online submission instructions

The following instructions for submitting to Journal of Applied Crystallography are organized in question-and-answer format. You can read through the questions in order, or click on any of the questions to jump directly to the answer. When you're ready to continue, go back to the submissions home page.

Context sensitive help is available throughout the submission procedure by clicking on the help icons [info]

Please note: These instructions should be read together with the Notes for Authors, which give overall guidelines on submitting an article.  

Getting started Submission and review Getting help

Getting started

How do I begin submitting an article?

When you are ready to submit an article and have all the necessary items ready, you should go to the submissions home page to start the process. To submit your article, you will be asked to provide information on your submission, to upload your article and graphics files, and to select a Co-editor. The process is reasonably self-explanatory, and detailed help is provided along the way.

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What should I have ready before starting a new submission?

Before you begin submitting, you should have the following items ready:
  • your article prepared as a single file (see below for more information on files);
  • if your article reports a crystal structure, a CIF (crystallographic information file) of the crystallographic data (see below for more information on CIF), together with a structure factor or Rietveld data file in CIF format;
  • a high-resolution graphics file in TIFF, PostScript, encapsulated PostScript or HPGL format for each figure and chemical scheme, together with any other supplementary files you wish to submit;
  • your full contact details (e-mail address, mailing address, telephone and fax numbers);
  • details of the authors of your article (surnames, forenames and e-mail addresses of all authors);
  • other details of the article you are submitting (article title, abstract, language in which your article is written, article category);
  • suggestions for referees (surnames, forenames and e-mail addresses of possible referees);
  • any comments regarding your article in plain, unformatted text, ready to be copied and pasted (or typed directly) into the web site;
  • the location of your article file on your local filesystem.
In addition, it may be useful to have selected, in advance, Co-editors whose areas of expertise best match your article.

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What does the overall submission and review procedure involve?

The overall procedure involves six stages:
  • Stage 1
    You will be asked to provide your e-mail details and the article title, and to select your article category. You will also be asked to upload a single file of your article. Details of the file required are given below.
  • Stage 2
    You will be asked to give further details of your article (see above ). 
  • Stage 3
    You will be asked to upload graphics files and supplementary data for your article (see below ).
  • Stage 4
    You will be invited to select a Co-editor, from a list of those available, to coordinate the review of your article. Comments concerning your article and details of possible referees should be typed into the spaces provided.
  • Stage 5
    A PDF review document is generated from the file(s) you submit and you will be provided with a web address for accessing and viewing this document.

    Once your review document is created, the system will assign a Co-editor to your article. You will be given the contact details of this Co-editor and a Co-editor reference code. The reference code has two letters and four digits (e.g. au0165) and should be quoted in all subsequent communications with the Co-editor and the Editorial Office. You should keep a record of the web address for viewing your article and the Co-editor code of your article.

    The Co-editor will arrange for the review of your article and will inform you by e-mail of the outcome of the review. You may be asked to submit revised versions of your article (see below). Please note that revisions should only be submitted at the request of the Co-editor handling your article.
  • Stage 6
    Your submission is now complete and you will be returned to the home page for your article.

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Submission and review
 
What kinds of file may I submit?

For submission and refereeing we require the word processing and other source files for your article to be submitted. The files should be prepared according to the Notes for Authors. You may submit either (a) WORD or RTF files, or (b) LaTeX files.
 
WORD or RTF submissions:

At Stage 1, we require a WORD or RTF file of the text, tables and figure captions of your article to be uploaded. Note that .docx files are not currently supported.

At Stage 3, we request you to provide the following source files:
  • A high-resolution graphics file in TIFF, PostScript or encapsulated PostScript format for each figure and scheme
  • Files of any supplementary material that should accompany your publication
For each source file you will be asked to
  • Select the role of the file, its number and part number as applicable
  • Locate the file on your local system
  • Upload the file
You may overwrite an incorrectly uploaded file by uploading a replacement file with the same role, number and part number.

Once you have uploaded all your files, you should CONTINUE to the next stage. All files, including graphics files, will be automaically converted into a PDF review document by the submission system.

LaTeX submissions:

At Stage 1, we require one of the following files to be uploaded:
  • an Adobe Acrobat PDF file of the text, tables and figure captions of your article, or
  • a PostScript or encapsulated PostScript file of the text, tables and figure captions of your article
At Stage 3, we request you to provide source files as follows:
  • a LaTeX file of the text, tables and figure captions of your article
  • an associated BibTeX file (note that this file is optional, as we encourage authors to include the bibliography within the LaTeX file)
  • A high-resolution graphics file in TIFF, PostScript or encapsulated PostScript format for each figure and scheme
  • Files of any supplementary material that should accompany your publication
For each source file you will be asked to
  • Select the role of the file, its number and part number as applicable
  • Locate the file on your local system
  • Upload the file
You may overwrite an incorrectly uploaded file by uploading a replacement file with the same role, number and part number.

Once you have uploaded all your files, you should CONTINUE to the next stage. All files, including graphics files, will be automaically converted into a PDF review document by the submission system.

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Should I use a template to prepare my article?

Templates are available for the preparation of your article in WORD or LaTeX format. For refereeing purposes, please ensure that the file you prepare is in preprint format (single column, double spaced); graphics do not need to be included in the file as they will be appended by the submission system.

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How do I create a PDF file?

If you have prepared your article in LaTeX, a PDF file will be required at Stage 1. To create a high-quality PDF file, you will need the commercial product Adobe Acrobat (not to be confused with the free Acrobat Reader product, which only allows you to read PDF files). Alternatively, the freely available program AFPL Ghostscript may be used to create PDF files from PostScript or pdflatex may be used to convert LaTeX files to PDF.

Preparing a PDF file from LaTeX:
  1. Prepare the text in LaTeX.
     
  2. Use LaTeX to generate a PostScript file of the text and figures.
     
  3. Using Adobe Acrobat or AFPL Ghostscript, convert the PostScript file to PDF format.
     
  4. Alternatively, use pdflatex to convert your LaTeX file to PDF.
     
Once you have created your PDF, carefully review the article text and figures in the file. We recommend that you also review a printed copy of your PDF. Please try to ensure that your PDF does not exceed 3 MB in size.

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How do I prepare an enhanced figure?

A toolkit is available [info] which allows you to create one or more enhanced figures and their corresponding static figures. This application uses the CIF for your structure to produce a figure which you can manipulate as required. When you have completed your figure it can be saved and you will be supplied with a URL for viewing the enhanced figure and a high-resolution graphics file of the static figure. This URL and the corresponding static figure should be included in the article you submit to the journal. Once your article is accepted for publication, the static figure should be uploaded as a source file (see above for details of files required to complete a submission) and the URL of the enhanced figure should be pasted into the appropriate form in the upload page.

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Should I submit supplementary data?

If your article reports a crystal structure, a CIF (Crystallographic Information File) of all the crystallographic data will be required for the review process. You will be asked to upload your CIF during the submission procedure. You should ensure that at least a basic structural check is run on the final version of your CIF prior to submission. Also, a separate structure factor or Rietveld data file in CIF format should be submitted for each structure reported.

Other supplementary materials (e.g. videos) may be submitted; for a full list of allowed file types, click here.

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What do I need to do about copyright?

When your article has been successfuly uploaded, a Co-editor reference code assigned and a PDF review document created, you will be sent an e-mail to confirm that your article has entered the review stage. You will also be sent a Transfer of Copyright agreement. You should complete and sign this agreement and return it to the Editorial Office either by fax (+44 1244 314888) or by e-mail (copyrightj@iucr.org). The e-mail should include the Co-editor reference code in the Subject line.

If you have any questions about copyright, please contact support@iucr.org.

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Where should I put my response to a review of my article?

You should generally respond to review comments by e-mailing the Co-editor handling your article; if your article has been revised it should also be re-uploaded at this stage, see below. Short responses to review comments may be pasted or typed into the space provided on the re-upload form.

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How do I submit a revised article?

To upload a revised version of your article following review comments, you should use the web address supplied to you during the initial submission procedure. The Co-editor will instruct you as to which files they require to be revised. In some circumstances the Co-editor may elect to revise your article and ask you to review the revised artilce at the web address for your article. Revised graphics files and supplementary materials may also be requested at this stage.

Please note: revisions should be submitted only at the specific request of the Co-editor handling your article.

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Getting help
 
What are some common pitfalls I should avoid?
  • Make sure that you follow the specific instructions for WORD, RTF and LaTeX submissions. Failure to follow the instructions may result in an incomplete review document being sent to the Co-editor.

  • Check your article fully before submitting it. If you find problems after the submission is complete, you will be required to resubmit your article online. Any such changes could delay the processing of your article.
     
  • Make sure you have not included a covering letter in the article files you submit. Any information relevant to your submission should be pasted or typed into the space provided on the submission web page. It can be plain text only.
     
  • Be sure to use only the supported file formats. Your submission will not be processed if you use any other formats, and you will need to resubmit it. Note that .docx is not currently supported.
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What tools are available to help prepare my article?

A number of tools are available to help with the preparation of structural articles:
  • Checking your structure. Your structure can be checked using the checkCIF/PLATON service. You should ensure that at least a basic structural check is run on the final version of your CIF prior to submission.
     
  • Editing your CIF. A CIF editor is available from the Cambridge Structural Database for preparing your CIF.  
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What if the Co-editor I wish to submit to is unavailable?

If you have a preference for a particular Co-editor, and that Co-editor is not available when you submit your article, you should either continue with your submission by choosing another Co-editor whose areas of expertise best match your article, or you may contact support@iucr.org to see when the Co-editor will next be available. Likewise, if you wish to submit a series of related papers to the same Co-editor, please contact support@iucr.org before starting your submissions.

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What is an IUCr ID?

Your IUCr ID is your user name for all IUCr online services. The International Union of Crystallography has brought several of its online services for users, including the World Directory of Crystallographers and e-mail alerting for IUCr journals (Crystallography Journals Online), under a single registration system. With this system, each user needs to register information such as their name and e-mail address only once, and can simply and easily keep their own information up to date.

Registration is simple, with only a small amount of information required, although users who wish to be included in the World Directory of Crystallographers should provide contact and biographical information that is as complete as possible. Once registered, each user may use their IUCr ID and password at any time, for instance to log in to update their details for the World Directory of Crystallographers, to change e-mail addresses and the e-mail alerts received at each address, and to use tools such as publBio.

If you are already registered (if you are already in the World Directory of Crystallographers), click here to search for your IUCr ID.

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What should I do if I get stuck?

You will find detailed help links [info]  throughout the submission pages, and you can use any of these links without stopping the submission. If you are having more serious problems, you should contact support@iucr.org.

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