research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890

Synthesis and structure of 1-(2-bromo­phen­yl)-2-chloro-3-(2-chloracet­yl)-1H-indole

CROSSMARK_Color_square_no_text.svg

aSchool of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, People's Republic of China, bState Key Laboratory of Crystal Materials, Shandong University, Jinan 250100, People's Republic of China, and cTechnical Institute of Physics and Chemistry, Chinese Academy of Science, Beijing 100190, People's Republic of China
*Correspondence e-mail: fangqi@sdu.edu.cn

Edited by A. J. Lough, University of Toronto, Canada (Received 31 October 2016; accepted 25 November 2016; online 30 November 2016)

In the title indole derivative, C16H10BrCl2NO, the dihedral angle between the mean plane of the indole ring system and the mean plane of the disordered 2-bromo­phenyl ring is 77.6 (1)°. The non-H atoms of the chloracetyl group are essentially coplanar with the indole core. In the crystal, pairs of mol­ecules are face-to-face embraced via two weak C—H⋯O hydrogen bonds, forming inversion dimers with an inter­planar distance between two parallel indole planes of 3.360 (3) Å. These dimers are connected by head-to-head Cl⋯Cl inter­molecular contacts to build a two-dimensional mol­ecular sheet parallel to (101). Neighbouring mol­ecular sheets are stacked together to construct the three-dimensional structure by further short Cl⋯Cl inter­molecular contacts. The atoms of the bromo­phenyl group were refined as disordered over two sets of sites with refined occupancies of 0.61 (2) and 0.39 (2).

1. Chemical context

Indole derivatives occur in many natural products and they have been widely used as inter­mediates in the pharmaceutical industry (Chaskar et al., 2010[Chaskar, A., Deokar, H., Padalkar, V., Phatangare, K. & Patil, S. K. (2010). J. Korean Chem. Soc. 54, 411-413.]). Indolyl is the base skeleton of tryptophan, which is one of the essential amino acids of human beings. In addition, indole derivatives such as indole-3-acetic acid (Won et al., 2011[Won, C., Shen, X., Mashiguchi, K., Zheng, Z., Dai, X., Cheng, Y., Kasahara, H., Kamiya, Y., Chory, J. & Zhao, Y. (2011). Proc. Natl Acad. Sci. USA, 108, 18518-18523.]), serotonin (Batsikadze et al., 2013[Batsikadze, G., Paulus, W., Kuo, M.-F. & Nitsche, M. A. (2013). Neuropsychopharmacology, 38, 2260-2267.]) and melatonin (Diss et al., 2013[Diss, L. B., Robinson, S. D., Wu, Y., Fidalgo, S., Yeoman, M. S. & Patel, B. A. (2013). ACS Chem. Neurosci. 4, 879-887.]) act as hormones existing in different kinds of plants and animals. Some indole derivatives show anti­carcinogenic, hypotensive and anti­neoplastic activities (Zhang et al., 2015[Zhang, M.-Z., Chen, Q. & Yang, G.-F. (2015). Eur. J. Med. Chem. 89, 421-441.]). The indole skeleton can be found in many bioactive drugs, such as ajmalicine (Du et al., 2014[Du, Y., Feng, M., Wang, Y.-N., Cheng, L., Wang, M. & Zhao, C.-J. (2014). Asian J. Chem. 26, 7245-7248.]), vinblastine (Ishikawa et al., 2008[Ishikawa, H., Colby, D. A. & Boger, D. L. (2008). J. Am. Chem. Soc. 130, 420-421.]) and reserpine (Chen & Huang, 2005[Chen, F.-E. & Huang, J. (2005). Chem. Rev. 105, 4671-4706.]).

[Scheme 1]

To date, a collection of more than six thousand structures with the 1H-indole substructure have been recorded in the Cambridge Structural Database (CSD; Groom et al., 2016[Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171-179.]), which includes a subset of more than one hundred structures containing the 1-phenyl-1H-indole substructure, including as 1-phenyl-indolin-2-one and several derivatives, reported by our group (Wang et al., 2015[Wang, L., Zhang, M., Jin, Y.-Y., Lu, Q. & Fang, Q. (2015). Acta Cryst. C71, 69-74.]). However, the structures of halogen-substituted 1-phenyl-1H-indole derivatives, such as 2-iodo-1-phenyl-1H-indole (Messaoud et al., 2015[Messaoud, M. Y. A., Bentabed-Ababsa, G., Hedidi, M., Derdour, A., Chevallier, F., Halauko, Y. S., Ivashkevich, O. A., Matulis, V. E., Picot, L., Thiéry, V., Roisnel, T., Dorcet, V. & Mongin, F. (2015). Beilstein J. Org. Chem. 11, 1475-1485.]) are very limited. Recently, we unexpectedly synthesized the new title compound, 1-(2-bromo­phen­yl)-2-chloro-3-(2-chloracet­yl)-1H-indole. Herein we report its synthesis and crystal structure.

2. Structural commentary

As shown in Fig. 1[link], the mol­ecule consists basically of two planes, the indole unit and the phenyl ring. Nine non-H atoms (N1/C1–C8) are essentially planar and their mean plane defines the indole plane. Five more non-H atoms are approximately co-planar with the indole core with deviations of −0.050 (2) Å for C15, 0.067 (1) Å for Cl1, 0.032 (1) Å for O1, −0.190 (2) Å for C16, and −0.355 (1) Å for Cl2. The C4—H4⋯O1 short intermolecular contact (see Table 1[link]) plays an important role in keeping the four non-H atoms of chloracetyl co-planar with the indole plane. The mean plane of the 2-bromophenyl ring (defined as the mean plane of the six C atoms of the major component and six C atoms of the minor component of the disordered benzene ring of the 2-bromo­phenyl group) subtends a dihedral angle of 77.6 (1)° to the indole plane.

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
C4—H4⋯O1 0.92 (2) 2.502 (19) 3.053 (2) 118.5 (15)
C10—H10A⋯O1i 0.93 2.45 3.302 (7) 152
Symmetry code: (i) -x+1, -y+1, -z+1.
[Figure 1]
Figure 1
The mol­ecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level. The minor component of disorder is shown with open bonds.

The deviation of atom N1 from the C1,C8,C9 triangle is very small [0.005 (2) Å], indicating sp2 hybridization of this atom. The five-membered ring of the indole core shows similar bond-length characteristics to those of the reference structure 2-iodo-1-phenyl-1H-indole (Messaoud et al., 2015[Messaoud, M. Y. A., Bentabed-Ababsa, G., Hedidi, M., Derdour, A., Chevallier, F., Halauko, Y. S., Ivashkevich, O. A., Matulis, V. E., Picot, L., Thiéry, V., Roisnel, T., Dorcet, V. & Mongin, F. (2015). Beilstein J. Org. Chem. 11, 1475-1485.]). The C1=C2 bond [1.374 (2) Å] is slightly longer than a double bond and longer than that of the reference structure. This is because of certain C1 C2 C15 π-conjugation of the three atoms, revealed by the shorter single bond C2—C15 [1.463 (2) Å]. The C1—N1 bond shows strong double-bond character with a length of 1.365 (2) Å while C8—N1 [1.3939 (19) Å] is shorter than a single C—N bond. Both the C1—N1 and the C8—N1 bond lengths are shorter than those of the reference structure.

3. Supra­molecular features

In the crystal, pairs of mol­ecules are connected by two C—H⋯O hydrogen bonds (see Table 1[link]) and are face-to-face embraced to form an inversion dimer, with the inter­planar spacing between the two parallel indole planes being 3.360 (3) Å (see Fig. 2[link]). Neighbouring dimers are further connected by a type of head-to-head Cl2⋯Cl2 (−x + 1, −y + 2, −z + 1) short contacts of 3.3759 (8) Å, forming chains along the b-axis direction. As shown in Fig. 3[link], the chains are linked by further side-by-side Cl1⋯Cl1(−x + 2, −y + 1, −z + 1) [3.3430 (7) Å] short contacts, forming sheets parallel to the ab plane.

[Figure 2]
Figure 2
A view along the a* direction, showing the C10—H10A⋯O1i hydrogen bond in a dimer and the Cl2⋯Cl2ii short contact forming chains along the b-axis direction. [Symmetry codes: (i) −x + 1, −y + 1, −z + 1; (ii) −x + 1, −y + 2, −z + 1.]
[Figure 3]
Figure 3
A view along the c-axis direction, showing the C—H⋯O hydrogen bonds (see Table 1[link]) and Cl⋯Cl contacts as dashed lines. Only H atoms H4 and H10A have been included. The C atoms of the minor component of the disordered benzene ring have been omitted.

The inter­molecular inter­actions can be scaled by the electronic transfer integrals (t) between two neighbouring mol­ecules and can be calculated according to Deng & Goddard, 2004[Deng, W.-Q. & Goddard, W. A. III (2004). J. Phys. Chem. B, 108, 8614-8621.]) as t = (EHOMO − EHOMO-1)/2 where EHOMO and EHOMO-1 are the energy levels of the HOMO (highest occupied mol­ecular orbital) and the HOMO-1 orbital of a two-mol­ecule pair, respectively. The calculation was carried out by DFT methods at the level of b31yp/6-311g(d) using the GAUSSIAN03 program (Frisch et al., 2003[Frisch, M. J., et al. (2003). GAUSSIAN03. Gaussian Inc., Pittsburgh, PA, USA.]). The t values for the face-to-face mol­ecular pair (the dimer), the Cl2⋯Cl2 head-to-head pair, and the Cl1⋯Cl1 side-by-side pair were calculated to be 0.051, 0.00053, 0.00076 eV, respectively. This indicates that the inter­molecular inter­actions of the dimer are the strongest.

Fig. 4[link] shows the calculated electronic transfer integrals (t) of an isolated face-to-face dimer versus the spacing between the two indole planes of the dimer. When varying the spacing, the mol­ecular configuration is fixed to the X-ray mol­ecular structure that resulted from a non-disorder refinement. The spacing (3.493 Å) at the peak of the t-curve is slightly larger than the spacing [3.359 (3) Å] in the X-ray structure, indicating a shrinking of the spacing of the dimer when the crystal packing is concerned.

[Figure 4]
Figure 4
The evolution of the calculated electronic transfer integrals (t) as a function of spacing between the two mol­ecules of the face-to-face dimer. The optimized spacing at the peak t-curve and the spacing in the X-ray structure are indicated.

4. Database survey

A search of the Cambridge Structural Database (WebCSD, last update 2016-10-26) for the substructure of the non-H 1H-indole skeleton gave 6467 hits. There are 151 structures which contain the 1-phenyl-1H-indole substructure. The only structure of the 2-halogen-1-phenyl-1H-indole type is 2-iodo-1-phenyl-1H-indole (Messaoud et al., 2015[Messaoud, M. Y. A., Bentabed-Ababsa, G., Hedidi, M., Derdour, A., Chevallier, F., Halauko, Y. S., Ivashkevich, O. A., Matulis, V. E., Picot, L., Thiéry, V., Roisnel, T., Dorcet, V. & Mongin, F. (2015). Beilstein J. Org. Chem. 11, 1475-1485.]) and no structure for the title compound. There are no records of this compound in the SciFinder Database.

5. Synthesis and crystallization

The title compound was synthesized in three steps (see Fig. 5[link]). Firstly, compound 2 was synthesized by acyl­ation of compound 1 with chloracetyl chloride in N, N-di­methyl­acetamide (DMF). Compound 1 (6.58 g, 26.5 mmol), chloracetyl chloride (3.2 mL, 40 mmol), and DMF solvent (2 mL) were added into a 250 mL flask and the mixture was stirred at 353 K for 2 h. Then 200 mL water was added into the mixture and it was kept stirring for 0.5 h. The colorless products (13.9 g) were compound 2 together with some unreacted chloracetyl chloride.

[Figure 5]
Figure 5
Reaction scheme.

Secondly, a Friedel–Crafts reaction of compound 2, under the catalysis of anhydrous AlCl3, resulted in the ring-closure compound 3. To a 250 mL flask, compound 2 (8.22 g, 25.4 mmol) and anhydrous AlCl3 (10.15 g, 76.1 mmol) were added and stirred mechanically for 15 minutes at 460 K. The mixture was poured into 200 mL water and extracted with CH2Cl2. The crude product was purified by silica gel column chromatography with ethyl acetate and petroleum ether (v/v = 1:10) as eluent. Compound 3 was obtained together with some residual chloracetyl chloride (3.50 g in all).

Finally, the title compound 4 was obtained as a by-product of trimerization of compound 3 in the presence of POCl3 and chloracetyl chloride. As shown in Fig. 5[link], the Cl atom bonded to the indole core should come from POCl3, which is supported by our other experiment. Compound 3 (0.92 g, 3.2 mmol) and 6 mL POCl3 were added into a 100 mL Schlenk tube and the mixture was stirred at 383 K in an argon atmosphere for 9 h. After cooling, the mixture was poured into 500 mL ice–water and stirred intensely until a black solid appeared. The solid was dissolved in CH2Cl2, washed with water and dried with MgSO4. The solvent was removed and the crude solid was initially separated by silica gel column chromatography with ethyl acetate and petroleum ether (v/v = 1:100) as eluent to obtain a mixture, which consists of the compound of trimerization (will be reported elsewhere) and the title compound 4. The colorless crystals of compound 4 (0.0093 g, m. p. 456–458 K), which were suitable for X-ray structure determination, were obtained by a silica gel column chromatography of the above mixture with n-hexane as eluent, following a quick evaporation of the n-hexane solution overnight. 1H NMR (400 MHz, CDCl3) δ 8.46 (d, J = 8.0 Hz, 1H), 7.85 (d, J = 8.0 Hz, 1H), 7.57 (t, J = 15.2 Hz, 1H), 7.50 (t, J = 15.2 Hz, 1H), 7.43 (d, J = 7.6 Hz, 1H), 7.37 (t, J = 15.2 Hz, 1H), 7.27(t, J = 16.0 Hz, 1H), 6.85 (d, J = 8.0 Hz, 1H), 4.86 (s, 1H). As shown in Fig. 6[link], the 1H NMR signals of all protons of the title compound are well separated and well characterized.

[Figure 6]
Figure 6
The 1H NMR spectra of the title compound.

6. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link]. H atoms of the disordered benzene ring were placed at calculated positions and refined using a riding-model approximation with C—H = 0.93 Å and Uiso = 1.2Ueq(C). All other H atoms were located in difference maps and freely refined, leading to C—H distances from 0.85 (2) to 1.08 (2) Å. The 2-bromo­phenyl group was refined as disordered over two sets of sites, which gave better results (R1 = 0.032, Δρmax= 0.27). By comparison, the results of the non-disordered treatment were relatively poor (R1 = 0.043, Δρmax= 0.93). However, the non-disordered mol­ecular geometry was used for DFT calculation in this work.

Table 2
Experimental details

Crystal data
Chemical formula C16H10BrCl2NO
Mr 383.06
Crystal system, space group Monoclinic, P21/n
Temperature (K) 297
a, b, c (Å) 10.2155 (10), 11.3645 (11), 13.5252 (13)
β (°) 101.141 (2)
V3) 1540.6 (3)
Z 4
Radiation type Mo Kα
μ (mm−1) 3.01
Crystal size (mm) 0.48 × 0.41 × 0.38
 
Data collection
Diffractometer Bruker APEXII CCD
Absorption correction Multi-scan (APEX2; Bruker, 2005[Bruker (2005). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.])
Tmin, Tmax 0.324, 0.398
No. of measured, independent and observed [I > 2σ(I)] reflections 19200, 4126, 2654
Rint 0.084
(sin θ/λ)max−1) 0.689
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.032, 0.086, 0.94
No. of reflections 4126
No. of parameters 266
No. of restraints 2
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.27, −0.37
Computer programs: APEX2 and SAINT (Bruker, 2005[Bruker (2005). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]), SHELXS97, SHELXL97 and SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]).

Supporting information


Computing details top

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

1-(2-Bromophenyl)-2-chloro-3-(2-chloracetyl)-1H-indole top
Crystal data top
C16H10BrCl2NOF(000) = 760
Mr = 383.06Dx = 1.652 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6321 reflections
a = 10.2155 (10) Åθ = 2.3–26.3°
b = 11.3645 (11) ŵ = 3.01 mm1
c = 13.5252 (13) ÅT = 297 K
β = 101.141 (2)°Parallelpiped, colourless
V = 1540.6 (3) Å30.48 × 0.41 × 0.38 mm
Z = 4
Data collection top
Bruker APEXII CCD
diffractometer
4126 independent reflections
Radiation source: fine-focus sealed tube2654 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.084
Detector resolution: 8.3 pixels mm-1θmax = 29.3°, θmin = 2.3°
ω scansh = 1413
Absorption correction: multi-scan
(APEX2; Bruker, 2005)
k = 1515
Tmin = 0.324, Tmax = 0.398l = 1818
19200 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: mixed
wR(F2) = 0.086H atoms treated by a mixture of independent and constrained refinement
S = 0.94 w = 1/[σ2(Fo2) + (0.0405P)2]
where P = (Fo2 + 2Fc2)/3
4126 reflections(Δ/σ)max = 0.002
266 parametersΔρmax = 0.27 e Å3
2 restraintsΔρmin = 0.37 e Å3
Special details top

Experimental. Scan width 0.3° ω , Crystal to detector distance 5.964 cm, exposure time 10s, 10 hours for data collection, without scale. The 4 omiga-run take the following theta, initial-omiga, phi values and the following sweep-ranges, respectively -25, -28, 0, 186 (negatively run) -28, 146, 180, 186 (positively run) -33, -28, 90, 186 (negatively run) -33, 127, 270, 220 (positively run)

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
Br10.9017 (3)0.45726 (16)0.23888 (15)0.0680 (7)0.61 (2)
Br1'0.8772 (11)0.4504 (4)0.2351 (4)0.1042 (14)0.39 (2)
Cl10.84021 (4)0.52798 (5)0.50311 (4)0.06661 (18)
Cl20.58942 (6)0.87898 (4)0.54210 (5)0.07744 (19)
O10.42385 (12)0.70363 (11)0.42434 (10)0.0616 (4)
N10.68599 (12)0.39373 (11)0.37045 (10)0.0431 (3)
C10.69364 (14)0.49615 (15)0.42401 (13)0.0416 (4)
C20.57445 (15)0.55577 (13)0.40546 (13)0.0391 (4)
C30.48447 (14)0.48228 (14)0.33524 (12)0.0379 (3)
C40.35010 (16)0.49101 (17)0.28691 (14)0.0467 (4)
C50.29617 (18)0.40323 (18)0.22190 (14)0.0539 (5)
C60.37137 (19)0.30638 (18)0.20265 (15)0.0569 (5)
C70.50340 (19)0.29551 (17)0.24809 (14)0.0520 (4)
C80.55681 (15)0.38361 (13)0.31437 (12)0.0401 (4)
C90.7934 (11)0.3110 (9)0.3708 (9)0.040 (2)0.61 (2)
C100.7877 (9)0.2168 (11)0.4317 (7)0.059 (2)0.61 (2)
H10A0.72000.21130.46860.070*0.61 (2)
C110.8827 (10)0.1295 (8)0.4386 (7)0.079 (3)0.61 (2)
H11A0.87930.06480.48020.094*0.61 (2)
C120.9831 (7)0.1383 (7)0.3834 (8)0.067 (5)0.61 (2)
H12A1.04740.07940.38910.081*0.61 (2)
C130.9900 (11)0.2300 (12)0.3216 (9)0.062 (3)0.61 (2)
H13A1.05690.23420.28390.074*0.61 (2)
C140.8935 (12)0.3191 (8)0.3156 (10)0.044 (2)0.61 (2)
C9'0.7814 (16)0.3002 (12)0.3785 (15)0.041 (4)0.39 (2)
C10'0.7798 (10)0.1928 (12)0.4275 (10)0.042 (3)0.39 (2)
H10B0.71100.17540.46110.050*0.39 (2)
C11'0.8812 (10)0.1116 (7)0.4262 (9)0.062 (4)0.39 (2)
H11B0.88010.03970.45890.074*0.39 (2)
C12'0.9841 (11)0.1377 (11)0.3759 (12)0.078 (9)0.39 (2)
H12B1.05190.08330.37510.094*0.39 (2)
C13'0.9857 (15)0.2451 (15)0.3270 (14)0.053 (5)0.39 (2)
H13B1.05460.26250.29330.063*0.39 (2)
C14'0.8844 (19)0.3263 (12)0.3282 (16)0.051 (5)0.39 (2)
C150.53832 (16)0.66877 (14)0.44448 (12)0.0427 (4)
C160.64660 (19)0.73974 (16)0.50983 (16)0.0537 (5)
H50.2000 (19)0.4086 (16)0.1867 (14)0.054 (5)*
H40.305 (2)0.5574 (17)0.3006 (15)0.062 (6)*
H60.3308 (18)0.2474 (17)0.1547 (14)0.058 (5)*
H70.555 (2)0.240 (2)0.2376 (15)0.072 (7)*
H16A0.6823 (19)0.6949 (18)0.5708 (16)0.063 (6)*
H16B0.728 (2)0.7566 (19)0.4713 (15)0.074 (6)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Br10.0676 (9)0.0545 (7)0.0882 (9)0.0102 (3)0.0310 (8)0.0153 (4)
Br1'0.113 (3)0.0880 (14)0.131 (2)0.0047 (11)0.0714 (17)0.0209 (9)
Cl10.0333 (2)0.0777 (3)0.0813 (4)0.0123 (2)0.0078 (2)0.0336 (3)
Cl20.1014 (4)0.0418 (3)0.0902 (4)0.0102 (3)0.0213 (3)0.0139 (2)
O10.0450 (7)0.0610 (8)0.0766 (9)0.0230 (6)0.0063 (6)0.0095 (7)
N10.0339 (7)0.0424 (7)0.0506 (8)0.0114 (6)0.0025 (6)0.0093 (6)
C10.0295 (7)0.0446 (8)0.0488 (10)0.0049 (7)0.0032 (7)0.0088 (7)
C20.0321 (7)0.0402 (8)0.0453 (9)0.0058 (6)0.0081 (7)0.0018 (7)
C30.0322 (7)0.0397 (8)0.0410 (9)0.0013 (6)0.0052 (7)0.0043 (7)
C40.0318 (8)0.0526 (10)0.0545 (11)0.0037 (8)0.0056 (7)0.0118 (9)
C50.0382 (9)0.0636 (12)0.0552 (12)0.0099 (8)0.0025 (8)0.0127 (9)
C60.0576 (12)0.0555 (11)0.0526 (11)0.0156 (9)0.0020 (9)0.0019 (9)
C70.0556 (11)0.0442 (10)0.0536 (11)0.0014 (9)0.0045 (9)0.0036 (8)
C80.0348 (8)0.0414 (8)0.0429 (9)0.0026 (7)0.0042 (7)0.0009 (7)
C90.040 (4)0.037 (3)0.042 (4)0.017 (3)0.006 (3)0.001 (2)
C100.073 (4)0.051 (4)0.059 (4)0.024 (3)0.032 (3)0.001 (3)
C110.125 (7)0.064 (3)0.058 (3)0.044 (4)0.046 (4)0.021 (3)
C120.067 (8)0.072 (9)0.062 (6)0.050 (7)0.011 (5)0.010 (5)
C130.055 (5)0.075 (6)0.057 (5)0.037 (4)0.015 (4)0.010 (4)
C140.044 (4)0.052 (4)0.040 (3)0.011 (3)0.015 (3)0.013 (2)
C9'0.030 (5)0.054 (8)0.040 (6)0.003 (4)0.008 (4)0.010 (5)
C10'0.045 (4)0.029 (4)0.048 (5)0.009 (3)0.001 (3)0.000 (3)
C11'0.060 (6)0.049 (4)0.069 (6)0.038 (4)0.008 (5)0.018 (4)
C12'0.091 (15)0.080 (16)0.072 (11)0.033 (11)0.038 (9)0.018 (9)
C13'0.055 (8)0.051 (6)0.060 (7)0.005 (6)0.030 (6)0.014 (4)
C14'0.053 (8)0.045 (5)0.056 (9)0.019 (5)0.010 (5)0.005 (5)
C150.0419 (9)0.0396 (8)0.0474 (10)0.0100 (7)0.0105 (7)0.0022 (7)
C160.0566 (11)0.0387 (9)0.0651 (13)0.0053 (8)0.0101 (10)0.0075 (9)
Geometric parameters (Å, º) top
Br1—C141.892 (5)C9—C141.381 (7)
Br1'—C14'1.883 (6)C10—C111.379 (7)
Cl1—C11.7025 (15)C10—H10A0.9300
Cl2—C161.7703 (18)C11—C121.385 (7)
O1—C151.2147 (18)C11—H11A0.9300
N1—C11.365 (2)C12—C131.346 (7)
N1—C81.3939 (19)C12—H12A0.9300
N1—C9'1.432 (6)C13—C141.404 (7)
N1—C91.444 (4)C13—H13A0.9300
C1—C21.374 (2)C9'—C10'1.3900
C2—C31.452 (2)C9'—C14'1.3900
C2—C151.463 (2)C10'—C11'1.3900
C3—C81.401 (2)C10'—H10B0.9300
C3—C41.405 (2)C11'—C12'1.3900
C4—C51.373 (3)C11'—H11B0.9300
C4—H40.92 (2)C12'—C13'1.3900
C5—C61.395 (3)C12'—H12B0.9300
C5—H51.007 (19)C13'—C14'1.3900
C6—C71.375 (3)C13'—H13B0.9300
C6—H60.969 (19)C15—C161.509 (2)
C7—C81.384 (2)C16—H16A0.98 (2)
C7—H70.85 (2)C16—H16B1.08 (2)
C9—C101.359 (7)
C1—N1—C8108.06 (12)C12—C11—H11A120.1
C1—N1—C9'128.6 (9)C13—C12—C11121.6 (4)
C8—N1—C9'122.6 (9)C13—C12—H12A119.2
C1—N1—C9126.0 (6)C11—C12—H12A119.2
C8—N1—C9125.9 (6)C12—C13—C14118.4 (5)
C9'—N1—C98.5 (10)C12—C13—H13A120.8
N1—C1—C2111.46 (13)C14—C13—H13A120.8
N1—C1—Cl1117.90 (11)C9—C14—C13120.3 (5)
C2—C1—Cl1130.61 (13)C9—C14—Br1117.9 (7)
C1—C2—C3105.22 (14)C13—C14—Br1121.7 (7)
C1—C2—C15130.08 (15)C10'—C9'—C14'120.0
C3—C2—C15124.70 (13)C10'—C9'—N1128.1 (11)
C8—C3—C4117.94 (16)C14'—C9'—N1111.9 (11)
C8—C3—C2107.47 (13)C9'—C10'—C11'120.0
C4—C3—C2134.58 (16)C9'—C10'—H10B120.0
C5—C4—C3118.80 (18)C11'—C10'—H10B120.0
C5—C4—H4124.5 (13)C12'—C11'—C10'120.0
C3—C4—H4116.7 (13)C12'—C11'—H11B120.0
C4—C5—C6121.70 (17)C10'—C11'—H11B120.0
C4—C5—H5119.5 (11)C11'—C12'—C13'120.0
C6—C5—H5118.8 (11)C11'—C12'—H12B120.0
C7—C6—C5121.01 (18)C13'—C12'—H12B120.0
C7—C6—H6119.6 (11)C12'—C13'—C14'120.0
C5—C6—H6119.4 (11)C12'—C13'—H13B120.0
C6—C7—C8117.03 (18)C14'—C13'—H13B120.0
C6—C7—H7125.0 (14)C13'—C14'—C9'120.0
C8—C7—H7118.0 (14)C13'—C14'—Br1'114.9 (9)
C7—C8—N1128.72 (15)C9'—C14'—Br1'123.5 (9)
C7—C8—C3123.51 (15)O1—C15—C2120.30 (15)
N1—C8—C3107.76 (13)O1—C15—C16121.46 (15)
C10—C9—C14120.2 (4)C2—C15—C16118.24 (13)
C10—C9—N1113.1 (9)C15—C16—Cl2112.50 (12)
C14—C9—N1126.6 (9)C15—C16—H16A109.1 (11)
C9—C10—C11119.7 (4)Cl2—C16—H16A110.2 (12)
C9—C10—H10A120.1C15—C16—H16B111.0 (11)
C11—C10—H10A120.1Cl2—C16—H16B106.4 (11)
C10—C11—C12119.8 (4)H16A—C16—H16B107.5 (16)
C10—C11—H11A120.1
C8—N1—C1—C20.4 (2)C9'—N1—C9—C14168 (10)
C9'—N1—C1—C2170.9 (8)C14—C9—C10—C110.2 (7)
C9—N1—C1—C2178.9 (6)N1—C9—C10—C11179.1 (11)
C8—N1—C1—Cl1177.68 (12)C9—C10—C11—C120.0 (9)
C9'—N1—C1—Cl17.2 (8)C10—C11—C12—C130.7 (9)
C9—N1—C1—Cl13.0 (6)C11—C12—C13—C141.2 (8)
N1—C1—C2—C31.0 (2)C10—C9—C14—C130.3 (7)
Cl1—C1—C2—C3176.78 (15)N1—C9—C14—C13178.4 (12)
N1—C1—C2—C15178.77 (16)C10—C9—C14—Br1176.1 (10)
Cl1—C1—C2—C153.4 (3)N1—C9—C14—Br15.2 (10)
C1—C2—C3—C81.20 (19)C12—C13—C14—C91.0 (7)
C15—C2—C3—C8178.58 (15)C12—C13—C14—Br1175.3 (11)
C1—C2—C3—C4179.79 (19)C1—N1—C9'—C10'100.8 (14)
C15—C2—C3—C40.4 (3)C8—N1—C9'—C10'68.5 (16)
C8—C3—C4—C50.0 (2)C9—N1—C9'—C10'176 (11)
C2—C3—C4—C5178.90 (19)C1—N1—C9'—C14'80.0 (9)
C3—C4—C5—C60.2 (3)C8—N1—C9'—C14'110.7 (8)
C4—C5—C6—C70.3 (3)C9—N1—C9'—C14'5 (9)
C5—C6—C7—C81.0 (3)C14'—C9'—C10'—C11'0.0
C6—C7—C8—N1179.49 (17)N1—C9'—C10'—C11'179.2 (19)
C6—C7—C8—C31.2 (3)C9'—C10'—C11'—C12'0.0
C1—N1—C8—C7179.00 (18)C10'—C11'—C12'—C13'0.0
C9'—N1—C8—C79.8 (8)C11'—C12'—C13'—C14'0.0
C9—N1—C8—C70.3 (6)C12'—C13'—C14'—C9'0.0
C1—N1—C8—C30.38 (18)C12'—C13'—C14'—Br1'166.3 (16)
C9'—N1—C8—C3170.8 (8)C10'—C9'—C14'—C13'0.0
C9—N1—C8—C3179.7 (6)N1—C9'—C14'—C13'179.3 (16)
C4—C3—C8—C70.8 (3)C10'—C9'—C14'—Br1'165.0 (17)
C2—C3—C8—C7178.44 (16)N1—C9'—C14'—Br1'14.2 (13)
C4—C3—C8—N1179.82 (15)C1—C2—C15—O1174.92 (18)
C2—C3—C8—N10.98 (18)C3—C2—C15—O15.4 (3)
C1—N1—C9—C1099.5 (8)C1—C2—C15—C165.1 (3)
C8—N1—C9—C1081.3 (8)C3—C2—C15—C16174.67 (17)
C9'—N1—C9—C1011 (9)O1—C15—C16—Cl24.9 (2)
C1—N1—C9—C1481.7 (8)C2—C15—C16—Cl2175.12 (13)
C8—N1—C9—C1497.4 (9)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C4—H4···O10.92 (2)2.502 (19)3.053 (2)118.5 (15)
C16—H16A···Cl10.98 (2)2.759 (19)3.1275 (18)103.0 (13)
C10—H10A···O1i0.932.453.302 (7)152
Symmetry code: (i) x+1, y+1, z+1.
 

Acknowledgements

This work was supported by the National Natural Science Foundation of China (grant Nos. 21472116 and 20972089) and a grant from the State Key Laboratory of Crystal Materials. This paper is dedicated to Professor Thomas C. W. Mak on the occasion of his 80th birthday.

References

First citationBatsikadze, G., Paulus, W., Kuo, M.-F. & Nitsche, M. A. (2013). Neuropsychopharmacology, 38, 2260–2267.  CrossRef CAS Google Scholar
First citationBruker (2005). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.  Google Scholar
First citationChaskar, A., Deokar, H., Padalkar, V., Phatangare, K. & Patil, S. K. (2010). J. Korean Chem. Soc. 54, 411–413.  CAS Google Scholar
First citationChen, F.-E. & Huang, J. (2005). Chem. Rev. 105, 4671–4706.  CrossRef CAS Google Scholar
First citationDeng, W.-Q. & Goddard, W. A. III (2004). J. Phys. Chem. B, 108, 8614–8621.  CrossRef CAS Google Scholar
First citationDiss, L. B., Robinson, S. D., Wu, Y., Fidalgo, S., Yeoman, M. S. & Patel, B. A. (2013). ACS Chem. Neurosci. 4, 879–887.  Web of Science CrossRef CAS PubMed Google Scholar
First citationDu, Y., Feng, M., Wang, Y.-N., Cheng, L., Wang, M. & Zhao, C.-J. (2014). Asian J. Chem. 26, 7245–7248.  Google Scholar
First citationFrisch, M. J., et al. (2003). GAUSSIAN03. Gaussian Inc., Pittsburgh, PA, USA.  Google Scholar
First citationGroom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179.  Web of Science CSD CrossRef IUCr Journals Google Scholar
First citationIshikawa, H., Colby, D. A. & Boger, D. L. (2008). J. Am. Chem. Soc. 130, 420–421.  Web of Science CrossRef PubMed CAS Google Scholar
First citationMessaoud, M. Y. A., Bentabed-Ababsa, G., Hedidi, M., Derdour, A., Chevallier, F., Halauko, Y. S., Ivashkevich, O. A., Matulis, V. E., Picot, L., Thiéry, V., Roisnel, T., Dorcet, V. & Mongin, F. (2015). Beilstein J. Org. Chem. 11, 1475–1485.  CrossRef CAS Google Scholar
First citationSheldrick, G. M. (2008). Acta Cryst. A64, 112–122.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationWang, L., Zhang, M., Jin, Y.-Y., Lu, Q. & Fang, Q. (2015). Acta Cryst. C71, 69–74.  Web of Science CSD CrossRef IUCr Journals Google Scholar
First citationWon, C., Shen, X., Mashiguchi, K., Zheng, Z., Dai, X., Cheng, Y., Kasahara, H., Kamiya, Y., Chory, J. & Zhao, Y. (2011). Proc. Natl Acad. Sci. USA, 108, 18518–18523.  CrossRef CAS Google Scholar
First citationZhang, M.-Z., Chen, Q. & Yang, G.-F. (2015). Eur. J. Med. Chem. 89, 421–441.  Web of Science CrossRef CAS PubMed Google Scholar

This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890
Follow Acta Cryst. E
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds