.051 (2)0.002 (3)0.005 (2)0.014 (2)
C260.067 (3)0.094 (4)0.056 (2)0.001 (3)0.006 (2)0.010 (3)
C270.070 (3)0.100 (4)0.052 (2)0.005 (3)0.010 (2)0.013 (3)
C280.087 (4)0.117 (5)0.074 (3)0.019 (4)0.009 (3)0.015 (3)
C290.094 (4)0.124 (5)0.085 (4)0.025 (4)0.005 (3)0.008 (4)
C300.072 (3)0.137 (5)0.067 (3)0.015 (4)0.009 (3)0.001 (4)
C310.067 (3)0.122 (4)0.049 (2)0.004 (3)0.003 (2)0.009 (3)
C320.072 (3)0.129 (5)0.057 (3)0.010 (3)0.010 (3)0.002 (3)
C330.067 (3)0.130 (5)0.053 (3)0.007 (4)0.006 (3)0.007 (3)
C340.108 (5)0.117 (5)0.108 (4)0.031 (4)0.002 (4)0.037 (4)
C350.066 (3)0.097 (4)0.072 (3)0.012 (3)0.006 (2)0.009 (3)
C360.066 (3)0.090 (4)0.084 (3)0.009 (3)0.000 (3)0.008 (3)
C370.046 (2)0.079 (3)0.081 (3)0.007 (2)0.003 (2)0.010 (3)
C380.056 (2)0.091 (3)0.085 (3)0.009 (2)0.001 (2)0.008 (3)
C390.054 (2)0.109 (4)0.103 (4)0.008 (3)0.006 (3)0.023 (3)
C400.047 (2)0.081 (3)0.134 (5)0.001 (2)0.005 (3)0.026 (4)
C410.060 (3)0.073 (3)0.144 (5)0.010 (3)0.004 (3)0.004 (4)
C420.062 (3)0.090 (4)0.105 (4)0.011 (3)0.001 (3)0.001 (3)
C430.155 (8)0.218 (11)0.123 (6)0.004 (8)0.007 (6)0.065 (7)
C440.072 (3)0.099 (4)0.107 (4)0.018 (3)0.022 (3)0.001 (4)
C450.117 (4)0.064 (3)0.089 (3)0.000 (3)0.032 (4)0.001 (3)
C460.276 (15)0.199 (11)0.120 (6)0.029 (11)0.064 (8)0.040 (7)
C470.193 (9)0.101 (5)0.119 (5)0.032 (6)0.007 (6)0.022 (5)
C480.168 (7)0.186 (8)0.076 (4)0.081 (7)0.036 (4)0.014 (5)
C490.102 (5)0.128 (5)0.082 (4)0.041 (4)0.013 (3)0.019 (4)
C500.136 (6)0.173 (8)0.113 (5)0.071 (7)0.009 (5)0.011 (6)
C510.101 (5)0.177 (8)0.103 (4)0.029 (5)0.028 (4)0.011 (5)
Geometric parameters (Å, º) top
I1—C402.145 (5)C23—C241.332 (6)
N1—C331.328 (8)C23—H230.9300
N1—C51.455 (7)C24—C491.502 (8)
N1—C11.466 (7)C24—C251.513 (7)
O1—C61.333 (6)C25—C261.513 (7)
O1—C71.470 (6)C25—H250.9800
O2—C61.187 (6)C26—C271.500 (7)
O3—C91.203 (6)C26—H26A0.9700
O4—C131.410 (7)C26—H26B0.9700
O4—H40.8200C27—C281.511 (8)
O5—C461.395 (10)C27—H270.9800
O5—C141.432 (9)C28—C291.524 (8)
O6—C151.217 (7)C28—H28A0.9700
O7—C501.403 (8)C28—H28B0.9700
O7—C251.422 (6)C29—C301.511 (9)
O8—C311.413 (6)C29—H29A0.9700
O8—C271.450 (6)C29—H29B0.9700
O9—C311.382 (7)C30—C511.516 (8)
O9—H90.8200C30—C311.542 (8)
O10—C321.205 (7)C30—H300.9800
O11—C331.221 (7)C31—C321.533 (9)
O12—C431.417 (10)C32—C331.520 (8)
O12—C391.424 (7)C34—C351.534 (9)
C1—C21.512 (11)C34—H34A0.9600
C1—H1A0.9700C34—H34B0.9600
C1—H1B0.9700C34—H34C0.9600
C2—C31.491 (11)C35—C361.529 (7)
C2—H2A0.9700C35—H350.9800
C2—H2B0.9700C36—C371.537 (7)
C3—C41.523 (10)C36—H36A0.9700
C3—H3A0.9700C36—H36B0.9700
C3—H3B0.9700C37—C421.501 (8)
C4—C51.516 (9)C37—C381.511 (7)
C4—H4A0.9700C37—H370.9800
C4—H4B0.9700C38—C391.497 (8)
C5—C61.519 (8)C38—H38A0.9700
C5—H50.9800C38—H38B0.9700
C7—C351.520 (7)C39—C401.521 (8)
C7—C81.524 (7)C39—H390.9800
C7—H70.9800C40—C411.498 (9)
C8—C91.495 (7)C40—H400.9800
C8—H8A0.9700C41—C421.526 (8)
C8—H8B0.9700C41—H41A0.9700
C9—C101.530 (6)C41—H41B0.9700
C10—C111.500 (6)C42—H42A0.9700
C10—C441.513 (7)C42—H42B0.9700
C10—H100.9800C43—H43A0.9600
C11—C121.307 (6)C43—H43B0.9600
C11—H110.9300C43—H43C0.9600
C12—C451.503 (7)C44—H44A0.9600
C12—C131.523 (7)C44—H44B0.9600
C13—C141.505 (9)C44—H44C0.9600
C13—H130.9800C45—H45A0.9600
C14—C151.505 (10)C45—H45B0.9600
C14—H140.9800C45—H45C0.9600
C15—C161.509 (10)C46—H46A0.9600
C16—C471.506 (10)C46—H46B0.9600
C16—C171.539 (8)C46—H46C0.9600
C16—H160.9800C47—H47A0.9600
C17—C181.509 (9)C47—H47B0.9600
C17—H17A0.9700C47—H47C0.9600
C17—H17B0.9700C48—H48A0.9600
C18—C191.501 (8)C48—H48B0.9600
C18—C481.543 (8)C48—H48C0.9600
C18—H180.9800C49—H49A0.9600
C19—C201.323 (7)C49—H49B0.9600
C19—H190.9300C49—H49C0.9600
C20—C211.440 (7)C50—H50A0.9600
C20—H200.9300C50—H50B0.9600
C21—C221.329 (7)C50—H50C0.9600
C21—H210.9300C51—H51A0.9600
C22—C231.422 (6)C51—H51B0.9600
C22—H220.9300C51—H51C0.9600
C33—N1—C5118.5 (5)C27—C28—C29110.9 (4)
C33—N1—C1122.9 (5)C27—C28—H28A109.5
C5—N1—C1117.9 (5)C29—C28—H28A109.5
C6—O1—C7114.8 (4)C27—C28—H28B109.5
C13—O4—H4109.5C29—C28—H28B109.5
C46—O5—C14114.2 (8)H28A—C28—H28B108.1
C50—O7—C25113.0 (4)C30—C29—C28111.6 (6)
C31—O8—C27115.6 (4)C30—C29—H29A109.3
C31—O9—H9109.5C28—C29—H29A109.3
C43—O12—C39115.0 (7)C30—C29—H29B109.3
N1—C1—C2111.6 (6)C28—C29—H29B109.3
N1—C1—H1A109.3H29A—C29—H29B108.0
C2—C1—H1A109.3C29—C30—C51113.0 (7)
N1—C1—H1B109.3C29—C30—C31108.8 (5)
C2—C1—H1B109.3C51—C30—C31112.3 (5)
H1A—C1—H1B108.0C29—C30—H30107.5
C3—C2—C1112.3 (7)C51—C30—H30107.5
C3—C2—H2A109.2C31—C30—H30107.5
C1—C2—H2A109.2O9—C31—O8112.3 (4)
C3—C2—H2B109.2O9—C31—C32110.3 (4)
C1—C2—H2B109.2O8—C31—C32100.8 (5)
H2A—C2—H2B107.9O9—C31—C30108.1 (5)
C2—C3—C4109.3 (6)O8—C31—C30110.6 (4)
C2—C3—H3A109.8C32—C31—C30114.7 (5)
C4—C3—H3A109.8O10—C32—C33119.1 (6)
C2—C3—H3B109.8O10—C32—C31120.8 (6)
C4—C3—H3B109.8C33—C32—C31120.2 (5)
H3A—C3—H3B108.3O11—C33—N1123.1 (6)
C5—C4—C3111.6 (6)O11—C33—C32115.9 (6)
C5—C4—H4A109.3N1—C33—C32120.6 (5)
C3—C4—H4A109.3C35—C34—H34A109.5
C5—C4—H4B109.3C35—C34—H34B109.5
C3—C4—H4B109.3H34A—C34—H34B109.5
H4A—C4—H4B108.0C35—C34—H34C109.5
N1—C5—C4113.4 (5)H34A—C34—H34C109.5
N1—C5—C6115.2 (5)H34B—C34—H34C109.5
C4—C5—C6109.4 (5)C7—C35—C36111.9 (4)
N1—C5—H5106.0C7—C35—C34112.7 (5)
C4—C5—H5106.0C36—C35—C34111.0 (5)
C6—C5—H5106.0C7—C35—H35107.0
O2—C6—O1124.4 (5)C36—C35—H35107.0
O2—C6—C5121.2 (5)C34—C35—H35107.0
O1—C6—C5114.5 (5)C35—C36—C37117.0 (5)
O1—C7—C35110.8 (4)C35—C36—H36A108.0
O1—C7—C8105.0 (4)C37—C36—H36A108.0
C35—C7—C8115.8 (4)C35—C36—H36B108.0
O1—C7—H7108.4C37—C36—H36B108.0
C35—C7—H7108.4H36A—C36—H36B107.3
C8—C7—H7108.4C42—C37—C38109.4 (4)
C9—C8—C7113.2 (4)C42—C37—C36113.6 (4)
C9—C8—H8A108.9C38—C37—C36110.5 (4)
C7—C8—H8A108.9C42—C37—H37107.7
C9—C8—H8B108.9C38—C37—H37107.7
C7—C8—H8B108.9C36—C37—H37107.7
H8A—C8—H8B107.8C39—C38—C37112.4 (5)
O3—C9—C8123.1 (4)C39—C38—H38A109.1
O3—C9—C10120.4 (4)C37—C38—H38A109.1
C8—C9—C10116.5 (4)C39—C38—H38B109.1
C11—C10—C44111.9 (4)C37—C38—H38B109.1
C11—C10—C9106.6 (4)H38A—C38—H38B107.9
C44—C10—C9111.6 (4)O12—C39—C38108.0 (5)
C11—C10—H10108.9O12—C39—C40113.8 (5)
C44—C10—H10108.9C38—C39—C40114.1 (5)
C9—C10—H10108.9O12—C39—H39106.8
C12—C11—C10127.4 (4)C38—C39—H39106.8
C12—C11—H11116.3C40—C39—H39106.8
C10—C11—H11116.3C41—C40—C39110.3 (5)
C11—C12—C45124.0 (4)C41—C40—I1110.5 (4)
C11—C12—C13121.8 (5)C39—C40—I1110.4 (4)
C45—C12—C13114.1 (5)C41—C40—H40108.5
O4—C13—C14111.1 (5)C39—C40—H40108.5
O4—C13—C12110.0 (4)I1—C40—H40108.5
C14—C13—C12117.8 (6)C40—C41—C42115.2 (5)
O4—C13—H13105.6C40—C41—H41A108.5
C14—C13—H13105.6C42—C41—H41A108.5
C12—C13—H13105.6C40—C41—H41B108.5
O5—C14—C13103.6 (6)C42—C41—H41B108.5
O5—C14—C15112.8 (5)H41A—C41—H41B107.5
C13—C14—C15110.1 (6)C37—C42—C41110.5 (5)
O5—C14—H14110.0C37—C42—H42A109.6
C13—C14—H14110.0C41—C42—H42A109.6
C15—C14—H14110.0C37—C42—H42B109.6
O6—C15—C14119.5 (7)C41—C42—H42B109.6
O6—C15—C16120.7 (7)H42A—C42—H42B108.1
C14—C15—C16119.7 (5)O12—C43—H43A109.5
C47—C16—C15110.9 (6)O12—C43—H43B109.5
C47—C16—C17111.4 (6)H43A—C43—H43B109.5
C15—C16—C17110.9 (5)O12—C43—H43C109.5
C47—C16—H16107.8H43A—C43—H43C109.5
C15—C16—H16107.8H43B—C43—H43C109.5
C17—C16—H16107.8C10—C44—H44A109.5
C18—C17—C16115.4 (5)C10—C44—H44B109.5
C18—C17—H17A108.4H44A—C44—H44B109.5
C16—C17—H17A108.4C10—C44—H44C109.5
C18—C17—H17B108.4H44A—C44—H44C109.5
C16—C17—H17B108.4H44B—C44—H44C109.5
H17A—C17—H17B107.5C12—C45—H45A109.5
C19—C18—C17109.7 (6)C12—C45—H45B109.5
C19—C18—C48110.6 (5)H45A—C45—H45B109.5
C17—C18—C48109.5 (5)C12—C45—H45C109.5
C19—C18—H18109.0H45A—C45—H45C109.5
C17—C18—H18109.0H45B—C45—H45C109.5
C48—C18—H18109.0O5—C46—H46A109.5
C20—C19—C18125.3 (6)O5—C46—H46B109.5
C20—C19—H19117.3H46A—C46—H46B109.5
C18—C19—H19117.3O5—C46—H46C109.5
C19—C20—C21125.2 (6)H46A—C46—H46C109.5
C19—C20—H20117.4H46B—C46—H46C109.5
C21—C20—H20117.4C16—C47—H47A109.5
C22—C21—C20124.9 (5)C16—C47—H47B109.5
C22—C21—H21117.6H47A—C47—H47B109.5
C20—C21—H21117.6C16—C47—H47C109.5
C21—C22—C23125.9 (5)H47A—C47—H47C109.5
C21—C22—H22117.1H47B—C47—H47C109.5
C23—C22—H22117.1C18—C48—H48A109.5
C24—C23—C22128.4 (5)C18—C48—H48B109.5
C24—C23—H23115.8H48A—C48—H48B109.5
C22—C23—H23115.8C18—C48—H48C109.5
C23—C24—C49124.0 (5)H48A—C48—H48C109.5
C23—C24—C25118.8 (4)H48B—C48—H48C109.5
C49—C24—C25117.2 (4)C24—C49—H49A109.5
O7—C25—C26105.9 (4)C24—C49—H49B109.5
O7—C25—C24111.6 (4)H49A—C49—H49B109.5
C26—C25—C24111.6 (5)C24—C49—H49C109.5
O7—C25—H25109.2H49A—C49—H49C109.5
C26—C25—H25109.2H49B—C49—H49C109.5
C24—C25—H25109.2O7—C50—H50A109.5
C27—C26—C25114.4 (5)O7—C50—H50B109.5
C27—C26—H26A108.7H50A—C50—H50B109.5
C25—C26—H26A108.7O7—C50—H50C109.5
C27—C26—H26B108.7H50A—C50—H50C109.5
C25—C26—H26B108.7H50B—C50—H50C109.5
H26A—C26—H26B107.6C30—C51—H51A109.5
O8—C27—C26105.4 (4)C30—C51—H51B109.5
O8—C27—C28109.3 (4)H51A—C51—H51B109.5
C26—C27—C28114.6 (4)C30—C51—H51C109.5
O8—C27—H27109.2H51A—C51—H51C109.5
C26—C27—H27109.2H51B—C51—H51C109.5
C28—C27—H27109.2
C33—N1—C1—C2145.5 (6)C50—O7—C25—C2471.7 (7)
C5—N1—C1—C244.6 (8)C23—C24—C25—O7123.2 (5)
N1—C1—C2—C352.4 (9)C49—C24—C25—O757.3 (6)
C1—C2—C3—C458.8 (9)C23—C24—C25—C26118.5 (5)
C2—C3—C4—C555.9 (8)C49—C24—C25—C2661.0 (6)
C33—N1—C5—C4146.4 (5)O7—C25—C26—C2766.1 (5)
C1—N1—C5—C443.2 (7)C24—C25—C26—C27172.2 (4)
C33—N1—C5—C686.4 (6)C31—O8—C27—C26178.2 (4)
C1—N1—C5—C684.0 (7)C31—O8—C27—C2858.2 (6)
C3—C4—C5—N147.9 (7)C25—C26—C27—O8166.8 (4)
C3—C4—C5—C682.2 (6)C25—C26—C27—C2873.1 (6)
C7—O1—C6—O24.3 (7)O8—C27—C28—C2953.6 (7)
C7—O1—C6—C5175.0 (4)C26—C27—C28—C29171.5 (5)
N1—C5—C6—O2176.9 (5)C27—C28—C29—C3054.7 (7)
C4—C5—C6—O254.0 (7)C28—C29—C30—C51179.3 (6)
N1—C5—C6—O13.8 (7)C28—C29—C30—C3153.8 (7)
C4—C5—C6—O1125.4 (5)C27—O8—C31—O961.6 (6)
C6—O1—C7—C3584.0 (5)C27—O8—C31—C32179.0 (4)
C6—O1—C7—C8150.4 (4)C27—O8—C31—C3059.3 (6)
O1—C7—C8—C983.5 (5)C29—C30—C31—O968.4 (6)
C35—C7—C8—C9154.1 (4)C51—C30—C31—O957.5 (7)
C7—C8—C9—O318.6 (7)C29—C30—C31—O855.0 (7)
C7—C8—C9—C10158.0 (4)C51—C30—C31—O8179.1 (6)
O3—C9—C10—C1199.9 (5)C29—C30—C31—C32168.1 (5)
C8—C9—C10—C1176.9 (5)C51—C30—C31—C3266.0 (8)
O3—C9—C10—C4422.5 (7)O9—C31—C32—O107.4 (8)
C8—C9—C10—C44160.7 (5)O8—C31—C32—O10111.5 (6)
C44—C10—C11—C12119.1 (6)C30—C31—C32—O10129.7 (6)
C9—C10—C11—C12118.7 (5)O9—C31—C32—C33170.4 (5)
C10—C11—C12—C450.7 (9)O8—C31—C32—C3370.7 (6)
C10—C11—C12—C13173.7 (5)C30—C31—C32—C3348.1 (7)
C11—C12—C13—O41.6 (8)C5—N1—C33—O111.2 (8)
C45—C12—C13—O4176.5 (5)C1—N1—C33—O11168.6 (6)
C11—C12—C13—C14130.4 (6)C5—N1—C33—C32171.0 (5)
C45—C12—C13—C1454.8 (8)C1—N1—C33—C3219.2 (8)
C46—O5—C14—C13164.3 (7)O10—C32—C33—O1193.2 (8)
C46—O5—C14—C1576.6 (9)C31—C32—C33—O1184.7 (7)
O4—C13—C14—O572.4 (7)O10—C32—C33—N179.6 (7)
C12—C13—C14—O5159.4 (5)C31—C32—C33—N1102.6 (7)
O4—C13—C14—C1548.5 (8)O1—C7—C35—C36174.9 (5)
C12—C13—C14—C1579.7 (7)C8—C7—C35—C3665.7 (6)
O5—C14—C15—O611.0 (9)O1—C7—C35—C3459.1 (6)
C13—C14—C15—O6104.2 (7)C8—C7—C35—C3460.2 (6)
O5—C14—C15—C16165.9 (5)C7—C35—C36—C3746.8 (7)
C13—C14—C15—C1678.9 (7)C34—C35—C36—C37173.6 (5)
O6—C15—C16—C4748.5 (8)C35—C36—C37—C4257.6 (6)
C14—C15—C16—C47134.7 (6)C35—C36—C37—C38178.9 (4)
O6—C15—C16—C1775.8 (8)C42—C37—C38—C3957.6 (5)
C14—C15—C16—C17101.0 (6)C36—C37—C38—C39176.6 (4)
C47—C16—C17—C1870.7 (7)C43—O12—C39—C38167.4 (6)
C15—C16—C17—C18165.3 (6)C43—O12—C39—C4064.9 (7)
C16—C17—C18—C1960.6 (7)C37—C38—C39—O12178.7 (4)
C16—C17—C18—C48177.8 (6)C37—C38—C39—C4053.7 (6)
C17—C18—C19—C20115.3 (7)O12—C39—C40—C41172.0 (4)
C48—C18—C19—C20123.8 (7)C38—C39—C40—C4147.5 (6)
C18—C19—C20—C21169.2 (5)O12—C39—C40—I149.6 (6)
C19—C20—C21—C22171.9 (5)C38—C39—C40—I174.9 (5)
C20—C21—C22—C23170.9 (5)C39—C40—C41—C4248.3 (6)
C21—C22—C23—C24177.1 (5)I1—C40—C41—C4274.0 (5)
C22—C23—C24—C495.0 (9)C38—C37—C42—C4156.7 (6)
C22—C23—C24—C25174.4 (5)C36—C37—C42—C41179.3 (4)
C50—O7—C25—C26166.7 (6)C40—C41—C42—C3754.5 (6)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O9—H9···O2i0.822.122.937 (5)172
O4—H4···O60.822.453.150 (7)144
Symmetry code: (i) x+1/2, y+1/2, z+1.

Experimental details

Crystal data
Chemical formulaC51H78INO12
Mr1024.04
Crystal system, space groupOrthorhombic, P212121
Temperature (K)293
a, b, c (Å)12.8905 (2), 12.9820 (3), 34.6469 (10)
V3)5798.0 (2)
Z4
Radiation typeCu Kα
µ (mm1)4.77
Crystal size (mm)0.45 × 0.42 × 0.37
Data collection
DiffractometerBruker SMART CCD
Absorption correctionMulti-scan
(SADABS; Bruker, 1996)
Tmin, Tmax0.223, 0.271
No. of measured, independent and
observed [I > 2σ(I)] reflections
12528, 8657, 6937
Rint0.019
(sin θ/λ)max1)0.588
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.049, 0.136, 1.03
No. of reflections8657
No. of parameters596
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.39, 0.50
Absolute structureFlack (1983), 3167 Friedel pairs
Absolute structure parameter0.015 (5)

Computer programs: SMART (Bruker, 1996), SAINT (Bruker, 1996), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O9—H9···O2i0.822.122.937 (5)172
O4—H4···O60.822.453.150 (7)144
Symmetry code: (i) x+1/2, y+1/2, z+1.
 

Acknowledgements

The project was supported by the Fujian Provincial Natural Science Foundation of China (grant No. 2011 J01093).

References

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First citationWhite, P. S. & Swindells, D. C. N. (1981). Acta Cryst. A37, C75–C76.  CrossRef IUCr Journals Google Scholar

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