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Acta Cryst. (2012). E68, m1466    [ doi:10.1107/S1600536812045503 ]

catena-Poly[[[aqua(2,2'-bipyridine-[kappa]2N,N')zinc]-[mu]-furan-2,5-dicarboxylato-[kappa]2O2:O5] dihydrate]

Y.-F. Li, Y. Xu, X.-L. Qin, Y.-P. Yuan and W.-Y. Gao

Abstract top

In the title hydrated coordination polymer, {[Zn(C6H2O5)(C10H8N2)(H2O)]·2H2O}n, an infinite [1-10] chain is formed by the linking of [Zn(C10H8N2)(H2O)]2+ entities by bridging, monodentate furan-2,5-dicarboxylate dianionic linkers. The Zn2+ coordination geometry is a trigonal bipyramid, with one N atom (from 2,2'-bipyridine) and one O atom (from the bridging dianion) in the axial positions. For each ZnII atom, the dihedral angle between the furan ring of its coordinated bridging ligand and its coordinated bipyridine ring system is 87.19 (8)°. O-H...O hydrogen bonds involving both the coordinated and uncoordinated water molecules generate a layer motif parallel to (001).

Comment top

As the analogous structure of BDC (benzene-1,4-dicarboxyl acid), FDA (furan-2,5-dicarboxyl acid) attracts attentions owing to the bond angle of two carboxyl groups about 126° Recently, we utilized furan-2,5-dicarboxyl acid as the ligand to construct coordination polymers (Li, et al., 2012). As an extension of this work, a chainlike compound, [Zn(H2O)(C10H8N2)(C6H2O5)].2H2O (I), is now determined.

The asymmetric unit of (I) is consisted of one Zn(II) cation, one furan-2,5-dicarboxylate anion, one 2,2'-bipyridine and three waters involving in one coordinated waters and two structural water (Fig.1). Zn cation is coordinated by two N atoms of 2,2'-bipyridine, one water O atoms and two carboxylate O atoms, exhibiting a triangle bipyramid geometry (Table 1) with one O atoms of furan-2,5-dicarboxylate and one nitrogen atom of 2,2'-bipyridine in the axial positions. The adjacent Zn cations are connected by the furan-2,5-dicarboxylate to infinite chain (Fig.2). Owater—H···O hydrogen bonds (Table 2) help to consolidate the structure.

Related literature top

For a related structure, see: Li, et al. (2012).

Experimental top

In a typically synthesized route of (I), furan-2,5-dicarboxyl acid (0.0156 g, 0.10 mmol), Zn(NO3)2.6H2O (0.0300 g, 0.10 mmol), and 2,2'-bipyridine (0.0156, 0.10 mmol) and NaOH (0.004, 0.10 mmol) were dissolved in water (5 ml, 278 mmol) under stirring. The mixture with molar ratio of 1 (furan-2,5-dicarboxyl acid): 1 (Zn(NO3)2.6H2O): 1 (2,2'-bipyridine): 1 NaOH: 2780 H2O was layed under room temperature for 5 days. The colorless block product was collected as a single phase.

Refinement top

Water H atoms were located in a difference Fourier map and refined with O—H = 0.87 (2) Å and Uiso(H) = 1.2Ueq(O). The carbon H-atoms were placed in calculated positions (C—H (furan and pyridine ring) = 0.93 Å) and were included in the refinement in the riding-model approximation, with Uiso(H) = 1.2Ueq(C).

Computing details top

Data collection: PROCESS-AUTO (Rigaku, 1998); cell refinement: PROCESS-AUTO (Rigaku, 1998); data reduction: Crystal Structure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2000); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. The unit cell of (I), showing displacement ellipsoids at the 50% probability level. [Symmetry code: (i) 1 + x, -1 + y, z.]
[Figure 2] Fig. 2. The polyhedral plot of (I), displaying the infinite chain formed by linking the adjacent Zn cations with furan-2,5-dicarboxylate.
[Figure 3] Fig. 3. The ball-stick packing diagram of (I). The adjacent chains are holded together by the Owater–H···O H-bonding interactions to the supermolecular net.
catena-Poly[[[aqua(2,2'-bipyridine-κ2N,N')zinc]-µ- furan-2,5-dicarboxylato-κ2O2:O5] dihydrate] top
Crystal data top
[Zn(C6H2O5)(C10H8N2)(H2O)]·2H2OZ = 2
Mr = 429.70F(000) = 440
Triclinic, P1Dx = 1.648 Mg m−3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5815 (17) ÅCell parameters from 2000 reflections
b = 9.2928 (19) Åθ = 3.3–27.5°
c = 12.753 (3) ŵ = 1.47 mm−1
α = 69.99 (3)°T = 293 K
β = 87.63 (3)°Block, colorless
γ = 65.85 (3)°0.43 × 0.34 × 0.23 mm
V = 866.2 (3) Å3
Data collection top
Rigaku R-AXIS RAPID
diffractometer		3925 independent reflections
Radiation source: fine-focus sealed tube3433 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 10.00 pixels mm-1θmax = 27.5°, θmin = 3.3°
ω scansh = −10→11
Absorption correction: multi-scan
(ABSCOR; Higashi, 1995)		k = −11→12
Tmin = 0.57, Tmax = 0.73l = −16→16
8557 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 1.10 w = 1/[σ2(Fo2) + (0.0684P)2]
where P = (Fo2 + 2Fc2)/3
3925 reflections(Δ/σ)max < 0.001
262 parametersΔρmax = 0.67 e Å−3
9 restraintsΔρmin = −0.59 e Å−3
Crystal data top
[Zn(C6H2O5)(C10H8N2)(H2O)]·2H2Oγ = 65.85 (3)°
Mr = 429.70V = 866.2 (3) Å3
Triclinic, P1Z = 2
a = 8.5815 (17) ÅMo Kα radiation
b = 9.2928 (19) ŵ = 1.47 mm−1
c = 12.753 (3) ÅT = 293 K
α = 69.99 (3)°0.43 × 0.34 × 0.23 mm
β = 87.63 (3)°
Data collection top
Rigaku R-AXIS RAPID
diffractometer		3925 independent reflections
Absorption correction: multi-scan
(ABSCOR; Higashi, 1995)		3433 reflections with I > 2σ(I)
Tmin = 0.57, Tmax = 0.73Rint = 0.023
8557 measured reflectionsθmax = 27.5°
Refinement top
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.102Δρmax = 0.67 e Å−3
S = 1.10Δρmin = −0.59 e Å−3
3925 reflectionsAbsolute structure: ?
262 parametersFlack parameter: ?
9 restraintsRogers parameter: ?
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Zn11.02440 (3)0.08858 (3)0.301753 (18)0.03278 (11)
O10.8000 (2)0.15494 (19)0.36940 (13)0.0406 (3)
O20.7541 (3)0.4185 (2)0.26829 (18)0.0583 (5)
O30.44358 (18)0.53732 (17)0.35155 (12)0.0331 (3)
O40.1984 (2)0.84783 (19)0.33670 (14)0.0437 (4)
O50.0295 (2)0.7310 (2)0.43028 (18)0.0558 (5)
N10.9017 (2)0.1152 (2)0.15016 (15)0.0381 (4)
N21.1346 (2)0.2204 (2)0.18046 (15)0.0366 (4)
C10.7097 (3)0.3148 (3)0.33458 (17)0.0351 (4)
C20.5420 (3)0.3677 (2)0.38022 (17)0.0308 (4)
C30.4610 (3)0.2801 (3)0.4468 (2)0.0401 (5)
H30.50140.16320.47730.048*
C40.3028 (3)0.3994 (3)0.4615 (2)0.0427 (5)
H40.21890.37650.50340.051*
C50.2977 (3)0.5523 (3)0.40305 (17)0.0329 (4)
C60.1649 (3)0.7242 (3)0.38908 (18)0.0355 (4)
C70.7801 (3)0.0635 (3)0.1426 (2)0.0494 (6)
H70.74560.00750.20820.059*
C80.7031 (4)0.0910 (4)0.0391 (3)0.0573 (7)
H80.61820.05450.03540.069*
C90.7551 (4)0.1728 (4)−0.0565 (2)0.0593 (7)
H90.70530.1926−0.12630.071*
C100.8824 (4)0.2266 (3)−0.0497 (2)0.0492 (6)
H100.91900.2821−0.11430.059*
C110.9536 (3)0.1952 (3)0.05628 (18)0.0387 (5)
C121.0886 (3)0.2478 (3)0.07396 (18)0.0373 (4)
C131.1640 (3)0.3239 (3)−0.0142 (2)0.0491 (6)
H131.13210.3414−0.08780.059*
C141.2854 (4)0.3726 (3)0.0090 (2)0.0558 (6)
H141.33680.4232−0.04890.067*
C151.3307 (4)0.3460 (3)0.1186 (2)0.0524 (6)
H151.41130.37990.13590.063*
C161.2541 (3)0.2686 (3)0.2017 (2)0.0465 (5)
H161.28620.24850.27590.056*
O1W1.1508 (2)0.1017 (2)0.43471 (13)0.0397 (3)
H1A1.079 (3)0.175 (3)0.462 (2)0.048*
H1B1.189 (3)0.005 (2)0.4890 (18)0.048*
O2W0.8859 (7)0.6378 (6)0.2753 (2)0.1299 (15)
H2A0.872 (8)0.543 (5)0.291 (4)0.156*
H2B0.919 (8)0.632 (7)0.342 (3)0.156*
O3W0.5178 (5)0.8678 (5)0.2312 (3)0.1173 (12)
H3A0.456 (5)0.842 (6)0.285 (3)0.141*
H3B0.612 (4)0.777 (5)0.240 (4)0.141*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Zn10.03146 (16)0.02874 (14)0.03086 (15)−0.00672 (10)0.00895 (10)−0.01011 (10)
O10.0337 (8)0.0338 (7)0.0378 (8)−0.0014 (6)0.0106 (6)−0.0102 (7)
O20.0560 (11)0.0468 (9)0.0676 (12)−0.0222 (9)0.0314 (10)−0.0170 (9)
O30.0296 (7)0.0248 (6)0.0381 (7)−0.0058 (6)0.0078 (6)−0.0109 (6)
O40.0395 (9)0.0297 (7)0.0515 (9)−0.0041 (6)0.0042 (7)−0.0152 (7)
O50.0394 (10)0.0562 (10)0.0831 (13)−0.0156 (8)0.0249 (9)−0.0454 (11)
N10.0325 (9)0.0392 (9)0.0380 (9)−0.0089 (8)0.0072 (7)−0.0165 (8)
N20.0384 (10)0.0324 (8)0.0339 (9)−0.0114 (7)0.0099 (7)−0.0108 (8)
C10.0311 (10)0.0355 (10)0.0346 (10)−0.0092 (9)0.0064 (8)−0.0140 (9)
C20.0286 (10)0.0249 (8)0.0335 (9)−0.0053 (7)0.0036 (8)−0.0116 (8)
C30.0385 (12)0.0266 (9)0.0505 (12)−0.0106 (9)0.0113 (10)−0.0128 (9)
C40.0360 (12)0.0384 (11)0.0554 (13)−0.0154 (9)0.0186 (10)−0.0205 (11)
C50.0284 (10)0.0323 (9)0.0373 (10)−0.0083 (8)0.0072 (8)−0.0175 (9)
C60.0317 (11)0.0335 (10)0.0404 (11)−0.0052 (8)0.0028 (8)−0.0225 (9)
C70.0407 (13)0.0544 (14)0.0549 (14)−0.0168 (11)0.0118 (11)−0.0263 (13)
C80.0395 (14)0.0617 (16)0.0741 (18)−0.0131 (12)0.0014 (12)−0.0378 (16)
C90.0544 (17)0.0597 (16)0.0537 (15)−0.0058 (13)−0.0076 (13)−0.0294 (14)
C100.0542 (15)0.0433 (12)0.0390 (12)−0.0084 (11)0.0010 (10)−0.0162 (11)
C110.0384 (12)0.0325 (10)0.0347 (10)−0.0039 (9)0.0059 (9)−0.0133 (9)
C120.0389 (12)0.0288 (9)0.0334 (10)−0.0051 (8)0.0083 (8)−0.0102 (8)
C130.0528 (15)0.0445 (12)0.0349 (11)−0.0125 (11)0.0143 (10)−0.0073 (10)
C140.0545 (16)0.0459 (13)0.0536 (15)−0.0193 (12)0.0230 (12)−0.0062 (12)
C150.0469 (15)0.0481 (13)0.0614 (16)−0.0234 (12)0.0133 (12)−0.0152 (13)
C160.0487 (14)0.0474 (12)0.0450 (12)−0.0217 (11)0.0098 (10)−0.0168 (11)
O1W0.0422 (9)0.0358 (7)0.0343 (8)−0.0091 (7)0.0081 (6)−0.0140 (7)
O2W0.221 (4)0.178 (4)0.0612 (16)−0.155 (4)0.025 (2)−0.038 (2)
O3W0.091 (2)0.135 (3)0.123 (3)−0.069 (2)0.019 (2)−0.017 (2)
Geometric parameters (Å, º) top
Zn1—O4i2.0180 (17)C7—H70.9300
Zn1—O12.0221 (17)C8—C91.364 (5)
Zn1—N22.078 (2)C8—H80.9300
Zn1—O1W2.1142 (17)C9—C101.391 (4)
Zn1—N12.1298 (19)C9—H90.9300
O1—C11.281 (3)C10—C111.392 (3)
O2—C11.226 (3)C10—H100.9300
O3—C51.367 (2)C11—C121.481 (3)
O3—C21.369 (2)C12—C131.397 (3)
O4—C61.255 (3)C13—C141.371 (4)
O5—C61.242 (3)C13—H130.9300
N1—C71.334 (3)C14—C151.378 (4)
N1—C111.342 (3)C14—H140.9300
N2—C121.338 (3)C15—C161.371 (4)
N2—C161.344 (3)C15—H150.9300
C1—C21.483 (3)C16—H160.9300
C2—C31.345 (3)O1W—H1A0.873 (16)
C3—C41.413 (3)O1W—H1B0.864 (16)
C3—H30.9300O2W—H2A0.890 (19)
C4—C51.343 (3)O2W—H2B0.890 (19)
C4—H40.9300O3W—H3A0.879 (19)
C5—C61.488 (3)O3W—H3B0.871 (19)
C7—C81.395 (4)
O4i—Zn1—O1123.96 (7)O5—C6—C5116.0 (2)
O4i—Zn1—N2101.59 (8)O4—C6—C5117.87 (19)
O1—Zn1—N2134.31 (7)O4—C6—C5117.87 (19)
O4i—Zn1—O1W89.61 (7)N1—C7—C8121.8 (3)
O1—Zn1—O1W91.03 (7)N1—C7—H7119.1
N2—Zn1—O1W92.77 (7)C8—C7—H7119.1
O4i—Zn1—N196.59 (8)C9—C8—C7118.5 (3)
O1—Zn1—N192.21 (7)C9—C8—H8120.7
N2—Zn1—N178.06 (8)C7—C8—H8120.7
O1W—Zn1—N1169.79 (7)C8—C9—C10120.1 (2)
C1—O1—Zn1112.97 (14)C8—C9—H9119.9
C5—O3—C2105.96 (16)C10—C9—H9119.9
C6—O4—Zn1ii122.19 (15)C9—C10—C11118.3 (3)
C7—N1—C11119.8 (2)C9—C10—H10120.8
C7—N1—Zn1125.87 (17)C11—C10—H10120.8
C11—N1—Zn1114.32 (15)N1—C11—C10121.3 (2)
C12—N2—C16119.0 (2)N1—C11—C12115.47 (19)
C12—N2—Zn1115.74 (15)C10—C11—C12123.2 (2)
C16—N2—Zn1125.13 (16)N2—C12—C13120.9 (2)
O2—C1—O1124.2 (2)N2—C12—C11116.2 (2)
O2—C1—O1124.2 (2)C13—C12—C11122.9 (2)
O2—C1—C2121.42 (19)C14—C13—C12119.4 (2)
O2—C1—C2121.42 (19)C14—C13—H13120.3
O1—C1—C2114.39 (19)C12—C13—H13120.3
C3—C2—O3110.11 (18)C13—C14—C15119.4 (2)
C3—C2—C1132.51 (18)C13—C14—H14120.3
O3—C2—C1117.38 (18)C15—C14—H14120.3
C2—C3—C4106.94 (19)C16—C15—C14118.5 (2)
C2—C3—H3126.5C16—C15—H15120.7
C4—C3—H3126.5C14—C15—H15120.7
C5—C4—C3106.4 (2)N2—C16—C15122.8 (2)
C5—C4—H4126.8N2—C16—H16118.6
C3—C4—H4126.8C15—C16—H16118.6
C4—C5—O3110.58 (18)Zn1—O1W—H1A110.7 (18)
C4—C5—C6130.7 (2)Zn1—O1W—H1B109.3 (17)
O3—C5—C6118.72 (18)H1A—O1W—H1B106 (2)
O5—C6—O4126.2 (2)H2A—O2W—H2B103 (3)
O5—C6—O4126.2 (2)H3A—O3W—H3B108 (3)
O4i—Zn1—O1—C1−179.73 (13)C2—O3—C5—C4−0.2 (2)
N2—Zn1—O1—C1−4.84 (19)C2—O3—C5—C6178.97 (17)
O1W—Zn1—O1—C190.05 (15)O4—O4—C6—O50.00 (18)
N1—Zn1—O1—C1−80.27 (15)Zn1ii—O4—C6—O5−3.8 (3)
O4i—Zn1—N1—C782.2 (2)O4—O4—C6—C50.00 (19)
O1—Zn1—N1—C7−42.31 (19)Zn1ii—O4—C6—C5175.53 (13)
N2—Zn1—N1—C7−177.3 (2)C4—C5—C6—O5−6.4 (3)
O1W—Zn1—N1—C7−150.7 (3)O3—C5—C6—O5174.61 (18)
O4i—Zn1—N1—C11−99.23 (15)C4—C5—C6—O4174.2 (2)
O1—Zn1—N1—C11136.22 (15)O3—C5—C6—O4−4.8 (3)
N2—Zn1—N1—C111.27 (14)C4—C5—C6—O4174.2 (2)
O1W—Zn1—N1—C1127.8 (4)O3—C5—C6—O4−4.8 (3)
O4i—Zn1—N2—C1290.59 (16)C11—N1—C7—C8−0.4 (4)
O1—Zn1—N2—C12−85.08 (17)Zn1—N1—C7—C8178.01 (18)
O1W—Zn1—N2—C12−179.24 (15)N1—C7—C8—C90.2 (4)
N1—Zn1—N2—C12−3.79 (14)C7—C8—C9—C100.1 (4)
O4i—Zn1—N2—C16−84.86 (19)C8—C9—C10—C11−0.2 (4)
O1—Zn1—N2—C1699.5 (2)C7—N1—C11—C100.3 (3)
O1W—Zn1—N2—C165.32 (19)Zn1—N1—C11—C10−178.29 (17)
N1—Zn1—N2—C16−179.24 (19)C7—N1—C11—C12179.80 (19)
O2—O2—C1—O10.00 (12)Zn1—N1—C11—C121.2 (2)
O2—O2—C1—C20.00 (9)C9—C10—C11—N10.0 (3)
Zn1—O1—C1—O2−0.9 (3)C9—C10—C11—C12−179.4 (2)
Zn1—O1—C1—O2−0.9 (3)C16—N2—C12—C130.5 (3)
Zn1—O1—C1—C2178.44 (13)Zn1—N2—C12—C13−175.20 (16)
C5—O3—C2—C30.1 (2)C16—N2—C12—C11−178.66 (19)
C5—O3—C2—C1179.71 (16)Zn1—N2—C12—C115.6 (2)
O2—C1—C2—C3175.1 (2)N1—C11—C12—N2−4.5 (3)
O2—C1—C2—C3175.1 (2)C10—C11—C12—N2175.0 (2)
O1—C1—C2—C3−4.2 (3)N1—C11—C12—C13176.33 (19)
O2—C1—C2—O3−4.4 (3)C10—C11—C12—C13−4.2 (3)
O2—C1—C2—O3−4.4 (3)N2—C12—C13—C14−0.7 (3)
O1—C1—C2—O3176.30 (17)C11—C12—C13—C14178.5 (2)
O3—C2—C3—C40.0 (3)C12—C13—C14—C15−0.1 (4)
C1—C2—C3—C4−179.5 (2)C13—C14—C15—C161.1 (4)
C2—C3—C4—C5−0.1 (3)C12—N2—C16—C150.5 (4)
C3—C4—C5—O30.2 (3)Zn1—N2—C16—C15175.76 (19)
C3—C4—C5—C6−178.8 (2)C14—C15—C16—N2−1.3 (4)
Symmetry codes: (i) x+1, y−1, z; (ii) x−1, y+1, z.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1W—H1A···O5iii0.87 (2)1.89 (2)2.724 (2)159 (2)
O1W—H1B···O1iv0.86 (2)1.88 (2)2.701 (3)158 (2)
O2W—H2A···O20.89 (2)1.91 (3)2.731 (4)152 (5)
O2W—H2B···O5v0.89 (2)2.12 (3)2.902 (4)146 (5)
O3W—H3A···O40.88 (2)2.27 (3)3.050 (4)148 (4)
O3W—H3B···O2W0.87 (2)2.15 (3)2.943 (7)152 (5)
Symmetry codes: (iii) −x+1, −y+1, −z+1; (iv) −x+2, −y, −z+1; (v) x+1, y, z.
Selected bond lengths (Å) top
Zn1—O4i2.0180 (17)Zn1—O1W2.1142 (17)
Zn1—O12.0221 (17)Zn1—N12.1298 (19)
Zn1—N22.078 (2)
Symmetry code: (i) x+1, y−1, z.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1W—H1A···O5ii0.873 (16)1.891 (19)2.724 (2)159 (2)
O1W—H1B···O1iii0.864 (16)1.88 (2)2.701 (3)158 (2)
O2W—H2A···O20.890 (19)1.91 (3)2.731 (4)152 (5)
O2W—H2B···O5iv0.890 (19)2.12 (3)2.902 (4)146 (5)
O3W—H3A···O40.879 (19)2.27 (3)3.050 (4)148 (4)
O3W—H3B···O2W0.871 (19)2.15 (3)2.943 (7)152 (5)
Symmetry codes: (ii) −x+1, −y+1, −z+1; (iii) −x+2, −y, −z+1; (iv) x+1, y, z.
Acknowledgements top

This project was sponsored by the Scientific Research Foundation for the Returned Overseas Team, Chinese Education Ministry.

references
References top

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Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.