research papers
Molecular versus crystal symmetry in tri-substituted triazine, benzene and isocyanurate derivatives
aSchool of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, England, and bInstitute of Pharmaceutical Innovation, School of Pharmacy, University of Bradford, Bradford BD7 1DP, England
*Correspondence e-mail: m.tremayne@bham.ac.uk
The crystal structures of triethyl-1,3,5-triazine-2,4,6-tricarboxylate (I), triethyl-1,3,5-benzenetricarboxylate (II) and tris-2-hydroxyethyl isocyanurate (III) have been determined from conventional laboratory X-ray powder diffraction data using the differential evolution structure solution technique. The determination of these structures presented an unexpectedly wide variation in levels of difficulty, with only the determination of (III) being without complication. In the case of (I) structure solution resulted in a R-factor search surface. Despite the presence of identical side chains in (I) and (II), only the triazine-based system retains threefold molecular symmetry in the The lack of use of the heterocyclic N atom as a hydrogen-bond acceptor in this structure results in the formation of a similar non-centrosymmetric network to the benzene-based structure, but with overall three-dimensional centrosymmetry. The hydrogen-bonded layer structure of (III) is similar to that of other isocyanurate-based structures of this type.
profile that was not ideal, but was subsequently rationalized by single-crystal diffraction as resulting from disorder. of structure (II) showed significant variation in side-chain conformation from the initial powder structure solution. Further investigation showed that the structure solution optimization had indeed been successful, and that had a dramatic effect on the structure-solutionKeywords: molecular symmetry; crystal symmetry; X-ray powder diffraction; single-crystal diffraction; disorder; preferred orientation.
1. Introduction
The control of solid-state supramolecular synthesis and the design of functionalized materials is the ultimate aim of any crystal engineering strategy. However, the incorporation of desirable structural features through the transfer of molecular symmetry to crystal symmetry is an element of C3 molecular symmetry (Thalladi et al., 1997, 1998, 1999). A feature of these materials is the formation of a two-dimensional trigonal non-centrosymmetric network that is characterized by orientation of the molecules within the plane such that the alternating `unlike' ring substituents are pointing directly towards each other (Thalladi et al., 1998). In the majority of these structures C3 molecular symmetry is retained in the crystal packing, although structures with reduced symmetry can also form this distinctive trigonal network (Thalladi et al., 1997). The construction of this `local' acentric structural feature is an important intermediate stage in the design of these materials (Panunto et al., 1987), but the non-centrosymmetry must be extended into the bulk structure in order for the material to display NLO properties such as second harmonic generation.
design that is often overlooked. One area in which this aspect has been successful is in the design of octupolar nonlinear optical (NLO) materials based on a series of isocyanurate and triazine compounds withAs part of our on-going research programme into the development of structure solution methods from powder diffraction data, we have studied a series of similar materials all based on a central isocyanurate, triazine or benzene unit and potentially displaying C3 molecular symmetry. Here we report the of three such compounds, triethyl-1,3,5-triazine-2,4,6-tricarboxylate (I), triethyl-1,3,5-benzenetricarboxylate (II) and tris-2-hydroxyethyl isocyanurate [also known as 1,3,5-tris(2-hydroxyethyl)cyanuric acid] (III) (see scheme) from laboratory X-ray powder diffraction
data. All three materials contain flexible side chains and can therefore either retain their molecular symmetry in the or reduce their symmetry through conformational variation. The presence of identical ethyl carboxylate side chains in (I) and (II) also enables us to make a direct comparison of the triazine- and benzene-based structures, with the absence of any strong hydrogen-bond donors giving an insight into the influence of weak hydrogen bonding on the crystal packing in these compounds. Although few previous comparisons have been made between other analogous systems, distinct differences in are observed, with the central triazine or benzene unit playing a defining role in supramolecular packing; i.e. the dominant CH⋯N planar layer network in 2,4,6-triethynyl-1,3,5-triazine (Ohkita et al., 2002) is replaced by a CH⋯π folded layer structure in 1,3,5-triethynylbenzene (Weiss et al., 1997), whereas the difference in packing density between the tris-dithiadiazolyl derivatives 1,3,5-C6H3(CN2S2)3 and C3N3(CN2S2)3, and the use of a more symmetrical packing motif in the triazine-based structure, can be attributed directly to the contrast between N⋯S and CH⋯S buffering interactions between neighbouring molecules (Cordes et al., 1993).The et al., 2001; David et al., 2002; Tremayne, 2004), which generate trial crystal structures utilizing molecular connectivity in the structure solution calculation, and assess the fitness of each structure by direct comparison between its calculated diffraction pattern and the experimental data. Global optimization methods are used to guide the calculation locating the minimum of the search hypersurface corresponding to the structure solution. A number of different optimization methods have been used in structure solution from powder data, including both sequential and evolutionary algorithms (Newsam et al., 1992; Harris et al., 1994; Andreev et al., 1996; Kariuki et al., 1997; David et al., 1998; Cheung et al., 2002; Favre-Nicolin & Cerny, 2002; Johnston et al., 2002; Pagola et al., 2000). In this paper we have used an evolutionary algorithm based on differential evolution (DE) optimization (Price, 1999), a technique that has been applied successfully to the of several molecular materials from powder diffraction data (Seaton & Tremayne, 2002a; Tremayne et al., 2002b). DE is a relatively new algorithm that creates new members of the population by recombination and mutation of randomly selected members of the current population, forming a new generation via a purely deterministic method of selection. The recombination and mutation processes are carried out in a single step, with the levels of each term controlled using parameters K and F, respectively (Tremayne et al., 2002b). Adjustment of the K and F parameters (taking values between 0 and 1) enables straightforward control of the search dynamic, the only other user-defined parameter being population size. The small number of optimization parameters means that this is a simple method to use and implement, while offering a robust searching of minima with the algorithm adapting to the hypersurface as time proceeds.
of molecular materials from powder diffraction data is now becoming an established but, as illustrated in this paper, not a routine process. The majority of molecular structures are solved using direct-space structure solution methods (HarrisAs described elsewhere (Harris et al., 2001; Tremayne, 2004), the complexity of a direct-space structure solution calculation depends predominantly on the number of variables required to define the structure (i.e. the number of independent molecules or the degree of conformational flexibility) rather than the number of atoms in the Hence, in principle, the complexity of structure solution for the three compounds (I)–(III) should be comparable, with the only significant differences arising from symmetry considerations. However, as detailed below, the determination of these three structures from powder diffraction data presented us with widely varying levels of difficulty, with only the of (III) being without complication. Despite the optimization process in the structure solution of (I) being made significantly easier through the retention of symmetry within the molecule, the effects of disorder led us to the use of single-crystal diffraction for full rationalization of the structure and confirmation that the initial powder structure was indeed correct. The of (II) from powder diffraction data has been previously reported (Tremayne et al., 2002a), although neither a description of the or details of the structure solution calculation were given. In this case significant changes in side-chain conformation were observed during the implications of which will be discussed later. We present our results from a more detailed investigation of this structure solution calculation and the R factor hypersurface involved, showing the effect that factors such as or choice of structural model can have on success. The of (II) has since been redetermined, and confirmed within experimental error, at 150 K, using single-crystal diffraction methods (Dale & Elsegood, 2003).
2. Structure solution and refinement
Samples of (I)–(III) were purchased from Aldrich (UK) and used directly as received. Experimental details of the powder [for (I)–(III)] and single-crystal X-ray diffraction data collection [for (I)] are given in Tables 1 and 2, respectively.1 For both (I) and (II), a number of powder diffraction data sets were collected in both transmission disc and capillary geometry, with the variation in relative intensities between these data sets identifying the as a major consideration. The data sets used for structure characterization were collected using samples that were ground, sprinkled and then pressed between two layers of transparent tape and mounted in disc geometry.
‡DE structure solution in P63. |
2.1. General methods
2.1.1. Powder X-ray diffraction
The powder diffraction patterns collected for compounds (I)–(III) were indexed using the CRYSFIRE package (Shirley, 2000) on the basis of the first 20 observable peaks, and a was assigned to each material by consideration of For each structure, the profile parameters and lattice parameters were refined by the whole profile fitting LeBail method in the program GSAS (Larson & Von Dreele, 1987). Structure solution was then performed using the differential evolution method as implemented in the program POSSUM (Seaton & Tremayne, 2002b). The parameters used in structure solution and of (I)–(III) are summarized in Table 1, and details of the solution process for each structure given below.
All three structures were refined using the GSAS program package (Larson & Von Dreele, 1987). The positions of all atoms were refined subject to soft constraints (weighting factor of 0.001 for bond distances and 0.005 for geminal non-bonded distances) on standard geometry. The methyl H atoms in (I) and (II) were placed in positions considering standard tetrahedral geometry, and symmetry constraints in the case of (I), whereas the hydroxyl H atoms in (III) were placed in positions calculated from the coordinates of the hydrogen-bond donors and acceptors. For the non-H atoms, isotropic atomic displacement parameters were refined constrained according to atom type or environment. of (I) and (II) also required variation of a parameter in the [110] and [010] directions, respectively. The final Rietveld plots for all three structures are shown in Fig. 1 and the final agreement factors from are given in Table 1.
2.1.2. Single-crystal X-ray diffraction
The data were processed using SAINT-Plus (Bruker, 2001), and the structure of (I) was solved and refined using SHELXL97 (Sheldrick, 1997). The non-H atoms were refined anisotropically, whereas the H atoms were placed in calculated positions and refined using a riding model, with atomic displacement parameters of 1.2 times those of the atoms they are bonded to. Further details are given in Table 2.
2.2. Details of structure solution
2.2.1. Triethyl-1,3,5-triazine-2,4,6-tricarboxylate (I)
In the case of (I) both P63 and P63/m were identified as possible space groups, although both required the imposition of symmetry constraints, i.e. location of the molecule around the (, , z) axis in P63 or with additional mirror symmetry in P63/m (on a −6 site). High-resolution solid-state 13C NMR spectroscopy confirmed the presence of threefold symmetry within the molecule, indicating only four crystallographically distinct carbon environments. Structure solution was initially attempted in the lower-symmetry P63, so as to minimize the use of constraints and avoid possible imposition of incorrect symmetry. The structural model of (I) used in the DE calculation comprised a third of the molecule constructed using standard bond lengths and angles, excluding the methyl H atoms. Structure solution required rotation of the structural model around the (, , z) axis, with conformational flexibility described by three freely rotating bonds, as shown in the scheme. Thus, each member of the population consisted of four DE elements, with the population size fixed at 60 members. Five DE calculations were carried out, with K = 0.99 and F = 0.4. All five runs converged to within 0.2% of the Rwp of the best solution, which was clearly distinguishable from the average random structures generated in the DE calculation (Table 1 and Fig. 2a). The conformation of this solution had both the carboxyl and alkyl parts of the flexible chain in the plane of the central aromatic ring (with the alkyl H atoms staggered above and below), suggesting that the correct is P63/m with the molecule lying on a mirror plane. The structure was translated onto the mirror plane at the −6 site and refined in P63/m as described in §2.1.1.
It is clear from Fig. 1(a) that the fit of this to the X-ray powder diffraction data is not ideal. Fortunately, the sample contained some small crystals of suitable quality for from single-crystal X-ray diffraction data. This subsequent analysis identified the presence of potential disorder in the structure (§3.1.1), and clearly confirmed that the crystal packing obtained by powder methods was correct (the minimum, maximum and mean distances between pairs of corresponding atoms in the single-crystal and powder structures are 0.05, 0.16 and 0.10 Å respectively). However, in combination with the effects of and inhomogeneity in this sample, we were unable to model the disorder sufficiently well to improve the Rietveld profile.
2.2.2. Triethyl-1,3,5-benzenetricarboxylate (II)
The structural model of (II) used for structure solution comprised the complete molecule constructed using standard bond lengths and angles, excluding the methyl H atoms. Hence, structure solution required variation of 15 structural parameters: three for translation and three for orientation of the molecule in the . Thus, each member of the population consisted of 15 DE elements with the population size fixed at 300 members. Five DE calculations were carried out, with K = 0.99 and F = 0.3, four of which resulted in the same solution, with a significantly lower Rwp value than other structures generated during the DE calculation (Table 1 and Fig. 2b). This structure solution was used as a starting point for successful (Fig. 1b). The resulting structure is in good agreement with that obtained from the subsequent low-temperature single-crystal diffraction study (Dale & Elsegood, 2003; Fig. 3), given the significant temperature difference between the two studies (the minimum, maximum and mean distances between pairs of corresponding atoms are 0.27, 0.82 and 0.50 Å, respectively).
with the remaining nine parameters used to describe the conformation of the three side chains as shown in the schemeHowever, comparison of the molecular geometry of the structure obtained from the DE calculation and that in the final refined structure shows significant deviation in conformation in two of the side chains (Fig. 3). This deviation can be quantified by consideration of the difference (Δ) in torsion angle values between the two structural models; Δ(C5—C13—O6—C14) = 70°, Δ(C13—O6—C14—C15) = 93°, Δ(C3—C10—O4—C11) = 24° and Δ(C10—O4—C11—C12) = 110°. To investigate whether these differences in arise from differences in the solution and hypersurfaces and to confirm that the DE calculation had indeed located its global minimum, a series of grid search calculations were carried out to enable complete construction and visualization of these hypersurfaces. As optimization techniques such as DE are efficient search algorithms, a separate grid search was needed for systematic variation of the side chains under consideration, i.e. intramolecular rotation about the C13—O6, O6—C14, C10—O4 and O4—C11 bonds, respectively, so that both the relevant solution and hypersurfaces could be fully explored. Using the DE structure solution and the final refined structure as starting models, each torsion angle was rotated independently in steps of 0.5°, with the rest of the molecule unchanged. These calculations were performed with and without the inclusion of the final refined correction to assess the effect of this parameter on the hypersurface (Fig. 4).
These figures illustrate a number of important factors that should be taken into consideration during the a) the DE calculation is successfully locating the minima of the hypersurface that it searches, although some of the minima associated with the rotation of the end groups are broad and ill-defined, (b) introduction of a parameter in the DE calculation raises the Rwp values of the minima but does not have a significant effect on their positions, (c) inclusion of in results in an overall hypersurface with lower Rwp (as expected), but with a significant shift in the position of the minima, (d) the minima in each hypersurface are sharper than those seen in the DE calculations, (e) there is a distinct difference between the position of the minima in the DE and surfaces when compared both before and after the correction has been applied. These observations clearly illustrate the drastic effect that both slight movement and relaxation of molecular geometry, and other factors such as (and the associated shift of global minima), can have on successful highlighting the need for a full after structure solution.
process and explain the behaviour of this structure during (2.2.3. Tris-2-hydroxyethyl isocyanurate (III)
The structural model of (III) used for structure solution was constructed in a similar way to that for (II), excluding the hydroxyl H atoms, such that six freely rotating bonds were needed to describe the conformational flexibility of the molecule (see scheme). The lack of in this molecule was confirmed using high-resolution solid-state 13C NMR spectroscopy, which clearly showed distinct peaks for each C-atom environment. Structure solution required consideration of 12 elements and a population size of 120 was used. The DE calculation was run five times using the control parameters K = 0.99 and F = 0.5, and returned a clearly distinguishable solution (Table 1 and Fig. 2c). This structure was then successfully refined as described earlier (Fig. 1c).
3. Description of the structures
The description and rationalization of (I) and (II) are based on the crystal structures obtained from the single-crystal diffraction data [from Dale & Elsegood, 2003, for (II)], whereas discussion of structure (III) is based on that from the powder data.
3.1. Molecular conformations
3.1.1. Triethyl-1,3,5-triazine-2,4,6-tricarboxylate (I)
The ). Displacement ellipsoids for all the non-H atoms are elongated in the direction perpendicular to the plane of the molecule, the largest elongation being that for O2. This clearly indicates the presence of disorder in the structure, with the short bond distances [C4—C5 = 1.423 (5) and C2—O2 = 1.173 (5) Å] also consistent with a disordered model. The planar symmetrical conformation in (I) is similar to that in both the tris(dimethylamino) derivative (Bullen et al., 1972) and the γ-polymorph of the trimethoxy derivative (Fridman et al., 2004), the latter of which also displays elongation of the ellipsoids perpendicular to the molecular plane.
of (I) is planar (all non-H atoms lie on a mirror plane), and the molecule retains threefold molecular symmetry (Fig. 5The conformation of the ethyl carboxylate side chains in (I) is also comparable to that seen in (II) [see Table 3 and Dale & Elsegood (2003)] and in tris(2-hydroxyethyl)-1,3,5-benzenetricarboxylate (Azumaya et al., 2004) in which there are only slight deviations from planarity with the aromatic ring.
|
3.1.2. Tris-2-hydroxyethyl isocyanurate (III)
The molecular dimensions of (III) are similar to those obtained from powder refinements of analogous compounds, with intramolecular bond lengths and angles showing no unusual features (Fig. 6). The conformation of (III) is similar to that of the majority of other isocyanurate structures, with two of the hydroxyethyl groups oriented on one side of the heterocyclic ring, whilst the third points in the other direction. Despite pointing in opposite directions with respect to the ring, two of these hydroxyethyl side chains have a similar conformation, whereas the third group, which is involved in more intermolecular hydrogen bonding than the other two (§3.2.2), displays a conformation that is approximately perpendicular to the plane of the ring (Table 3).
3.2. Supramolecular aggregation
3.2.1. Triethyl-1,3,5-triazine-2,4,6-tricarboxylate (I)
The supramolecular structure of (I) can be rationalized in terms of a single soft C—H⋯O=C hydrogen bond. Atom C5 at (x, y, z) acts as a donor via H5A to atom O2 at (2 − y, x − y, z), while atom O2 at (x, y, z) acts as an acceptor of H5A at (2 − x + y, 2 − x, z). Propagation of this hydrogen bond with the threefold symmetry of the molecule [(1 − y, x − y, z) and (1 − x + y, 1 − x, z)] means that each molecule is surrounded by six others. This results in the formation of a hydrogen-bonded sheet parallel to (001), containing alternating R33(18) and R33(30) rings in a checkerboard pattern (Fig. 7). These sheets stack along the c axis, at an interlayer distance of 3.382 (1) Å (Fig. 8). These layers are staggered by x = , y = such that intermolecular R33(18) rings lie directly above and below the triazine rings in alternate sheets.
Although triethyl-1,3,5-benzenetricarboxylate (II) in the structure of the molecule itself does not display any molecular or R33(18) and R33(30) rings in a checkerboard pattern. There is an additional C—H⋯O hydrogen- bond linking molecules from adjacent planes into helices around the 61 axis in the [001] direction (Table 4).
the crystal packing of (II) is similar to that of (I). The of (II) is also controlled by C—H⋯O interactions, and forms a hydrogen-bonded sheet parallel to (001) in which each molecule is surrounded by six others, generating alternating
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3.2.2. Tris-2-hydroxyethyl isocyanurate (III)
In (III) the supramolecular structure is determined by eight hydrogen bonds: four soft C—H⋯O=C hydrogen bonds and four hard hydrogen bonds, three of O—H⋯O(hydroxyl) type and one O—H⋯O=C type (Table 4), such that all strong hydrogen-bond donors and acceptors are utilized in the intermolecular network.
All but one of these hydrogen bonds are involved in the formation of a hydrogen-bonded sheet lying in the (001) plane. Each molecule is connected to four other molecules within the sheet via C—H⋯O hydrogen bonds (denoted d, e, f and g) with the interactions to two of these molecules reinforced by O—H⋯O hydrogen bonds (denoted k, l and m) (Fig. 9). The hydroxyl O12 at (x, y, z) acts as a double hydrogen-bond donor, via H12, to carbonyl atom O2 (bond k) and hydroxyl O32 (bond l) at (2 − x, −y, −z), while also acting as an acceptor from atom O52 via H52 (bond m) at (1 − x, −y, −z). These interactions result in the formation of a ribbon running in the [100] direction, reinforced by atoms C1 and C11 in the molecule at (x, y, z) acting as hydrogen-bond donors to carbonyl atoms O2 (bond d) at (2 − x, −y, −z) [forming an R22(10) ring] and O6 (bond g) at (1 − x, −y, −z) [forming an R22(12) ring]. The ribbons are then linked together into a hydrogen-bonded sheet through two R22(12) rings formed by atoms C31 and C51 at (x, y, z) acting as hydrogen-bond donors to O4 (bonds e and f) in molecules (2 − x, 1 − y, −z) and (1 − x, −y, −z), respectively (Fig. 9). These sheets are held together by a fourth strong hydrogen bond in which O32 at (x, y, z) acts as a donor via H32 to O52 at ( + x, − y, + z). This hydrogen bond produces a C(10) chain motif running parallel to the [101] direction generated by the n-glide (Fig. 10).
Although the layer structure of (III) is distinct from the supramolecular packing seen in the majority of other symmetrically tri-substituted isocyanurate materials, the structure within the layers is almost identical to that in the ).
of the tris(2-cyanoethyl) derivative (Thallapally & Desiraju, 20004. Concluding comments
In this paper we have described the R factor illustrates the dramatic effect that the consideration (or omission) of a correction can have on a fitness search surface and the resulting direct-space structure solution calculation. A successful optimization technique will only locate the global minimum of the surface that it explores, so it is the responsibility of the crystallographer to ensure that a suitable search surface is defined. In this case the use of soft geometrical restraints in provided the side chains with the flexibility needed to adapt to the new R factor surface defined by introduction of a correction during thus preventing constraint of the molecule in a `false' minimum and potential consideration of a with the incorrect molecular conformation.
determination of three tri-substituted molecular materials from conventional X-ray powder diffraction data. The difficulties encountered in the of two of these materials, (I) and (II), are not related to the traditional assessment of complexity based on the number of for efficient direct-space optimization, but highlight more fundamental considerations for direct-space structure solution from powder diffraction, such as or deficiencies in the structural model. It is most likely that it is a combination of these factors that has prevented us from obtaining a good Rietveld profile fit for (I). In the case of (II) our study of the effect of side-chain conformation on theThe crystal structures resulting from this work display contrasting behaviour with respect to the retention of threefold molecular symmetry in crystal packing. Although the retention of this molecular symmetry is common in phenoxy-based triazine derivatives (Thalladi et al., 1998, 1999), few other tri-substituted triazines display this behaviour. There are however, a small number of triazines, e.g. the triethynyl derivative (Ohkita et al., 2002) and the α-form of the trimethoxy derivative (Fridman et al., 2004), that display the distinctive hexagonal-type layer packing seen in (I) without requiring the retention of threefold molecular symmetry in the crystal packing. In all these cases this `local' acentric structural feature is not extended into the bulk, as the stacking of layers results in the overall structure being centrosymmetric. However, it is the similarity between the layer structure of the triazine (I) and its benzene analogue (II) that is distinct from previous comparisons of other systems. We believe that this is a consequence of the presence of sufficient hydrogen-bond donors and acceptors in the ethyl carboxylate side chains, and the resulting exclusion of heterocyclic N and aromatic CH atoms from the hydrogen-bond network within the layers of (I) and (II), respectively. Despite this, both systems maintain the characteristic trigonal non-centrosymmetric network with alternating `unlike' substituents on neighbouring molecules pointing directly at each other. The lack of symmetry in the molecule of (II) allows the formation of an additional weak hydrogen-bonded helical motif between the layers and extension of non-centrosymmetry into the bulk structure. It is interesting to note that in all three comparative studies, the triazine-based materials display higher molecular symmetry in their than the benzene-based equivalents. However, the possibility of in these materials, and the differences observed in molecular symmetry between polymorphic forms of triazines (Fridman et al., 2004) and isocyanurates (Mariyatra et al., 2004) with C3 molecular symmetry, makes the controlled design of materials through the transfer of such molecular symmetry to crystal symmetry a continuing challenge.
Supporting information
10.1107/S0108768106020921/bm5031sup1.cif
contains datablocks tttcsingle, global, theca, tttcprofile, tbtcpowder. DOI:Rietveld powder data: contains datablock theca. DOI: 10.1107/S0108768106020921/bm5031thecasup2.rtv
Rietveld powder data: contains datablock tttc. DOI: 10.1107/S0108768106020921/bm5031tttcsup4.rtv
Rietveld powder data: contains datablock tbtc. DOI: 10.1107/S0108768106020921/bm5031tbtcsup5.rtv
Structure factors: contains datablock tttcsingle. DOI: 10.1107/S0108768106020921/bm5031tttcsinglesup3.hkl
Program(s) used to solve structure: POSSUM (Tremayne, Seaton 2002) for theca, tttcprofile, tbtcpowder. Program(s) used to refine structure: GSAS (Larson et al. 1994) for theca, tttcprofile, tbtcpowder; SHELXL97 (Sheldrick, 1997) for tttcsingle.
C9H15N3O6 | Z = 4 |
Mr = 261.24 | F(000) = 552 |
Monoclinic, P21/n | Dx = 1.479 (1) Mg m−3 |
a = 10.4105 (3) Å | Cu Kα1 radiation, λ = 1.54056 Å |
b = 13.1294 (5) Å | µ = 1.08 mm−1 |
c = 8.6735 (3) Å | T = 293 K |
β = 98.222 (2)° | white |
V = 1173.34 (7) Å3 | ?, ? × ? × ? mm |
Bruker AXS D5000 diffractometer | Data collection mode: transmission |
Radiation source: sealed X-ray tube | Scan method: step |
Ge monochromator | 2θmin = 10°, 2θmax = 70°, 2θstep = 0.02° |
Specimen mounting: 'disc' |
Rp = 0.049 | 2958 data points |
Rwp = 0.065 | 105 parameters |
Rexp = ? | 89 restraints |
R(F2) = 0.166 | H-atom parameters constrained |
χ2 = 2.176 | (Δ/σ)max < 0.001 |
C9H15N3O6 | V = 1173.34 (7) Å3 |
Mr = 261.24 | Z = 4 |
Monoclinic, P21/n | Cu Kα1 radiation, λ = 1.54056 Å |
a = 10.4105 (3) Å | µ = 1.08 mm−1 |
b = 13.1294 (5) Å | T = 293 K |
c = 8.6735 (3) Å | ?, ? × ? × ? mm |
β = 98.222 (2)° |
Bruker AXS D5000 diffractometer | Scan method: step |
Specimen mounting: 'disc' | 2θmin = 10°, 2θmax = 70°, 2θstep = 0.02° |
Data collection mode: transmission |
Rp = 0.049 | 2958 data points |
Rwp = 0.065 | 105 parameters |
Rexp = ? | 89 restraints |
R(F2) = 0.166 | H-atom parameters constrained |
χ2 = 2.176 |
x | y | z | Uiso*/Ueq | ||
N1 | 0.7671 (2) | 0.1197 (1) | 0.0531 (4) | 0.042 (4) | |
C1 | 0.77915 (9) | 0.00957 (7) | 0.07596 (9) | 0.017 (4) | |
C2 | 0.8665 (6) | 0.1740 (2) | 0.011 (2) | 0.049 (6) | |
O2 | 0.9638 (5) | 0.1295 (4) | −0.019 (1) | 0.014 (2) | |
N3 | 0.8605 (2) | 0.2767 (1) | 0.0056 (4) | 0.042 (4) | |
C3 | 0.96912 (8) | 0.33436 (6) | −0.03993 (9) | 0.017 (4) | |
C4 | 0.7499 (6) | 0.3247 (2) | 0.027 (2) | 0.049 (6) | |
O4 | 0.7406 (5) | 0.4177 (2) | 0.011 (1) | 0.014 (2) | |
N5 | 0.6473 (2) | 0.2703 (1) | 0.0603 (4) | 0.042 (4) | |
C5 | 0.52924 (9) | 0.32232 (6) | 0.09053 (9) | 0.017 (4) | |
C6 | 0.6590 (6) | 0.1686 (2) | 0.082 (2) | 0.049 (6) | |
O6 | 0.5709 (5) | 0.1198 (4) | 0.128 (1) | 0.014 (2) | |
C11 | 0.73581 (8) | −0.04492 (6) | −0.07816 (9) | 0.011 (4) | |
O12 | 0.7454 (1) | −0.15263 (9) | −0.0553 (4) | 0.024 (3) | |
C31 | 1.04891 (8) | 0.38122 (6) | 0.10369 (9) | 0.011 (4) | |
O32 | 1.0992 (1) | 0.3027 (2) | 0.2087 (3) | 0.024 (3) | |
C51 | 0.44416 (9) | 0.34730 (6) | −0.06305 (8) | 0.011 (4) | |
O52 | 0.3931 (2) | 0.2554 (1) | −0.1351 (2) | 0.024 (3) | |
H5B | 0.5553 (1) | 0.3928 (1) | 0.1543 (2) | 0.05 | |
H5A | 0.4756 (1) | 0.2730 (1) | 0.1602 (2) | 0.05 | |
H51A | 0.5021 (1) | 0.3864 (1) | −0.1402 (1) | 0.05 | |
H51B | 0.3643 (1) | 0.3965 (1) | −0.0406 (2) | 0.05 | |
H3A | 0.9319 (1) | 0.3949 (1) | −0.1205 (2) | 0.05 | |
H3B | 1.0306 (1) | 0.2835 (1) | −0.0971 (2) | 0.05 | |
H31A | 0.9874 (1) | 0.4317 (1) | 0.1614 (1) | 0.05 | |
H31B | 1.1292 (1) | 0.4248 (1) | 0.0685 (1) | 0.05 | |
H1A | 0.7182 (2) | −0.0146 (1) | 0.1618 (2) | 0.05 | |
H1B | 0.8802 (1) | −0.0097 (1) | 0.1177 (2) | 0.05 | |
H11A | 0.7978 (2) | −0.0219 (1) | −0.1633 (2) | 0.05 | |
H11B | 0.6352 (2) | −0.0245 (1) | −0.1211 (2) | 0.05 | |
H52 | 0.3408 | 0.2107 | −0.0808 | 0.05 | |
H32 | 1.044 | 0.2707 | 0.2754 | 0.05 | |
H12 | 0.8288 | −0.1866 | −0.0519 | 0.05 |
N1—C2 | 1.35 (1) | C51—H51B | 1.0921 (15) |
N1—C6 | 1.35 (1) | O52—H52 | 0.97 |
N1—C1 | 1.4624 (17) | C3—C31 | 1.5246 (11) |
C2—N3 | 1.350 (3) | C3—H3A | 1.0922 (17) |
C2—O2 | 1.23 (1) | C3—H3B | 1.0919 (15) |
N3—C4 | 1.35 (1) | C31—O32 | 1.425 (3) |
N3—C3 | 1.461 (2) | C31—H31A | 1.0916 (14) |
C4—N5 | 1.35 (1) | C31—H31B | 1.0919 (14) |
C4—O4 | 1.231 (4) | O32—H32 | 0.97 |
N5—C6 | 1.352 (4) | C1—C11 | 1.5264 (11) |
N5—C5 | 1.462 (2) | C1—H1A | 1.092 (2) |
C6—O6 | 1.23 (1) | C1—H1B | 1.0922 (15) |
C5—C51 | 1.5261 (11) | C11—O12 | 1.4295 (15) |
C5—H5B | 1.0922 (16) | C11—H11A | 1.091 (2) |
C5—H5A | 1.0922 (16) | C11—H11B | 1.094 (2) |
C51—O52 | 1.4262 (17) | O12—H12 | 0.97 |
C51—H51A | 1.0911 (13) | ||
C2—N1—C6 | 119.4 (3) | H51A—C51—H51B | 109.44 (12) |
C2—N1—C1 | 120.3 (2) | C51—O52—H52 | 120.0 |
C6—N1—C1 | 120.2 (3) | N3—C3—C31 | 109.91 (14) |
N1—C2—N3 | 120.4 (10) | N3—C3—H3A | 109.42 (13) |
N1—C2—O2 | 119.6 (3) | N3—C3—H3B | 109.42 (12) |
N3—C2—O2 | 120.0 (10) | C31—C3—H3A | 109.34 (10) |
C2—N3—C4 | 119.9 (4) | C31—C3—H3B | 109.37 (10) |
C2—N3—C3 | 119.5 (4) | H3A—C3—H3B | 109.38 (13) |
C4—N3—C3 | 120.3 (3) | C3—C31—O32 | 109.74 (11) |
N3—C4—N5 | 120.0 (2) | C3—C31—H31A | 109.45 (9) |
N3—C4—O4 | 120.0 (10) | C3—C31—H31B | 109.42 (8) |
N5—C4—O4 | 120.0 (10) | O32—C31—H31A | 109.40 (12) |
C4—N5—C6 | 119.6 (4) | O32—C31—H31B | 109.38 (10) |
C4—N5—C5 | 120.2 (2) | H31A—C31—H31B | 109.44 (11) |
C6—N5—C5 | 119.9 (4) | C31—O32—H32 | 120.0 |
N1—C6—N5 | 120.4 (10) | N1—C1—C11 | 109.62 (14) |
N1—C6—O6 | 119.5 (4) | N1—C1—H1A | 109.44 (15) |
N5—C6—O6 | 120.1 (10) | N1—C1—H1B | 109.50 (13) |
N5—C5—C51 | 109.98 (15) | C11—C1—H1A | 109.45 (11) |
N5—C5—H5B | 109.41 (12) | C11—C1—H1B | 109.38 (11) |
N5—C5—H5A | 109.37 (12) | H1A—C1—H1B | 109.43 (15) |
C51—C5—H5B | 109.33 (10) | C1—C11—O12 | 109.64 (15) |
C51—C5—H5A | 109.36 (11) | C1—C11—H11A | 109.49 (11) |
H5B—C5—H5A | 109.38 (13) | C1—C11—H11B | 109.40 (11) |
C5—C51—O52 | 109.52 (9) | O12—C11—H11A | 109.37 (14) |
C5—C51—H51A | 109.49 (9) | O12—C11—H11B | 109.53 (11) |
C5—C51—H51B | 109.46 (11) | H11A—C11—H11B | 109.40 (15) |
O52—C51—H51A | 109.48 (11) | C11—O12—H12 | 120.1 |
O52—C51—H51B | 109.45 (13) |
C12H15N3O6 | Dx = 1.393 Mg m−3 |
Mr = 297.27 | Cu Kα radiation, λ = 1.54178 Å |
Hexagonal, P63/m | Cell parameters from 438 reflections |
a = 10.9992 (1) Å | θ = 4.6–70.7° |
c = 6.7639 (2) Å | µ = 0.97 mm−1 |
V = 708.68 (2) Å3 | T = 296 K |
Z = 2 | Plate, colourless |
F(000) = 312 | 0.32 × 0.20 × 0.20 mm |
Bruker Smart 6000 CCD diffractometer | 496 independent reflections |
Radiation source: fine-focus sealed tube | 438 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
CCD slices scans | θmax = 70.7°, θmin = 4.6° |
Absorption correction: empirical (using intensity measurements) SADABS | h = −12→13 |
Tmin = 0.747, Tmax = 0.830 | k = −13→13 |
4557 measured reflections | l = −8→8 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.076 | H-atom parameters constrained |
wR(F2) = 0.212 | w = 1/[σ2(Fo2) + (0.0927P)2 + 0.5082P] where P = (Fo2 + 2Fc2)/3 |
S = 1.12 | (Δ/σ)max < 0.001 |
496 reflections | Δρmax = 0.35 e Å−3 |
44 parameters | Δρmin = −0.38 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.050 (9) |
C12H15N3O6 | Z = 2 |
Mr = 297.27 | Cu Kα radiation |
Hexagonal, P63/m | µ = 0.97 mm−1 |
a = 10.9992 (1) Å | T = 296 K |
c = 6.7639 (2) Å | 0.32 × 0.20 × 0.20 mm |
V = 708.68 (2) Å3 |
Bruker Smart 6000 CCD diffractometer | 496 independent reflections |
Absorption correction: empirical (using intensity measurements) SADABS | 438 reflections with I > 2σ(I) |
Tmin = 0.747, Tmax = 0.830 | Rint = 0.042 |
4557 measured reflections |
R[F2 > 2σ(F2)] = 0.076 | 0 restraints |
wR(F2) = 0.212 | H-atom parameters constrained |
S = 1.12 | Δρmax = 0.35 e Å−3 |
496 reflections | Δρmin = −0.38 e Å−3 |
44 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.7981 (3) | 0.3717 (3) | 0.2500 | 0.0612 (13) | |
C2 | 0.9543 (4) | 0.4215 (4) | 0.2500 | 0.0828 (17) | |
C4 | 1.1269 (3) | 0.3555 (4) | 0.2500 | 0.0903 (19) | |
H4 | 1.1734 | 0.4112 | 0.1338 | 0.108* | |
C5 | 1.1367 (4) | 0.2313 (4) | 0.2500 | 0.0747 (14) | |
H5A | 1.2337 | 0.2561 | 0.2500 | 0.090* | |
H5B | 1.0915 | 0.1769 | 0.1341 | 0.090* | |
N1 | 0.7080 (3) | 0.2349 (3) | 0.2500 | 0.0643 (12) | |
O2 | 1.0399 (3) | 0.5410 (3) | 0.2500 | 0.207 (4) | |
O3 | 0.9792 (2) | 0.3184 (2) | 0.2500 | 0.0638 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0355 (17) | 0.0335 (17) | 0.116 (3) | 0.0180 (13) | 0.000 | 0.000 |
C2 | 0.0358 (19) | 0.0365 (18) | 0.176 (5) | 0.0178 (15) | 0.000 | 0.000 |
C4 | 0.0286 (17) | 0.048 (2) | 0.194 (6) | 0.0187 (15) | 0.000 | 0.000 |
C5 | 0.045 (2) | 0.066 (3) | 0.119 (4) | 0.033 (2) | 0.000 | 0.000 |
N1 | 0.0338 (15) | 0.0350 (15) | 0.123 (3) | 0.0165 (11) | 0.000 | 0.000 |
O2 | 0.0396 (17) | 0.0376 (17) | 0.538 (12) | 0.0162 (13) | 0.000 | 0.000 |
O3 | 0.0311 (13) | 0.0376 (13) | 0.123 (3) | 0.0173 (10) | 0.000 | 0.000 |
C1—N1 | 1.325 (4) | C4—C5 | 1.423 (5) |
C1—N1i | 1.335 (4) | C4—O3 | 1.464 (4) |
C1—C2 | 1.520 (4) | C4—H4 | 0.9700 |
C2—O2 | 1.173 (5) | C5—H5A | 0.9600 |
C2—O3 | 1.292 (4) | C5—H5B | 0.9600 |
N1—C1—N1i | 126.0 (3) | C1—N1—C1ii | 114.0 (3) |
N1—C1—C2 | 118.6 (3) | C2—O3—C4 | 116.6 (3) |
N1i—C1—C2 | 115.4 (3) | O3—C4—H4 | 109.7 |
O2—C2—O3 | 125.4 (3) | C4—C5—H5A | 109.5 |
O2—C2—C1 | 122.2 (3) | C4—C5—H5B | 109.5 |
O3—C2—C1 | 112.4 (3) | H5A—C5—H5B | 109.5 |
C5—C4—O3 | 109.8 (3) |
Symmetry codes: (i) −y+1, x−y, z; (ii) −x+y+1, −x+1, z. |
C12H15N3O6 | F(000) = 312 |
Mr = 297.27 | Dx = 1.399 (1) Mg m−3 |
Hexagonal, P63/m | Cu Kα1 radiation, λ = 1.54056 Å |
a = 10.9830 (3) Å | µ = 0.97 mm−1 |
c = 6.7555 (2) Å | T = 293 K |
V = 705.72 (4) Å3 | white |
Z = 2 | ?, ? × ? × ? mm |
Bruker AXS D5000 diffractometer | Data collection mode: transmission |
Radiation source: sealed X-ray tube | Scan method: step |
Ge monochromator | 2θmin = 5°, 2θmax = 50°, 2θstep = 0.02° |
Specimen mounting: 'disc' |
Rp = 0.042 | 2958 data points |
Rwp = 0.067 | 36 parameters |
Rexp = ? | 32 restraints |
R(F2) = 0.128 | H-atom parameters constrained |
χ2 = 3.610 | (Δ/σ)max < 0.001 |
C12H15N3O6 | Z = 2 |
Mr = 297.27 | Cu Kα1 radiation, λ = 1.54056 Å |
Hexagonal, P63/m | µ = 0.97 mm−1 |
a = 10.9830 (3) Å | T = 293 K |
c = 6.7555 (2) Å | ?, ? × ? × ? mm |
V = 705.72 (4) Å3 |
Bruker AXS D5000 diffractometer | Scan method: step |
Specimen mounting: 'disc' | 2θmin = 5°, 2θmax = 50°, 2θstep = 0.02° |
Data collection mode: transmission |
Rp = 0.042 | 2958 data points |
Rwp = 0.067 | 36 parameters |
Rexp = ? | 32 restraints |
R(F2) = 0.128 | H-atom parameters constrained |
χ2 = 3.610 |
x | y | z | Uiso*/Ueq | ||
N1 | 0.4656 (2) | 0.7739 (2) | 0.25 | 0.018 (6) | |
C2 | 0.3608 (4) | 0.7997 (5) | 0.25 | 0.033 (8) | |
C3 | 0.4133 (6) | 0.9502 (5) | 0.25 | 0.05 (1) | |
O4 | 0.3118 (4) | 0.9825 (3) | 0.25 | 0.047 (6) | |
O5 | 0.5357 (7) | 1.0388 (9) | 0.25 | 0.066 (5) | |
C6 | 0.3525 (1) | 1.1314 (3) | 0.25 | 0.128 (8) | |
C7 | 0.2201 (1) | 1.1413 (2) | 0.25 | 0.128 (8) | |
H8 | 0.4145 (2) | 1.1825 (4) | 0.3818 (2) | 0.05 | |
H9 | 0.1602 | 1.0913 | 0.378 | 0.05 | |
H10 | 0.2472 | 1.2484 | 0.25 | 0.05 |
N1—C2 | 1.316 (6) | C6—C7 | 1.512 (3) |
C2—C3 | 1.453 (7) | C6—H8 | 1.091 (3) |
C3—O4 | 1.328 (8) | C7—H9 | 1.0600 |
C3—O5 | 1.20 (1) | C7—H10 | 1.0600 |
O4—C6 | 1.464 (4) | ||
C2—N1—C2i | 119.9354 | O4—C6—H8iii | 109.8 (2) |
N1—C2—N1ii | 120.0646 | C7—C6—H8iii | 109.8 (2) |
N1—C2—C3 | 110.7 (4) | H8—C6—H8iii | 109.522 (2) |
C2—C3—O4 | 113.3 (5) | C6—C7—H9iii | 109.00 (6) |
C2—C3—O5 | 124.6 (7) | C6—C7—H10 | 109.4882 |
O4—C3—O5 | 122.1 (6) | H9—C7—H9iii | 109.489 (2) |
C3—O4—C6 | 118.0 (4) | H9iii—C7—H10 | 109.00 |
O4—C6—C7 | 108.2 (2) |
Symmetry codes: (i) y−x, −x+1, z; (ii) −y+1, x−y+1, z; (iii) x, y, −z+3/2. |
C15H18O6 | F(000) = 936.0 |
Mr = 294.29 | Dx = 1.295 (1) Mg m−3 |
Hexagonal, P61 | Cu Kα1 radiation, λ = 1.54056 Å |
a = 11.3588 (1) Å | µ = 0.84 mm−1 |
c = 20.2725 (3) Å | T = 293 K |
V = 2265.18 (4) Å3 | white |
Z = 6 | ?, ? × ? × ? mm |
Bruker AXS D5000 diffractometer | Data collection mode: transmission |
Radiation source: sealed X-ray tube | Scan method: step |
Ge monochromator | 2θmin = 4°, 2θmax = 80°, 2θstep = 0.02° |
Specimen mounting: 'disc' |
Rp = 0.042 | 3915 data points |
Rwp = 0.058 | 143 parameters |
Rexp = ? | 110 restraints |
R(F2) = 0.118 | H-atom parameters constrained |
χ2 = 28.730 | (Δ/σ)max < 0.001 |
C15H18O6 | Z = 6 |
Mr = 294.29 | Cu Kα1 radiation, λ = 1.54056 Å |
Hexagonal, P61 | µ = 0.84 mm−1 |
a = 11.3588 (1) Å | T = 293 K |
c = 20.2725 (3) Å | ?, ? × ? × ? mm |
V = 2265.18 (4) Å3 |
Bruker AXS D5000 diffractometer | Scan method: step |
Specimen mounting: 'disc' | 2θmin = 4°, 2θmax = 80°, 2θstep = 0.02° |
Data collection mode: transmission |
Rp = 0.042 | 3915 data points |
Rwp = 0.058 | 143 parameters |
Rexp = ? | 110 restraints |
R(F2) = 0.118 | H-atom parameters constrained |
χ2 = 28.730 |
x | y | z | Uiso*/Ueq | ||
C1 | 0.2051 (13) | 0.1980 (17) | 0.454 (2) | 0.018 (3) | |
C2 | 0.1015 (12) | 0.0610 (16) | 0.4563 (19) | 0.018 (3) | |
C3 | 0.1463 (13) | −0.0345 (17) | 0.457 (2) | 0.018 (3) | |
C4 | 0.2860 (13) | 0.0038 (14) | 0.456 (2) | 0.018 (3) | |
C5 | 0.3881 (15) | 0.1418 (14) | 0.454 (2) | 0.018 (3) | |
C6 | 0.3450 (14) | 0.2389 (15) | 0.4522 (16) | 0.018 (3) | |
C7 | 0.4481 (14) | 0.3864 (14) | 0.4613 (17) | 0.046 (5) | |
O8 | 0.5761 (14) | 0.4116 (14) | 0.4569 (17) | 0.043 (3) | |
C9 | 0.6891 (17) | 0.5510 (16) | 0.4597 (17) | 0.063 (4) | |
C10 | 0.8191 (19) | 0.5629 (18) | 0.4847 (14) | 0.063 (4) | |
O11 | 0.4170 (16) | 0.4748 (13) | 0.4522 (15) | 0.040 (3) | |
C12 | 0.3379 (14) | −0.0952 (13) | 0.4608 (19) | 0.046 (5) | |
O13 | 0.2348 (12) | −0.2254 (13) | 0.4615 (13) | 0.043 (3) | |
C14 | 0.2644 (14) | −0.3368 (15) | 0.459 (2) | 0.063 (4) | |
C15 | 0.1344 (15) | −0.4718 (17) | 0.4601 (16) | 0.063 (4) | |
C16 | −0.0467 (13) | 0.0126 (14) | 0.4474 (19) | 0.046 (5) | |
O17 | −0.0645 (14) | 0.1218 (15) | 0.4491 (17) | 0.043 (3) | |
C18 | −0.2092 (16) | 0.0761 (18) | 0.452 (2) | 0.063 (4) | |
C19 | −0.220 (2) | 0.1990 (18) | 0.4345 (16) | 0.063 (4) | |
O20 | 0.4606 (14) | −0.0556 (16) | 0.4623 (16) | 0.040 (3) | |
O21 | −0.1281 (12) | −0.1064 (16) | 0.4615 (17) | 0.040 (3) | |
H22 | 0.172 (4) | 0.274 (3) | 0.458 (12) | 0.05 | |
H23 | 0.062 (3) | −0.140 (4) | 0.465 (12) | 0.05 | |
H24 | 0.497 (2) | 0.170 (5) | 0.459 (15) | 0.05 | |
H25 | 0.666 (4) | 0.621 (4) | 0.486 (4) | 0.05 | |
H26 | 0.711 (5) | 0.584 (5) | 0.4080 (19) | 0.05 | |
H27 | 0.319 (6) | −0.335 (6) | 0.414 (3) | 0.05 | |
H28 | 0.333 (6) | −0.330 (6) | 0.499 (4) | 0.05 | |
H29 | −0.246 (5) | 0.049 (8) | 0.503 (3) | 0.05 | |
H30 | −0.271 (4) | −0.012 (4) | 0.420 (4) | 0.05 | |
H31 | −0.305 (10) | 0.200 (13) | 0.460 (5) | 0.05 | |
H32 | −0.125 (6) | 0.292 (4) | 0.448 (7) | 0.05 | |
H33 | −0.232 (11) | 0.198 (14) | 0.3805 (17) | 0.05 | |
H34 | 0.148 (6) | −0.559 (4) | 0.449 (8) | 0.05 | |
H35 | 0.095 (11) | −0.487 (7) | 0.511 (2) | 0.05 | |
H36 | 0.051 (7) | −0.484 (7) | 0.428 (5) | 0.05 | |
H37 | 0.907 (4) | 0.652 (10) | 0.463 (5) | 0.05 | |
H38 | 0.822 (5) | 0.573 (14) | 0.5388 (17) | 0.05 | |
H39 | 0.832 (7) | 0.478 (8) | 0.468 (6) | 0.05 |
C1—C2 | 1.41 (2) | C14—H28 | 1.10 (9) |
C1—C6 | 1.42 (3) | C15—H34 | 1.10 (6) |
C1—H22 | 1.10 (6) | C15—H35 | 1.10 (6) |
C2—C3 | 1.41 (2) | C15—H36 | 1.10 (9) |
C2—C16 | 1.50 (2) | C16—O17 | 1.35 (2) |
C3—C4 | 1.42 (2) | C16—O21 | 1.23 (2) |
C3—H23 | 1.11 (7) | O17—C18 | 1.46 (3) |
C4—C5 | 1.41 (2) | C18—C19 | 1.50 (3) |
C4—C12 | 1.51 (2) | C18—H29 | 1.10 (7) |
C5—C6 | 1.41 (2) | C18—H30 | 1.10 (6) |
C5—H24 | 1.12 (8) | C19—H31 | 1.10 (13) |
C6—C7 | 1.50 (2) | C19—H32 | 1.10 (7) |
C7—O8 | 1.34 (3) | C19—H33 | 1.10 (5) |
C7—O11 | 1.23 (2) | H25—H26 | 1.78 (9) |
O8—C9 | 1.46 (2) | H27—H28 | 1.73 (10) |
C9—C10 | 1.50 (3) | H29—H30 | 1.79 (10) |
C9—H25 | 1.09 (6) | H31—H32 | 1.79 (15) |
C9—H26 | 1.10 (5) | H31—H33 | 1.82 (13) |
C10—H37 | 1.10 (10) | H32—H33 | 1.79 (15) |
C10—H38 | 1.10 (5) | H34—H35 | 1.76 (15) |
C10—H39 | 1.10 (9) | H34—H36 | 1.75 (12) |
C12—O13 | 1.352 (19) | H35—H36 | 1.76 (12) |
C12—O20 | 1.23 (2) | H37—H38 | 1.80 (12) |
O13—C14 | 1.46 (2) | H37—H39 | 1.72 (13) |
C14—C15 | 1.51 (2) | H38—H39 | 1.84 (14) |
C14—H27 | 1.10 (8) | ||
C2—C1—C6 | 123.0 (13) | H38—C10—H39 | 113 (9) |
C2—C1—H22 | 116 (2) | C4—C12—O13 | 111.6 (12) |
C6—C1—H22 | 121 (2) | C4—C12—O20 | 121.3 (14) |
C1—C2—C3 | 115.3 (12) | O13—C12—O20 | 127.1 (14) |
C1—C2—C16 | 124.5 (13) | C12—O13—C14 | 119.8 (12) |
C3—C2—C16 | 119.4 (12) | O13—C14—C15 | 110.3 (12) |
C2—C3—C4 | 122.8 (13) | O13—C14—H27 | 113 (3) |
C2—C3—H23 | 113 (3) | O13—C14—H28 | 112 (3) |
C4—C3—H23 | 124 (2) | C15—C14—H27 | 107 (3) |
C3—C4—C5 | 120.9 (13) | C15—C14—H28 | 111 (3) |
C3—C4—C12 | 124.3 (13) | H27—C14—H28 | 104 (6) |
C5—C4—C12 | 114.8 (11) | C14—C15—H34 | 114 (3) |
C4—C5—C6 | 117.1 (12) | C14—C15—H35 | 107 (4) |
C4—C5—H24 | 120 (3) | C14—C15—H36 | 118 (3) |
C6—C5—H24 | 123 (3) | H34—C15—H35 | 106 (10) |
C1—C6—C5 | 120.9 (13) | H34—C15—H36 | 105 (8) |
C1—C6—C7 | 119.0 (12) | H35—C15—H36 | 106 (9) |
C5—C6—C7 | 119.2 (11) | C2—C16—O17 | 108.5 (12) |
C6—C7—O8 | 112.9 (12) | C2—C16—O21 | 117.6 (13) |
C6—C7—O11 | 120.7 (14) | O17—C16—O21 | 128.8 (16) |
O8—C7—O11 | 122.6 (15) | C16—O17—C18 | 109.5 (12) |
C7—O8—C9 | 120.2 (14) | O17—C18—C19 | 105.1 (13) |
O8—C9—C10 | 113.8 (16) | O17—C18—H29 | 110 (3) |
O8—C9—H25 | 114 (2) | O17—C18—H30 | 113 (2) |
O8—C9—H26 | 105 (3) | C19—C18—H29 | 107 (3) |
C10—C9—H25 | 110 (3) | C19—C18—H30 | 113 (3) |
C10—C9—H26 | 104 (3) | H29—C18—H30 | 108 (3) |
H25—C9—H26 | 109 (3) | C18—C19—H31 | 113 (4) |
C9—C10—H37 | 110 (3) | C18—C19—H32 | 110 (3) |
C9—C10—H38 | 109 (5) | C18—C19—H33 | 107 (5) |
C9—C10—H39 | 112 (3) | H31—C19—H32 | 109 (8) |
H37—C10—H38 | 110 (9) | H31—C19—H33 | 111 (10) |
H37—C10—H39 | 103 (7) | H32—C19—H33 | 108 (10) |
Experimental details
(theca) | (tttcsingle) | (tttcprofile) | (tbtcpowder) | |
Crystal data | ||||
Chemical formula | C9H15N3O6 | C12H15N3O6 | C12H15N3O6 | C15H18O6 |
Mr | 261.24 | 297.27 | 297.27 | 294.29 |
Crystal system, space group | Monoclinic, P21/n | Hexagonal, P63/m | Hexagonal, P63/m | Hexagonal, P61 |
Temperature (K) | 293 | 296 | 293 | 293 |
a, b, c (Å) | 10.4105 (3), 13.1294 (5), 8.6735 (3) | 10.9992 (1), 10.9992 (1), 6.7639 (2) | 10.9830 (3), 10.9830 (5), 6.7555 (2) | 11.3588 (1), 11.3588 (1), 20.2725 (3) |
α, β, γ (°) | 90, 98.222 (2), 90 | 90, 90, 120 | 90, 90, 120 | 90, 90, 120 |
V (Å3) | 1173.34 (7) | 708.68 (2) | 705.72 (4) | 2265.18 (4) |
Z | 4 | 2 | 2 | 6 |
Radiation type | Cu Kα1, λ = 1.54056 Å | Cu Kα | Cu Kα1, λ = 1.54056 Å | Cu Kα1, λ = 1.54056 Å |
µ (mm−1) | 1.08 | 0.97 | 0.97 | 0.84 |
Specimen shape, size (mm) | ?, ? × ? × ? | 0.32 × 0.20 × 0.20 | ?, ? × ? × ? | ?, ? × ? × ? |
Data collection | ||||
Diffractometer | Bruker AXS D5000 diffractometer | Bruker Smart 6000 CCD diffractometer | Bruker AXS D5000 diffractometer | Bruker AXS D5000 diffractometer |
Specimen mounting | 'disc' | – | 'disc' | 'disc' |
Data collection mode | Transmission | – | Transmission | Transmission |
Data collection method | Step | CCD slices scans | Step | Step |
Absorption correction | – | Empirical (using intensity measurements) SADABS | – | – |
Tmin, Tmax | – | 0.747, 0.830 | – | – |
No. of measured, independent and observed reflections | – | 4557, 496, 438 | – | – |
Rint | – | 0.042 | – | – |
θ values (°) | 2θmin = 10 2θmax = 70 2θstep = 0.02 | θmax = 70.7, θmin = 4.6 | 2θmin = 5 2θmax = 50 2θstep = 0.02 | 2θmin = 4 2θmax = 80 2θstep = 0.02 |
Distance from source to specimen (mm) | – | 0.612 | – | – |
Refinement | ||||
R factors and goodness of fit | Rp = 0.049, Rwp = 0.065, Rexp = ?, R(F2) = 0.166, χ2 = 2.176 | R[F2 > 2σ(F2)] = 0.076, wR(F2) = 0.212, S = 1.12 | Rp = 0.042, Rwp = 0.067, Rexp = ?, R(F2) = 0.128, χ2 = 3.610 | Rp = 0.042, Rwp = 0.058, Rexp = ?, R(F2) = 0.118, χ2 = 28.730 |
No. of reflections/data points | 2958 | 496 | 2958 | 3915 |
No. of parameters | 105 | 44 | 36 | 143 |
No. of restraints | 89 | 0 | 32 | 110 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | – | 0.35, −0.38 | – | – |
Computer programs: POSSUM (Tremayne, Seaton 2002), GSAS (Larson et al. 1994), SHELXL97 (Sheldrick, 1997).
Acknowledgements
MT is grateful to the Royal Society for the award of a University Research Fellowship, and SYC thanks the University of Birmingham for financial support. CCS thanks the University of Birmingham and GlaxoSmithKline (UK) for studentship support.
References
Andreev, Y. G., Lightfoot, P. & Bruce, P. G. (1996). Chem. Commun. pp. 2169–2170. CrossRef Web of Science Google Scholar
Azumaya, I., Uchida, D., Kato, T., Yokoyama, A., Tanatani, A., Takayanagi, H. & Yokozawa, T. (2004). Angew. Chem. Int. Ed. 43, 1360–1363. Web of Science CSD CrossRef CAS Google Scholar
Brandenburg, K. (2005). DIAMOND. Version 3.1. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2001). SAINT-Plus. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bullen, G. J., Corney, D. J. & Stephens, F. S. (1972). J. Chem. Soc. Perkin 2, pp. 642–646. CrossRef Google Scholar
Burnett, M. N. & Johnson, C. K. (1996). ORTEPIII. Report ORNL-6895. Oak Ridge National Laboratory, Tennessee, USA. Google Scholar
Cheung, E. Y., McCabe, E. E., Harris, K. D. M., Johnston, R. L., Tedesco, E., Raja, K. M. P. & Balaram, P. (2002). Angew. Chem. Int. Ed. 41, 494–496. Web of Science CSD CrossRef CAS Google Scholar
Cordes, A. W., Haddon, R. C., Hicks, R. G., Kennepohl, D. K., Oakley, R. T., Schneemeyer, L. F. & Waszczak, J. V. (1993). Inorg. Chem. 32, 1554–1558. CSD CrossRef CAS Web of Science Google Scholar
Dale, S. H. & Elsegood, M. R. J. (2003). Acta Cryst. E59, o836–o837. Web of Science CSD CrossRef IUCr Journals Google Scholar
David, W. I. F., Shankland, K., McCusker, L. B. & Baerlocher, Ch. (2002). Editors. Structure Determination from Powder Diffraction Data. Oxford University Press. Google Scholar
David, W. I. F., Shankland, K. & Shankland, N. (1998). Chem. Commun. pp. 931–932. Web of Science CSD CrossRef Google Scholar
Favre-Nicolin, V. & Cerny, R. (2002). J. Appl. Cryst. 35, 734–743. Web of Science CrossRef CAS IUCr Journals Google Scholar
Fridman, N., Kapon, M., Sheynin, Y. & Kaftory, M. (2004). Acta Cryst. B60, 97–102. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Harris, K. D. M., Tremayne, M. & Kariuki, B. M. (2001). Angew. Chem. Int. Ed. 40, 1626–1651. Web of Science CrossRef CAS Google Scholar
Harris, K. D. M., Tremayne, M., Lightfoot, P. & Bruce, P. G. (1994). J. Am. Chem. Soc. 116, 3543–3547. CSD CrossRef CAS Web of Science Google Scholar
Johnston, J. C., David, W. I. F., Markvardsen, A. J. & Shankland, K. (2002). Acta Cryst. A58, 441–447. Web of Science CrossRef CAS IUCr Journals Google Scholar
Kariuki, B. M., Serrano-Gonzalez, H., Johnston, R. L. & Harris, K. D. M. (1997). Chem. Phys. Lett. 280, 189–195. Web of Science CrossRef CAS Google Scholar
Larson, A. C. & Von Dreele, R. B. (1987). GSAS. Generalized Structure Analysis System. Report No. LAUR-86–748. Los Alamos National Laboratory, New Mexico, USA. Google Scholar
Mariyatra, M. B., Panchanatheswaran, K., Low, J. N. & Glidewell, C. (2004). Acta Cryst. C60, o682–o685. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Newsam, J. M., Deem, M. W. & Freeman, C. M. (1992). Accuracy in Powder Diffraction II. NIST Special Publication No. 846, pp. 80–91. Gaithersburg, MA: NIST. Google Scholar
Ohkita, M., Kawano, M., Suzuki, T. & Tsuji, T. (2002). Chem. Commun. pp. 3054–3055. CrossRef Google Scholar
Pagola, S., Stephens, P. W., Bohle, D. S., Kosar, A. D. & Madsen, S. K. (2000). Nature (London), 404, 307–310. Web of Science PubMed CAS Google Scholar
Panunto, T. W., Urbanczyk-Lipowska, Z., Johnson, R. & Etter, M. (1987). J. Am. Chem. Soc. 109, 7786–7797. CSD CrossRef CAS Web of Science Google Scholar
Price, K. V. (1999). New Ideas in Optimization, edited by D. Corne, M. Dorigo & F. Glover, pp. 77–158. London: McGraw–Hill. Google Scholar
Seaton, C. C. & Tremayne, M. (2002a). Chem. Commun. pp. 880–881. CSD CrossRef Google Scholar
Seaton, C. C. & Tremayne, M. (2002b). POSSUM. School of Chemistry, University of Birmingham, UK. Google Scholar
Sheldrick G. M. (1997). SHELXL97. University of Gottingen, Germany. Google Scholar
Shirley, R. A. (2000). CRYSFIRE. University of Surrey, UK. Google Scholar
Thalladi, V. R., Boese, R., Brasselet, S., Ledoux, I., Zyss, J., Jetti, R. K. R. & Desiraju, G. R. (1999). Chem. Commun. pp. 1639–1640. Web of Science CSD CrossRef Google Scholar
Thalladi, V. R., Brasselet, S., Blaser, D., Boese, R., Zyss, J., Nangia, A. & Desiraju, G. R. (1997). Chem. Commun. pp. 1841–1842. Google Scholar
Thalladi, V. R., Brasselet, S., Weiss, H.-C., Blaser, D., Katz, A. M., Carrell, H. L., Boese, R., Zyss, J., Nangia, A. & Desiraju, G. R. (1998). J. Am. Chem. Soc. 120, 2563–2577. Web of Science CSD CrossRef CAS Google Scholar
Thallapally, P. K. & Desiraju, G. R. (2000). Acta Cryst. C56, 572–573. CSD CrossRef CAS IUCr Journals Google Scholar
Tremayne, M. (2004). Philos. Trans. R. Soc. London Ser. A, 362, 2691–2707. CrossRef CAS Google Scholar
Tremayne, M., Seaton, C. C. & Glidewell, C. (2002a). Am. Trans. 37, 35–50. CAS Google Scholar
Tremayne, M., Seaton, C. C. & Glidewell, C. (2002b). Acta Cryst. B58, 823–834. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Weiss, H.-C., Blaser, D., Boese, R., Doughan, B. M. & Haley, M. M. (1997). Chem. Commun. pp. 1703–1704. CrossRef Google Scholar
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