research papers
The low-temperature and high-pressure crystal structures of cyclobutanol (C4H7OH)
aSchool of Physics and Astronomy, The University of Edinburgh, King's Buildings, West Mains Road, Edinburgh EH9 3JZ, Scotland, bCentre for Science at Extreme Conditions, The University of Edinburgh, King's Buildings, West Mains Road, Edinburgh EH9 3JZ, Scotland, and cSchool of Chemistry, The University of Edinburgh, King's Buildings, West Mains Road, Edinburgh EH9 3JJ, Scotland
*Correspondence e-mail: d.r.allan@ed.ac.uk
The low-temperature and high-pressure crystal structures of cyclobutanol (C4H7OH) have been determined using single-crystal X-ray diffraction techniques. At temperatures below 220 K, cyclobutanol crystallizes in the Aba2 (Z′ = 2) and its is composed of pseudo-threefold hydrogen-bonded molecular catemers [assigned as in graph-set notation], which lie parallel to the crystallographic a axis. At a pressure of 1.3 GPa, the crystal symmetry changes to Pna21 (Z′ = 1) and the molecular catemers [expressed as C(2) in graph-set notation] adopt a pseudo-twofold arrangement. This structural behaviour is in agreement with our previous observations for phenol and its halogenated derivatives 2-chlorophenol and 4-fluorophenol, where pressure was found to favour a molecular packing more closely associated with small rather than that of relatively bulky In addition, an examination of the molecular coordination environment in the low-temperature and high-pressure structures of cyclobutanol reveals that the change in structure on application of pressure appears to be driven by the molecules assuming a packing arrangement which more closely resembles that adopted in hard-sphere structures.
Keywords: low-temperature and high-pressure structure; X-ray diffraction; graph-set notation; molecular packing.
1. Introduction
In the mono-alcohols (ROH) there is competition between the packing requirements of the relatively bulky R group and the demand for the small hydroxyl groups to be sufficiently close for hydrogen bonding to occur. Brock & Duncan (1994) have described the general features of the packing motifs adopted by mono-alcohols. They found that if the molecules containing the hydroxyl groups are relatively `thin' (by Brock and Duncan's terminology) then they can form catemers where the molecules are symmetry-related by either a glide plane or a 21-screw axis so that the molecules form an approximately coplanar alternating sequence about the central chain of hydrogen bonds. For bulkier R groups, often prohibits the molecules adopting this simple arrangement and, instead, these systems often form chains about three-, four- or sixfold screw axes, or adopt crystal structures with more than one molecule in the If the R group is particularly bulky, then the molecules may no longer form hydrogen-bonded chains or catemers, but cyclic dimer, trimer, tetramer or hexamer rings can be created.
In our recent high-pressure structural studies of phenol (Allan et al., 2002) and its halogenated derivatives 2-chlorophenol and 4-fluorophenol (Oswald et al., 2005), we have observed a clear change in the nature of the R-group packing behaviour. All three systems form crystal structures at ambient pressure, characterized by the formation of hydrogen-bonding schemes associated with bulky R groups. Both phenol and 2-chlorophenol form crystal structures where the molecules are hydrogen bonded into pseudo-threefold chains. The ambient-pressure structure of 4-fluorophenol has a markedly different packing arrangement with the molecules hydrogen bonding to form hexamer rings about threefold rotoinversion sites. After the application of pressure, however, all three systems form crystal structures with the molecules disposed along chains that are generated by 21 screw axes. In effect, pressure has transformed the packing behaviour of the phenyl and halophenyl groups from having characteristics more closely associated with bulky groups to those more typical of small groups.
Here we report the 4H7OH) along with the of its low-temperature phase, which, to the best of our knowledge, has not been reported previously. The low-temperature (space group Aba2, Z′ = 2) is composed of pseudo-threefold hydrogen-bonded molecular catemers which lie parallel to the crystallographic a-axis. At high-pressure, the crystal symmetry changes to Pna21 (Z′ = 1) and the molecular catemers, which are generated by the a-glide symmetry, adopt a pseudo-twofold arrangement. This structural behaviour parallels what we have observed previously for phenol and 2-chlorophenol and is in agreement with the favouring of a small-group packing behaviour under pressure.
of the high-pressure phase of cyclobutanol (C2. Experimental
Cyclobutanol (C4H8O) is a clear, colourless liquid with a melting point of 221 K and a boiling point of 395 K. It is a secondary alcohol which consists of four sp3 hybridized C atoms arranged in a puckered four-membered ring. The puckering of the ring increases the angle strain in the molecule, but relieves the eclipsing interactions of adjacent C—H bonds.
2.1. (DSC)
Before proceeding with structure characterization using single-crystal X-ray diffraction methods, a survey of the low-temperature phase behaviour of cyclobutanol was undertaken using a Perkin-Elmer Pyris differential scanning calorimeter DSC-1. The sample of cyclobutanol (99.5 %, obtained from Sigma-Aldrich) was contained in a sealed aluminium pan. Fig. 1 shows that super-cooling occurs in the sample and the liquid does not crystallize until it is warmed where the exothermic crystallization peak occurs at 180 K (event C in Fig. 1). The small endothermic event which occurs in this first scan at approximately 138 K (event B in Fig. 1) is a in which some degree of ordering occurs in the glassy phase. This does not occur in the polycrystalline material. Melting occurs at 221 K (event A in Fig. 1). The DSC experiment showed that no phase change occurs in the material down to temperatures as low as 105 K after initial crystallization. Therefore, a single crystal could be grown at a temperature just below the 221 K melting point and then safely cooled for subsequent X-ray data collection.
2.2. Low-temperature crystal growth of phase I
Liquid cyclobutanol was loaded into a capillary of 0.33 mm diameter. This was attached to a goniometer head and mounted on a BRUKER SMART-APEX (Siemens, 1993) diffractometer, equipped with an Oxford Cryosystems low-temperature device and an OHCD laser-assisted crystallization device (Boese & Nussbaumer, 1994). The sample was cooled to just below the melting point. A solid–liquid equilibrium was established at approximately 1.5 W laser power and a crystal was grown by applying the same laser power along approximately 0.5 mm of the capillary over a duration of 30 min. The laser power was subsequently reduced to 0 W over a further period of 20 min at the end of the cycle.
A hemisphere of data was collected in the range 2θ < 52° and the resulting diffraction pattern was indexed using GEMINI (Sparks, 1999) and integrated with SAINT (Siemens, 1995). An absorption correction was applied using SADABS (Sheldrick, 2001). The structure was initially solved by in the C2 and the symmetry was later increased to Aba2 after analysis with the program MISSYM, as incorporated into PLATON (Spek, 2001). The structure was refined by full-matrix least-squares against |F2| (SHELXTL; Sheldrick, 2001). Initially, the H atoms were located using difference Fourier maps and, in subsequent cycles of their positions were idealized and constrained geometrically. All non-H atoms were modeled with anisotropic displacement parameters and, as the data were of sufficient quality, the H atoms could be refined isotropically. The sample was then cooled to 100 K and a second set of intensity data were collected, following the same strategy as that employed for the 220 K data set. details and statistics are shown in Table 1.1
2.3. High-pressure crystal growth of phase II
Liquid cyclobutanol was loaded and pressurized in a Merrill–Bassett diamond–anvil cell (Merrill & Bassett, 1974) equipped with 600 µm culet diamonds and a tungsten gasket. After the nucleation of several crystallites the temperature was cycled close to the melting curve, in order to reduce the number of crystallites. Finally, a single crystal was obtained at approximately 1.3 GPa that entirely filled the 175 µm gasket hole.
Data were collected with the cell mounted in a single orientation and the subsequent diffraction pattern was indexed with the program GEMINI (Sparks, 1999). Data integration (to 2θ = 45°) was performed using SAINT (Siemens, 1995) with dynamic masking to account for the shading from the steel body of the diamond-anvil cell. The program SHADE (Parsons, 2004) was used to take account of absorption effects due to the pressure cell and further systematic errors were treated using SADABS (Sheldrick, 2001) before merging in SORTAV (Blessing, 1997). More detailed data collection and processing procedures used in our laboratory have been described in Dawson et al. (2004). Structure solution and procedures were similar to those outlined for the low-temperature data sets, with the exception that the H-atom positions could not be observed in the Fourier difference maps and they had to be located and constrained in the using geometrical considerations. The final are listed in Table 1.
3. Results
3.1. The low-temperature phase I crystal structure
The a axis. The two molecules in the are hydrogen bonded together to form a single section of the chain and the b-glide symmetry links these sections in pairs to construct the complete catemer. These catemers are not strictly helical in nature, as helices are not supported by the b glide. The chains are assigned the graph-set notation – having two unique hydrogen-bond donors and two unique hydrogen-bond acceptors involving a total of four atoms. Fig. 2 shows an individual hydrogen-bonded chain, while the complete structure is shown in projection along the a axis in Fig. 3. From this a-axis projection, the pseudo-threefold nature of the chains is apparent and it can also be observed that the of molecules in neighbouring chains lie on top of one another to form an intertwining arrangement. The chains themselves are stacked in layers perpendicular to the crystallographic b axis and, in the as a whole, each molecule occupies a volume of 109.4 (1) Å3 at 220 K and 108.4 (1) Å3 at 100 K (a difference of 0.9%).
of phase I of cyclobutanol has two molecules in the and it is characterized by the presence of binary hydrogen-bonded chains of cyclobutanol molecules aligned parallel to the crystallographic3.2. The high-pressure phase II crystal structure
The C(2) in graph-set notation – the repeating unit contains one hydrogen-bond donor and one hydrogen-bond acceptor. At a pressure of 1.3 GPa, each molecule occupies 97.2 (1) Å3 and comparing this to the volume of the low-temperature phase gives a 10.3% reduction in volume with respect to the 100 K structure and an 11.2% reduction in volume compared with the 220 K structure.
of phase II of cyclobutanol has one molecule in the that acts dually as a hydrogen-bond donor and a hydrogen-bond acceptor. Consequently, there is one unique hydrogen bond in the structure and this links neighbouring molecules to form hydrogen-bonded chains expressed asFig. 4 shows the hydrogen-bonded chains of cyclobutanol molecules. The chains involve a repeating unit of two molecules related by the a glide symmetry. The wave-like chains are aligned in layers stacked along the c axis, as shown in Fig. 5 and, unlike the chains in the low-temperature phase, the packing does not result in an intertwining of the alkyl groups.
4. Discussion and comparison of the low-temperature and high-pressure phases
Perhaps the most significant difference between the low-temperature and the high-pressure polymorphs is the reduction in molecular volume. At ambient pressure and 220 K, each molecule occupies 108.4 (1) Å3 compared with 96.8 (1) Å3 at room temperature and 1.3 GPa, a decrease of approximately 10%. It would naturally be assumed that this reduction in molecular volume with pressure would be accommodated by the intermolecular contacts and that the hydrogen bonds should exhibit a strong pressure effect. This does not appear to be the case and the donor–acceptor distances for the low-temperature phase are somewhat shorter than those in the high-pressure phase, see Table 2. Although this observation is perhaps counter-intuitive, a similar affect also been observed on comparison of the crystal structures of the low-temperature and high-pressure phases of phenol (Allan et al., 2002) and of the halophenols (Oswald et al., 2005). It was suggested that the reason for the increase in the hydrogen-bond distance with pressure for the was due, principally, to steric effects. The observation that there is a similar effect in cyclobutanol provides further evidence that this lengthening of the hydrogen bond is linked to steric considerations.
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It is interesting to note that the apparent increase in hydrogen-bond length between the high-pressure and low-temperature phases of cyclobutanol, phenol and the halophenols is paralleled by strikingly similar changes to the arrangement of the molecules themselves within the hydrogen-bonded chains. The a-glide which generates the hydrogen-bonded molecular chains in both the low-temperature, Aba2, and high-pressure, Pna21, crystal structures, is basically a twofold Brock & Duncan (1994) have demonstrated that small molecules pack along 21 screw axes or glides, and hence the high-pressure behaviour of cyclobutanol is typical of them. An analogous structural transformation is also observed in phenol, where the same topological change from pseudo-threefold to pseudo-twofold occurs between the low-temperature and high-pressure phases, respectively (where both polymorphs have the same P21 space group). This trend is also observed in three halophenol systems studied by Oswald et al. (2005). Although they form crystal structures at ambient pressure which are typical of molecules containing bulky R groups, at high pressure they adopt crystal structures with the molecules disposed along chains that are generated by 21 screw axes.
Finally, given that the reduction in molecular volume at pressure cannot be attributed to the shortening of intermolecular hydrogen bonding, and indeed the converse appears to be the case, it would be valuable, therefore, to compare other structural features, such as the molecular packing, as this is indicative of overall intermolecular contacts. The topological characteristics of packing in molecular crystal structures have been studied by Blatov and co-workers (Blatov et al., 2000). The coordination environment of a molecule in a can be visualized using a Voronoi–Dirichlet polyhedron or VDP (Peresypkina & Blatov, 2000a,b). The greater efficiency of packing in cyclobutanol-II (the high pressure phase) can be gauged by comparison of the lattice VDPs of the two phases. In both phases the molecular (MCN) is 14. Fourteen is the most commonly observed value in molecular structures and ideally the VDP is a cuboctahedron, as observed in the body-centred cubic structure of tungsten (Fig. 6a); this VDP is characterized by a covering coefficient (Peresypkina & Blatov, 2000a) of 1.46. The VDPs of the two independent molecules in cyclobutanol-I are shown in Figs. 6(b) and (c), and they clearly correspond to distorted versions of the cuboctahedron shown in Fig. 6(a). The covering coefficients are 1.98 and 2.00. The VDP of cyclobutanol-II (Fig. 6d) is still a distorted version of Fig. 6(a), but the distortion is less than for phase I, with a covering coefficient of 1.69. The change in the of cyclobutanol on application of pressure can thus be considered to be driven by the adoption of a packing arrangement which more closely resembles that adopted in hard-sphere structures.
5. Conclusions
The structural changes exhibited between the low-temperature phase of cyclobutanol and its corresponding high-pressure phase are strongly paralleled by the changes we have observed previously between the low-temperature and high-pressure phases of phenol and its halogenated derivatives 2-chlorophenol and 4-fluorophenol (Oswald et al., 2005). The general structural change accompanying the helical to coplanar structural rearrangement of the molecules in these systems results in a marked improvement in packing efficiency and would appear to be driven by the of the phenyl groups. For cyclobutanol, an analogous affect appears to be influencing the high-pressure structural behaviour as the change of structure appears to be in response to the molecules adopting an arrangement analogous to the packing of hard spheres.
Supporting information
10.1107/S0108768105019191/ws5024sup1.cif
contains datablocks cb220k, cb100k, cbutan. DOI:Structure factors: contains datablock . DOI: 10.1107/S0108768105019191/ws5024cb220Ksup2.hkl
Structure factors: contains datablock . DOI: 10.1107/S0108768105019191/ws5024cb100Ksup3.hkl
Structure factors: contains datablock . DOI: 10.1107/S0108768105019191/ws5024cbutansup4.hkl
Data collection: BRUKER-SMART for cb220k, cbutan; Bruker SMART for cb100k. Cell
BRUKER-SMART for cb220k, cbutan; Bruker SMART for cb100k. Data reduction: BRUKER-SAINT for cb220k, cbutan; Bruker SAINT for cb100k. Program(s) used to solve structure: BRUKER-SHELXTL for cb220k; Bruker SHELXTL for cb100k; SHELXS97 (Sheldrick, 1990) for cbutan. For all compounds, program(s) used to refine structure: SHELXL97 (Sheldrick, 1997). Molecular graphics: BRUKER-SHELXTL for cb220k, cbutan; Bruker SHELXTL for cb100k. Software used to prepare material for publication: BRUKER-SHELXTL for cb220k, cbutan; Bruker SHELXTL for cb100k.C4H8O | Dx = 1.095 Mg m−3 |
Mr = 72.10 | Melting point: 220 K |
Orthorhombic, Aba2 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.3789 (16) Å | Cell parameters from 2278 reflections |
b = 13.658 (2) Å | θ = 3–26° |
c = 13.661 (2) Å | µ = 0.08 mm−1 |
V = 1749.9 (5) Å3 | T = 220 K |
Z = 16 | Cylinder, colourless |
F(000) = 640 | 0.50 × 0.33 × 0.33 mm |
CCD-area detector diffractometer | 918 independent reflections |
Radiation source: fine-focus sealed tube | 824 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
phi and ω scans | θmax = 26.4°, θmin = 3.0° |
Absorption correction: multi-scan SADABS | h = −11→11 |
Tmin = 0.693, Tmax = 1.000 | k = −17→14 |
4279 measured reflections | l = −14→17 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | Riding |
R[F2 > 2σ(F2)] = 0.042 | w = 1/[σ2(Fo2) + (0.0702P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.104 | (Δ/σ)max = 0.051 |
S = 1.07 | Δρmax = 0.17 e Å−3 |
918 reflections | Δρmin = −0.17 e Å−3 |
108 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.013 (2) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
Secondary atom site location: difference Fourier map | Absolute structure parameter: −10 (10) |
C4H8O | V = 1749.9 (5) Å3 |
Mr = 72.10 | Z = 16 |
Orthorhombic, Aba2 | Mo Kα radiation |
a = 9.3789 (16) Å | µ = 0.08 mm−1 |
b = 13.658 (2) Å | T = 220 K |
c = 13.661 (2) Å | 0.50 × 0.33 × 0.33 mm |
CCD-area detector diffractometer | 918 independent reflections |
Absorption correction: multi-scan SADABS | 824 reflections with I > 2σ(I) |
Tmin = 0.693, Tmax = 1.000 | Rint = 0.046 |
4279 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | Riding |
wR(F2) = 0.104 | Δρmax = 0.17 e Å−3 |
S = 1.07 | Δρmin = −0.17 e Å−3 |
918 reflections | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
108 parameters | Absolute structure parameter: −10 (10) |
1 restraint |
Experimental. Low melting point material contained in a thin walled glass capilliary |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. 061_ALERT_3_B Tmax/Tmin Range Test RR' too Large ·········.. 0.70 062_ALERT_4_C Rescale T(min) & T(max) by ··················. 0.98 SADABS corrects for all systematic errors that lead to disparities in the intensities of equivalent data. It is possible that the larger than expected range of transmission is accounted for by crystal decay or absorption by the mounting fibre. 028_ALERT_3_C _diffrn_measured_fraction_theta_max Low ···.. 0.99 125_ALERT_4_C No _symmetry_space_group_name_Hall Given ···.. ? No action taken. 089_ALERT_3_C Poor Data / Parameter Ratio ·················· 8.50 223_ALERT_4_C Large Solvent/Anion H Ueq(max)/Ueq(min). 3.26 Ratio This is discussed. |
x | y | z | Uiso*/Ueq | ||
C11 | 0.0552 (2) | 0.22614 (18) | 0.79482 (17) | 0.0450 (5) | |
H11 | 0.1480 | 0.2031 | 0.7692 | 0.027 (5)* | |
O1 | 0.06454 (17) | 0.23641 (13) | 0.89748 (12) | 0.0510 (5) | |
H1 | −0.0049 | 0.2682 | 0.9177 | 0.058 (8)* | |
C12 | −0.0639 (3) | 0.16372 (19) | 0.75122 (18) | 0.0510 (6) | |
H122 | −0.1509 | 0.1619 | 0.7909 | 0.049 (6)* | |
H121 | −0.0339 | 0.0977 | 0.7322 | 0.067 (8)* | |
C13 | −0.0696 (3) | 0.23728 (19) | 0.66552 (17) | 0.0527 (6) | |
H131 | −0.0121 | 0.2181 | 0.6088 | 0.084 (10)* | |
H132 | −0.1665 | 0.2556 | 0.6458 | 0.070 (10)* | |
C14 | 0.0032 (3) | 0.31213 (17) | 0.73273 (19) | 0.0516 (6) | |
H141 | 0.0799 | 0.3492 | 0.7011 | 0.088 (11)* | |
H142 | −0.0632 | 0.3558 | 0.7668 | 0.071 (9)* | |
C21 | 0.3225 (2) | 0.08035 (17) | 0.98968 (17) | 0.0447 (5) | |
H21 | 0.4209 | 0.0613 | 1.0079 | 0.052 (7)* | |
O2 | 0.32034 (15) | 0.18196 (10) | 0.97174 (12) | 0.0429 (4) | |
H2 | 0.2387 | 0.1988 | 0.9553 | 0.044 (7)* | |
C22 | 0.2203 (4) | 0.03520 (19) | 1.0629 (2) | 0.0633 (8) | |
H221 | 0.1285 | 0.0691 | 1.0678 | 0.079 (10)* | |
H222 | 0.2619 | 0.0240 | 1.1278 | 0.102 (13)* | |
C23 | 0.2176 (3) | −0.05606 (19) | 0.9972 (2) | 0.0662 (8) | |
H231 | 0.2861 | −0.1068 | 1.0164 | 0.092 (12)* | |
H232 | 0.1222 | −0.0838 | 0.9876 | 0.087 (11)* | |
C24 | 0.2680 (3) | 0.00845 (19) | 0.9134 (2) | 0.0619 (7) | |
H241 | 0.1907 | 0.0342 | 0.8726 | 0.052 (7)* | |
H242 | 0.3432 | −0.0211 | 0.8733 | 0.100 (13)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C11 | 0.0425 (11) | 0.0584 (13) | 0.0339 (10) | 0.0071 (9) | 0.0023 (9) | 0.0018 (10) |
O1 | 0.0439 (9) | 0.0737 (11) | 0.0352 (8) | 0.0145 (7) | −0.0070 (6) | 0.0006 (7) |
C12 | 0.0602 (14) | 0.0475 (11) | 0.0452 (12) | 0.0016 (11) | −0.0058 (10) | −0.0004 (10) |
C13 | 0.0596 (16) | 0.0679 (15) | 0.0307 (11) | 0.0069 (11) | −0.0005 (10) | 0.0017 (10) |
C14 | 0.0575 (14) | 0.0542 (13) | 0.0430 (11) | −0.0030 (11) | −0.0011 (10) | 0.0093 (10) |
C21 | 0.0392 (11) | 0.0412 (11) | 0.0537 (14) | 0.0060 (9) | −0.0051 (9) | −0.0023 (9) |
O2 | 0.0395 (8) | 0.0408 (8) | 0.0484 (8) | 0.0003 (6) | −0.0048 (7) | −0.0002 (7) |
C22 | 0.088 (2) | 0.0492 (13) | 0.0525 (15) | −0.0048 (13) | 0.0046 (13) | 0.0053 (11) |
C23 | 0.0778 (19) | 0.0397 (12) | 0.081 (2) | −0.0025 (12) | 0.0061 (16) | −0.0025 (13) |
C24 | 0.0779 (18) | 0.0505 (13) | 0.0572 (15) | −0.0032 (13) | 0.0093 (13) | −0.0137 (11) |
C11—O1 | 1.412 (3) | C21—O2 | 1.409 (3) |
C11—C12 | 1.526 (4) | C21—C22 | 1.517 (4) |
C11—C14 | 1.529 (3) | C21—C24 | 1.520 (3) |
C11—H11 | 0.9900 | C21—H21 | 0.9900 |
O1—H1 | 0.8300 | O2—H2 | 0.8300 |
C12—C13 | 1.544 (3) | C22—C23 | 1.536 (4) |
C12—H122 | 0.9800 | C22—H221 | 0.9800 |
C12—H121 | 0.9800 | C22—H222 | 0.9800 |
C13—C14 | 1.534 (4) | C23—C24 | 1.520 (4) |
C13—H131 | 0.9800 | C23—H231 | 0.9800 |
C13—H132 | 0.9800 | C23—H232 | 0.9800 |
C14—H141 | 0.9800 | C24—H241 | 0.9800 |
C14—H142 | 0.9800 | C24—H242 | 0.9800 |
O1—C11—C12 | 119.3 (2) | O2—C21—C22 | 120.4 (2) |
O1—C11—C14 | 119.6 (2) | O2—C21—C24 | 120.8 (2) |
C12—C11—C14 | 88.81 (18) | C22—C21—C24 | 88.68 (19) |
O1—C11—H11 | 109.2 | O2—C21—H21 | 108.4 |
C12—C11—H11 | 109.2 | C22—C21—H21 | 108.4 |
C14—C11—H11 | 109.2 | C24—C21—H21 | 108.4 |
C11—O1—H1 | 109.5 | C21—O2—H2 | 109.5 |
C11—C12—C13 | 87.59 (18) | C21—C22—C23 | 87.4 (2) |
C11—C12—H122 | 114.1 | C21—C22—H221 | 114.1 |
C13—C12—H122 | 114.1 | C23—C22—H221 | 114.1 |
C11—C12—H121 | 114.1 | C21—C22—H222 | 114.1 |
C13—C12—H121 | 114.1 | C23—C22—H222 | 114.1 |
H122—C12—H121 | 111.2 | H221—C22—H222 | 111.3 |
C14—C13—C12 | 87.96 (18) | C24—C23—C22 | 87.98 (19) |
C14—C13—H131 | 114.0 | C24—C23—H231 | 114.0 |
C12—C13—H131 | 114.0 | C22—C23—H231 | 114.0 |
C14—C13—H132 | 114.0 | C24—C23—H232 | 114.0 |
C12—C13—H132 | 114.0 | C22—C23—H232 | 114.0 |
H131—C13—H132 | 111.2 | H231—C23—H232 | 111.2 |
C11—C14—C13 | 87.83 (18) | C23—C24—C21 | 87.9 (2) |
C11—C14—H141 | 114.0 | C23—C24—H241 | 114.0 |
C13—C14—H141 | 114.0 | C21—C24—H241 | 114.0 |
C11—C14—H142 | 114.0 | C23—C24—H242 | 114.0 |
C13—C14—H142 | 114.0 | C21—C24—H242 | 114.0 |
H141—C14—H142 | 111.2 | H241—C24—H242 | 111.2 |
C4H8O | Dx = 1.105 Mg m−3 Dm = 0 Mg m−3 Dm measured by not measured |
Mr = 72.10 | Melting point: 220 K |
Orthorhombic, Aba2 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.3312 (15) Å | Cell parameters from 3363 reflections |
b = 13.642 (2) Å | θ = 3.8–28.4° |
c = 13.619 (2) Å | µ = 0.08 mm−1 |
V = 1733.7 (5) Å3 | T = 100 K |
Z = 16 | Cylinder, colourless |
F(000) = 640 | 0.50 × 0.33 × 0.33 mm |
CCD area detector diffractometer | 1093 independent reflections |
Radiation source: fine-focus sealed tube | 922 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.051 |
phi and ω scans | θmax = 28.6°, θmin = 3.0° |
Absorption correction: multi-scan Ref: SADABS | h = −12→12 |
Tmin = 0.766, Tmax = 1.000 | k = −17→14 |
5003 measured reflections | l = −17→15 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | Riding |
R[F2 > 2σ(F2)] = 0.047 | w = 1/[σ2(Fo2) + (0.0649P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.106 | (Δ/σ)max < 0.001 |
S = 1.00 | Δρmax = 0.25 e Å−3 |
1093 reflections | Δρmin = −0.22 e Å−3 |
108 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.0080 (14) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
Secondary atom site location: difference Fourier map | Absolute structure parameter: −10 (10) |
C4H8O | V = 1733.7 (5) Å3 |
Mr = 72.10 | Z = 16 |
Orthorhombic, Aba2 | Mo Kα radiation |
a = 9.3312 (15) Å | µ = 0.08 mm−1 |
b = 13.642 (2) Å | T = 100 K |
c = 13.619 (2) Å | 0.50 × 0.33 × 0.33 mm |
CCD area detector diffractometer | 1093 independent reflections |
Absorption correction: multi-scan Ref: SADABS | 922 reflections with I > 2σ(I) |
Tmin = 0.766, Tmax = 1.000 | Rint = 0.051 |
5003 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | Riding |
wR(F2) = 0.106 | Δρmax = 0.25 e Å−3 |
S = 1.00 | Δρmin = −0.22 e Å−3 |
1093 reflections | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
108 parameters | Absolute structure parameter: −10 (10) |
1 restraint |
Experimental. Low melting point sample - liquid loaded into a thin walled glass capilliary |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. 061_ALERT_3_C Tmax/Tmin Range Test RR' too Large ·········.. 0.78 062_ALERT_4_C Rescale T(min) & T(max) by ··················. 0.98 SADABS corrects for all systematic errors that lead to disparities in the intensities of equivalent data. It is possible that the larger than expected range of transmission is accounted for by crystal decay or absorption by the mounting fibre. 125_ALERT_4_C No _symmetry_space_group_name_Hall Given ···.. No action taken. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C11 | 0.0545 (3) | 0.22494 (19) | 0.79351 (17) | 0.0293 (5) | |
H11 | 0.1477 | 0.2006 | 0.7666 | 0.020 (6)* | |
O1 | 0.06638 (17) | 0.23508 (13) | 0.89729 (12) | 0.0331 (4) | |
H1 | −0.0037 | 0.2673 | 0.9186 | 0.044 (8)* | |
C12 | −0.0687 (3) | 0.16276 (19) | 0.75094 (17) | 0.0316 (5) | |
H122 | −0.1562 | 0.1620 | 0.7920 | 0.043 (8)* | |
H121 | −0.0401 | 0.0956 | 0.7316 | 0.036 (7)* | |
C13 | −0.0742 (3) | 0.23692 (18) | 0.66429 (17) | 0.0332 (6) | |
H131 | −0.0174 | 0.2167 | 0.6063 | 0.050 (9)* | |
H132 | −0.1724 | 0.2566 | 0.6452 | 0.043 (9)* | |
C14 | 0.0032 (3) | 0.31201 (18) | 0.73171 (18) | 0.0320 (5) | |
H141 | 0.0813 | 0.3485 | 0.6989 | 0.052 (9)* | |
H142 | −0.0624 | 0.3570 | 0.7669 | 0.040 (8)* | |
C21 | 0.3245 (2) | 0.08065 (18) | 0.99115 (17) | 0.0286 (5) | |
H21 | 0.4234 | 0.0614 | 1.0118 | 0.039 (8)* | |
O2 | 0.32292 (16) | 0.18252 (11) | 0.97302 (12) | 0.0281 (4) | |
H2 | 0.2400 | 0.1998 | 0.9563 | 0.042 (8)* | |
C22 | 0.2170 (3) | 0.03517 (18) | 1.06350 (18) | 0.0380 (6) | |
H221 | 0.1237 | 0.0695 | 1.0664 | 0.045 (8)* | |
H222 | 0.2563 | 0.0239 | 1.1301 | 0.067 (10)* | |
C23 | 0.2171 (3) | −0.05692 (19) | 0.9973 (2) | 0.0408 (7) | |
H231 | 0.2854 | −0.1083 | 1.0183 | 0.043 (8)* | |
H232 | 0.1206 | −0.0848 | 0.9855 | 0.052 (8)* | |
C24 | 0.2725 (3) | 0.00793 (18) | 0.9131 (2) | 0.0387 (6) | |
H241 | 0.3506 | −0.0222 | 0.8743 | 0.057 (9)* | |
H242 | 0.1962 | 0.0340 | 0.8700 | 0.038 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C11 | 0.0253 (11) | 0.0445 (14) | 0.0181 (10) | 0.0048 (10) | 0.0018 (9) | 0.0004 (10) |
O1 | 0.0266 (9) | 0.0553 (11) | 0.0174 (8) | 0.0096 (7) | −0.0037 (7) | 0.0002 (7) |
C12 | 0.0336 (13) | 0.0369 (12) | 0.0244 (11) | 0.0003 (10) | −0.0026 (10) | 0.0003 (10) |
C13 | 0.0349 (14) | 0.0478 (14) | 0.0168 (10) | 0.0032 (11) | 0.0003 (10) | 0.0010 (10) |
C14 | 0.0339 (13) | 0.0386 (13) | 0.0234 (11) | −0.0025 (11) | 0.0002 (9) | 0.0037 (10) |
C21 | 0.0249 (11) | 0.0318 (12) | 0.0293 (12) | 0.0043 (9) | −0.0022 (9) | −0.0022 (9) |
O2 | 0.0231 (9) | 0.0342 (9) | 0.0270 (8) | 0.0007 (7) | −0.0027 (7) | −0.0004 (7) |
C22 | 0.0485 (17) | 0.0376 (13) | 0.0278 (13) | −0.0030 (12) | 0.0021 (10) | 0.0028 (10) |
C23 | 0.0442 (16) | 0.0338 (13) | 0.0445 (15) | −0.0013 (11) | 0.0043 (13) | −0.0018 (12) |
C24 | 0.0436 (15) | 0.0408 (13) | 0.0316 (13) | −0.0011 (12) | 0.0071 (11) | −0.0084 (11) |
C11—O1 | 1.424 (3) | C21—O2 | 1.411 (3) |
C11—C14 | 1.533 (3) | C21—C24 | 1.532 (3) |
C11—C12 | 1.542 (3) | C21—C22 | 1.537 (3) |
C11—H11 | 1.0000 | C21—H21 | 1.0000 |
O1—H1 | 0.8400 | O2—H2 | 0.8400 |
C12—C13 | 1.555 (3) | C22—C23 | 1.547 (3) |
C12—H122 | 0.9900 | C22—H221 | 0.9900 |
C12—H121 | 0.9900 | C22—H222 | 0.9900 |
C13—C14 | 1.553 (4) | C23—C24 | 1.537 (4) |
C13—H131 | 0.9900 | C23—H231 | 0.9900 |
C13—H132 | 0.9900 | C23—H232 | 0.9900 |
C14—H141 | 0.9900 | C24—H241 | 0.9900 |
C14—H142 | 0.9900 | C24—H242 | 0.9900 |
O1—C11—C14 | 119.6 (2) | O2—C21—C24 | 120.9 (2) |
O1—C11—C12 | 119.0 (2) | O2—C21—C22 | 120.2 (2) |
C14—C11—C12 | 89.25 (19) | C24—C21—C22 | 88.66 (18) |
O1—C11—H11 | 109.1 | O2—C21—H21 | 108.5 |
C14—C11—H11 | 109.1 | C24—C21—H21 | 108.5 |
C12—C11—H11 | 109.1 | C22—C21—H21 | 108.5 |
C11—O1—H1 | 109.5 | C21—O2—H2 | 109.5 |
C11—C12—C13 | 87.24 (17) | C21—C22—C23 | 87.3 (2) |
C11—C12—H122 | 114.1 | C21—C22—H221 | 114.1 |
C13—C12—H122 | 114.1 | C23—C22—H221 | 114.1 |
C11—C12—H121 | 114.1 | C21—C22—H222 | 114.1 |
C13—C12—H121 | 114.1 | C23—C22—H222 | 114.1 |
H122—C12—H121 | 111.3 | H221—C22—H222 | 111.3 |
C14—C13—C12 | 88.01 (18) | C24—C23—C22 | 88.13 (18) |
C14—C13—H131 | 114.0 | C24—C23—H231 | 114.0 |
C12—C13—H131 | 114.0 | C22—C23—H231 | 114.0 |
C14—C13—H132 | 114.0 | C24—C23—H232 | 114.0 |
C12—C13—H132 | 114.0 | C22—C23—H232 | 114.0 |
H131—C13—H132 | 111.2 | H231—C23—H232 | 111.2 |
C11—C14—C13 | 87.63 (17) | C21—C24—C23 | 87.8 (2) |
C11—C14—H141 | 114.0 | C21—C24—H241 | 114.0 |
C13—C14—H141 | 114.0 | C23—C24—H241 | 114.0 |
C11—C14—H142 | 114.0 | C21—C24—H242 | 114.0 |
C13—C14—H142 | 114.0 | C23—C24—H242 | 114.0 |
H141—C14—H142 | 111.2 | H241—C24—H242 | 111.2 |
C4H8O | Dx = 1.232 Mg m−3 |
Mr = 72.10 | Melting point: 220 K |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
a = 4.9208 (4) Å | Cell parameters from 479 reflections |
b = 8.2302 (10) Å | θ = 3–20° |
c = 9.5980 (16) Å | µ = 0.09 mm−1 |
V = 388.71 (9) Å3 | T = 293 K |
Z = 4 | Prism, colourless |
F(000) = 160 | 0.02 × 0.02 × 0.01 mm |
CCD-area detector diffractometer | 225 independent reflections |
Radiation source: fine-focus sealed tube | 197 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.073 |
Phi and ω scans | θmax = 20.0°, θmin = 3.3° |
Absorption correction: multi-scan ? | h = −4→4 |
Tmin = 0.425, Tmax = 0.928 | k = −7→7 |
747 measured reflections | l = −6→6 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.071 | Riding |
wR(F2) = 0.162 | w = 1/[σ2(Fo2) + (0.0788P)2 + 0.4005P] where P = (Fo2 + 2Fc2)/3 |
S = 1.15 | (Δ/σ)max < 0.001 |
225 reflections | Δρmax = 0.20 e Å−3 |
23 parameters | Δρmin = −0.19 e Å−3 |
6 restraints | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 1 (10) |
C4H8O | V = 388.71 (9) Å3 |
Mr = 72.10 | Z = 4 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 4.9208 (4) Å | µ = 0.09 mm−1 |
b = 8.2302 (10) Å | T = 293 K |
c = 9.5980 (16) Å | 0.02 × 0.02 × 0.01 mm |
CCD-area detector diffractometer | 225 independent reflections |
Absorption correction: multi-scan ? | 197 reflections with I > 2σ(I) |
Tmin = 0.425, Tmax = 0.928 | Rint = 0.073 |
747 measured reflections | θmax = 20.0° |
R[F2 > 2σ(F2)] = 0.071 | Riding |
wR(F2) = 0.162 | Δρmax = 0.20 e Å−3 |
S = 1.15 | Δρmin = −0.19 e Å−3 |
225 reflections | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
23 parameters | Absolute structure parameter: 1 (10) |
6 restraints |
Experimental. High Pressure data collection − 1.2 GPa. Opening angle of the diamond-anvil cell theta=40 degrees Absorption effects from Be ring and diamond SHADE absorption correct also applied omitting intense data where theta > 40 degrees |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. 023_ALERT_3_A Resolution (too) Low [sin(th)/Lambda < 0.6]··· 19.99 Deg. 028_ALERT_3_A _diffrn_measured_fraction_theta_max Low ···.. 0.66 029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ···.. 0.66 061_ALERT_3_A Tmax/Tmin Range Test RR' too Large ·········.. 0.46 201_ALERT_2_B Isotropic non-H Atoms in Main Residue(s) = 5 210_ALERT_3_B No Anisotropic ADP's Found in CIF ············ ? 340_ALERT_3_B Low Bond Precision on C—C bonds (x 1000) Ang.. 14 024_ALERT_4_C Merging of Friedel Data Preferred for Z≤Si.. ! 062_ALERT_4_C Rescale T(min) & T(max) by ··················. 1.08 089_ALERT_3_C Poor Data / Parameter Ratio ·················· 9.78 241_ALERT_2_C Check High U(eq) as Compared to Neighbors.. C(3) All of the above are due to restrictions of the high pressure cell, and difficulties in data processing all of which are discussed. 125_ALERT_4_C No _symmetry_space_group_name_Hall Given ···.. ? No action taken. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.3773 (15) | −0.0358 (8) | 0.2542 (11) | 0.031 (2)* | |
H1A | 0.5411 | 0.0316 | 0.2603 | 0.037* | |
O1 | 0.4261 (10) | −0.1676 (6) | 0.1630 (12) | 0.040 (2)* | |
H1 | 0.3066 | −0.2361 | 0.1729 | 0.016 (17)* | |
C2 | 0.1304 (14) | 0.0731 (8) | 0.2301 (13) | 0.035 (3)* | |
H2A | 0.1747 | 0.1777 | 0.1893 | 0.042* | |
H2B | −0.0154 | 0.0205 | 0.1792 | 0.042* | |
C3 | 0.0851 (17) | 0.0791 (10) | 0.3853 (14) | 0.056 (3)* | |
H3A | −0.1015 | 0.0591 | 0.4129 | 0.067* | |
H3B | 0.1557 | 0.1764 | 0.4293 | 0.067* | |
C4 | 0.272 (2) | −0.0706 (9) | 0.4002 (15) | 0.045 (3)* | |
H4A | 0.4090 | −0.0597 | 0.4725 | 0.054* | |
H4B | 0.1756 | −0.1728 | 0.4085 | 0.054* |
C1—O1 | 1.415 (11) | C2—H2B | 0.9700 |
C1—C4 | 1.520 (16) | C3—C4 | 1.545 (12) |
C1—C2 | 1.527 (10) | C3—H3A | 0.9700 |
C1—H1A | 0.9800 | C3—H3B | 0.9700 |
O1—H1 | 0.8200 | C4—H4A | 0.9700 |
C2—C3 | 1.507 (17) | C4—H4B | 0.9700 |
C2—H2A | 0.9700 | ||
O1—C1—C4 | 118.9 (7) | C2—C3—C4 | 88.7 (7) |
O1—C1—C2 | 119.4 (8) | C2—C3—H3A | 113.9 |
C4—C1—C2 | 88.9 (6) | C4—C3—H3A | 113.9 |
O1—C1—H1A | 109.3 | C2—C3—H3B | 113.9 |
C4—C1—H1A | 109.3 | C4—C3—H3B | 113.9 |
C2—C1—H1A | 109.3 | H3A—C3—H3B | 111.1 |
C1—O1—H1 | 109.5 | C1—C4—C3 | 88.1 (7) |
C3—C2—C1 | 89.2 (8) | C1—C4—H4A | 114.0 |
C3—C2—H2A | 113.8 | C3—C4—H4A | 114.0 |
C1—C2—H2A | 113.8 | C1—C4—H4B | 114.0 |
C3—C2—H2B | 113.8 | C3—C4—H4B | 114.0 |
C1—C2—H2B | 113.8 | H4A—C4—H4B | 111.2 |
H2A—C2—H2B | 111.0 |
Experimental details
(cb220k) | (cb100k) | (cbutan) | |
Crystal data | |||
Chemical formula | C4H8O | C4H8O | C4H8O |
Mr | 72.10 | 72.10 | 72.10 |
Crystal system, space group | Orthorhombic, Aba2 | Orthorhombic, Aba2 | Orthorhombic, Pna21 |
Temperature (K) | 220 | 100 | 293 |
a, b, c (Å) | 9.3789 (16), 13.658 (2), 13.661 (2) | 9.3312 (15), 13.642 (2), 13.619 (2) | 4.9208 (4), 8.2302 (10), 9.5980 (16) |
V (Å3) | 1749.9 (5) | 1733.7 (5) | 388.71 (9) |
Z | 16 | 16 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.08 | 0.08 | 0.09 |
Crystal size (mm) | 0.50 × 0.33 × 0.33 | 0.50 × 0.33 × 0.33 | 0.02 × 0.02 × 0.01 |
Data collection | |||
Diffractometer | CCD-area detector diffractometer | CCD area detector diffractometer | CCD-area detector diffractometer |
Absorption correction | Multi-scan SADABS | Multi-scan Ref: SADABS | Multi-scan |
Tmin, Tmax | 0.693, 1.000 | 0.766, 1.000 | 0.425, 0.928 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4279, 918, 824 | 5003, 1093, 922 | 747, 225, 197 |
Rint | 0.046 | 0.051 | 0.073 |
θmax (°) | 26.4 | 28.6 | 20.0 |
(sin θ/λ)max (Å−1) | 0.625 | 0.673 | 0.481 |
Refinement | |||
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.104, 1.07 | 0.047, 0.106, 1.00 | 0.071, 0.162, 1.15 |
No. of reflections | 918 | 1093 | 225 |
No. of parameters | 108 | 108 | 23 |
No. of restraints | 1 | 1 | 6 |
H-atom treatment | Riding | Riding | Riding |
Δρmax, Δρmin (e Å−3) | 0.17, −0.17 | 0.25, −0.22 | 0.20, −0.19 |
Absolute structure | Flack H D (1983), Acta Cryst. A39, 876-881 | Flack H D (1983), Acta Cryst. A39, 876-881 | Flack H D (1983), Acta Cryst. A39, 876-881 |
Absolute structure parameter | −10 (10) | −10 (10) | 1 (10) |
Computer programs: BRUKER-SMART, Bruker SMART, BRUKER-SAINT, Bruker SAINT, BRUKER-SHELXTL, Bruker SHELXTL, SHELXS97 (Sheldrick, 1990), SHELXL97 (Sheldrick, 1997).
Acknowledgements
We would like to offer our thanks to S. A. Moggach for his help in the preparation of this paper. We also thank the EPSRC for funding this work and for supporting DRA through his EPSRC Advanced Fellowship.
References
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