feature articles
Charge density and optical properties of multicomponent crystals containing active pharmaceutical ingredients or their analogues
aDepartment of Crystal Chemistry and Crystal Physics, Jagiellonian Univeristy, Kraków 30-060, Poland
*Correspondence e-mail: gryl@chemia.uj.edu.pl
Active pharmaceutical ingredients (APIs), through their favourable donor/acceptor spatial distribution and synthon formation flexibility, are attractive building blocks in modern materials crystallography. The optical properties of a crystal strongly depend on two factors, i.e. the spatial distribution of molecules in the and the electronic properties of molecular building blocks (dipole moments, polarizabilities, hyperpolarizabilities). Although the latter are easy to predict through ab initio calculations, the former are not. Only a combination of experimental and theoretical charge density studies together with prediction and measurement of optical properties enable full analysis of the obtained functional material in terms of its usefulness in practical applications. This article presents design strategies of optical materials based on selected pharmaceutical molecules. Factors that contribute to molecular recognition in the four selected polar/chiral crystal phases (derived through charge density and Hirshfeld surfaces analysis) have been determined. Theoretically predicted optical properties of the molecular/ionic building blocks as well as bulk effects have been confirmed experimentally. This research is a first step in the design of novel optical materials based on push–pull molecules and APIs.
Keywords: crystal engineering; active pharmaceutical ingredients; charge density studies; optical properties; ab initio calculations.
1. Introduction
Molecular self-assembly leading to crystalline materials showing unique physical properties is a complicated process, which requires understanding of the molecular/atomic features of the building blocks constituting the crystal phase. Quantitative crystal engineering (Tiekink et al., 2011) combines experimental and theoretical techniques which enable moving from trial-and-error to comprehensive solutions in materials crystallography. The following methods should be of particular interest for the design of solids with desired physical, chemical or biological properties:
In particular, the optical properties of a crystal depend on the spatial distribution of molecules in the ). Additionally, for an outstanding bulk effect molecular or ionic building blocks should possess large values of polarizability and/or hyperpolarizability. The synthesis of such materials is still challenging. Many organic molecules with high polarizability and hyperpolarizability arrange into dimers or have an antiparallel orientation in the in both cases causing dipole moments to cancel themselves out (Stadnicka et al., 2002). In this case the does not exhibit desirable bulk properties such as OA or SHG. In the structure, enhancement of the by a controlled alignment of building blocks is very much possible and favorable for a sufficient bulk effect to take place. A charge density study of the non-linear optical (NLO) chromophore 2-methyl-4-nitroaniline has shown the significance of this effect (Howard et al., 1992; Whitten et al., 2006).
as well as on the electronic properties (dipole moment, polarizability, hyperpolarizability) of the building blocks. Optical devices serve a major role in modern sciences and technology. Several requirements are necessary for the successful design of optical materials to take place. In particular, crystal phases engineered towards linear and non-linear optical properties are often bound by symmetry restrictions: structural polarity and/or Properties like optical activity (OA) or second harmonic generation (SHG) can be observed only in noncentrosymmetric crystals (Boulanger & Zyss, 2003There are many ways to overcome the centrosymmetricity barrier: usage of chiral molecules or chiral solvents for crystallization and co-crystallization; utilization of ). Even if the structure lacks an inversion center, pure organic, single component molecular materials despite having generally large nonlinear optical susceptibilities of second order have certain limitations: poor mechanical resistance and increased optical absorption. The solution for modern optoelectronics seems to be multicomponent materials built of either organic or mixed organic and inorganic components selected in a specific way in order to combine molecular and structural properties to form a three-dimensional architecture. The choice of building blocks is crucial: in an ideal case push–pull molecules should be linked with constituents enabling synthon formation flexibility. In the search for hydrogen-bond diversity one could consider active pharmaceutical ingredients (APIs). An API is a substance or a mixture of substances used in the manufacture of a drug product and which becomes an active ingredient in the drug product itself. Interest in pharmaceutical molecules has so far been focused on modifying the bioavailability, safety and efficacy of the drug product. One might wonder why APIs? There are many other molecules with hydrogen-bond donor and acceptor sites. First of all we should not consider APIs as one hermetic group with similar or identical functional groups. APIs can be simple molecules like urea or more complex systems like lidocaine or quinidine. What makes them worth considering is: (1) availability – many of them (despite a general belief) are easily accessible as they are used in the pharmaceutical industry; (2) price – low cost compared with other organic molecules with a complex, multistep synthesis and/or not synthesized on an industrial scale; (3) toxicity – less harmful compared with many organic compounds, e.g. 2-amino-5-nitropyridine, 2-methyl-4-nitroaniline, 4-nitroaniline and others proposed as NLO chromophores; (4) – some APIs possess one or more chiral centers, promoting the formation of polar/chiral crystal structures; (5) – many APIs crystallize in many polymorphic forms ensuring synthon formation flexibility, which is relevant for crystal engineering; (6) scientifically scrutinized – pharmaceutical co-crystals and salts are gaining more and more attention in the scientific community, thus already there is a sufficient amount of structural data for crystal engineering purposes; (7) the fact that there are crystals of API or their derivatives known to exhibit NLO effects. Barbituric acid derivatives are known as organic, efficient NLO materials, e.g. tetrathiafulvalene-n-(thio)barbituric acid chromophores or glucosyl substituted barbituric acid derivatives (Song et al., 1995; Cao et al., 1995; Garín et al., 1998; Vohra et al., 2000; Pal et al., 2001; Lee et al., 2005; Feng et al., 2006). In particular, p-substituted benzalbarbituric acids were found to exhibit relatively high SHG intensity (Kondo et al., 1990, 1991, 1992) and exceptional hardness in comparison with other organic materials used for SHG measurements. Toth et al. (2015) predicted theoretically a SHG effect for several API crystals (e.g. crystals of quinidine, flutamide, griseofulvin, benzocaine, naproxen and others) in the search for an effective way to probe the crystal structures of pharmaceutically relevant solids. Moreover, urea crystals are used as standard for SHG measurements.
formers that promote the formation of noncentrosymmetric crystal structures (Cole, 2003APIs have already proven useful for designing multicomponent functional solids utilizing the favorable spatial distribution of hydrogen-bond donors and acceptors in the molecule (Gryl et al., 2014), see Fig. 1. The ability to form heterosynthons with other molecules could be used for engineering crystal phases exhibiting a wider scope of properties and in particular linear and nonlinear optics (LO and NLO, resxpectively; Gryl et al., 2015). Different utilization of the same donors and acceptors of hydrogen bonds leads to a variety of salts, co-crystals, coordination compounds and solvates based on API molecules (Vishweshwar et al., 2005). There are known attempts to introduce polarity and/or to the and tuning of mechanical properties through co-crystallization with APIs. Urea and m-nitrobenzoic acid co-crystals (Rai et al., 2002) have a SHG intensity comparable with that of urea, whereas the hardness of the material is much improved in the binary crystal. Two out of three pharmaceutical co-crystals of 1,4-bis(4-pyridyl)-2,3-diaza-1,3-butadiene and camphoric acid are non-centrosymmetric (Bisht et al., 2014) and are built of optically active, flexible organic nitrogen-donor molecules. Co-crystals and salts of amino acids are known NLO materials: L-ornithine monohydrochloride (Senthil et al., 2009) L-phenylalanine-benzoic acid co-crystals, LPBA (Geetha et al., 2011); glycine oxalic acid co-crystals, GOA (Pandey, 2014); glycine thiourea co-crystals, GT (Ruby & Raj, 2013); L-histidinium hydrogen oxalate (Chimpri et al., 2013). Co-crystals containing salicylic acid (Andal & Murugakoothan, 2014) and nicotinamide or izonicotinamide (Ratajczak et al., 2013) are known to exhibit NLO effects. Bis nicotinamidium bis D-tartrate 1.25-hydrate crystals exhibit SHG efficiency of 1.25 compared with KDP (potassium dihydrogen phosphate) (Senthil Murugan et al., 2015). A favorable distribution of hydrogen-bond donors and acceptors as well as the possibility of metal-ion complexation (Bolz et al., 2010) allow the potential for the designed engineering of novel materials based on barbituric acid or its derivatives (Zerkowski et al., 1997; Lehn et al., 1990; Xiong et al., 2003). All of the above facts make pharmaceutical molecules at least worth considering as components for engineering optical devices.
After the selection of building blocks based on the predicted lock-and-key mechanism, their properties and how they are affected by the crystal field can be assessed. The Quantum Theory of Atoms in Molecules (QTAIM) allows the characterization of interactions in crystals through analysis of concentration and depletion of electron density (Bader, 1990; Matta & Bader, 2006). Topological and energetic descriptors can yield the means for distinguishing closed-shell and shared-shell systems (Mallinson et al., 2003; Espinosa et al., 1999). The classification of intra- and intermolecular interactions is vital for crystal engineering and thus we need to go further than what is offered by classical X-ray diffraction. In principle, we need to know as much about the electronic properties of the building blocks as their ability to form crystal structures. Electron density studies both of the components and their crystal structures allow us closer to finding out what determines the outcome of the engineering process. Charge density studies gave an insight into the salt and formation for two crystal phases based on nicotinamide (Hathwar et al., 2010). The topological analysis of urea–barbituric acid polymorphs led to the conclusion that the shift of electron density towards a specific mesomeric form is responsible for the creation of synthon (Gryl et al., 2011). Hathwar et al. (2011) discussed synthon modularity and proposed the production of a transferable databank of multipolar parameters for charge density studies to use as a new tool for quantitative crystal engineering. In particular, research on transferable multipolar parameters towards applications in chemical crystallography has been carried out by several research groups (Dittrich et al., 2006; Dominiak et al., 2007; Chimpri & Macchi, 2013; Hübschle et al., 2007; Jelsch et al., 1998; Volkov et al., 2007; Zarychta et al., 2007). There are only a few examples of the application of the charge density method to crystal engineering described recently in Krawczuk & Macchi (2014).
The next step after obtaining the ab initio quantum chemical methods based on the coupled perturbed Kohn Sham (CPKS) approach give a reasonable approximation of static values of polarizability, hyperpolarizability, refractive indices and linear and non-linear electric susceptibilities (Dovesi, Orlando, Erba et al., 2014). One can account for the external electric field and internal crystal field effects using the modified rigorous local field theory (RLFT) approximation proposed by Seidler et al. (2014).
and prior to the experimental measurements should be the estimation of optical properties based on calculations of molecular/ionic polarizabilities, hyperpolarizabilities, refractive indices and linear and second-order nonlinear electric susceptibilities for crystals. The description of a variety of approaches available is not a subject of this paper. Let me just summarize that modernA final result of the engineering process is a material with the desired predicted properties and their validation. In this paper four different crystal phases will be presented: salts, co-crystals and coordination compounds all based on barbituric acid/barbiturates. Understanding their
and properties is a step towards obtaining more efficient optical materials with incorporated push–pull molecules as NLO chromophores.2. Results and discussion
2.1. Lidocaine barbiturate
Lidocaine barbiturate (lidbar) is a representative of organic salt crystals, which are nowadays considered to be the most promising organic NLO materials. Details of the crystallization have been previously described by Gryl et al. (2013). Crystals of lidbar belong to a polar/chiral P21, and have two barbiturate anions and two lidocaine cations in the (Fig. 2). There is a slight difference in the conformations of the lidocaine ions (Fig. S1 ), whereas the geometries of the two barbiturate ions A and B are almost identical. Each molecule/ion in the has its unique environment related to the interactions with neighboring species. Mapping of these interactions on a two-dimensional plot (McKinnon et al., 1998, 2007) gives a unique fingerprint of the molecule/ion and enables their quantification. Closer inspection of intermolecular interactions through Hirshfeld surfaces analysis revealed discrepancies in fingerprint plots for both cations and ions (Fig. 3). In particular, a wide spread of points from 0.8 to 2.4 Å for de and di can be attributed to several different interactions in the examined structure (Table S1 ). The fingerprints for the barbituric ions (Figs. 3a and b) show two spikes pointing to the lower left side of the drawing, indicating the presence of O⋯H interactions. Sets of diffuse points between the spikes are from H⋯H contacts within the dimers formed by barbiturate ions. The upper wing-shaped features can be attributed to C—H⋯π interactions. In anion B (Fig. 3b) the upper part of the plot is irregular and elongated which can be attributed to a long C5B—H5B⋯π contact of 3.73 Å. Fingerprint plots for lidocaine ions can be interpreted in a similar way (Figs. 3c and d). The only new feature of the fingerprint plots is an additional rounded shape located between two spikes, which indicates short H⋯H contacts.
In the structure of lidbar, lidocaine ions are arranged in a herringbone motif, which seems to be responsible for the structural polarity. Barbiturate anions form tapes surrounded by lidocaine cations in a pseudo-hexagonal arrangement. It is interesting to compare the P21 with four independent molecules in the (Janik, 2009). Crystal data along with details of the are presented in Table 1. The structure was previously solved in the P21/c with two independent molecules and a substantial disorder (Bambagiotti-Alberti et al., 2007). Lidocaine molecules in the are connected by four different hydrogen bonds of N—H⋯O type and by C—H⋯π interactions. The view along the b direction in lidbar and lid structures is presented in Fig. S2 . Introducing barbituric anions to the structure causes reorganization of the lidocaine cations, and the creation of new hydrogen-bond motifs. The formation of a structure built from two different species becomes more favorable than the existence of two separate homo-molecular systems. For comparison, fingerprint plots of lidocaine molecules taken from the lid structure are presented in Figs. 3(e)–(h). The observed variety of shape and color reflects a different percentage share of H⋯H, O⋯H and C—H⋯π interactions in lidocaine molecules, which can be correlated with their unequal conformations. Compared to lidbar there are approximately 10% more H⋯H contacts (the middle of the drawing) in the structure and the C—H⋯π interactions are more intense (wing shape motifs, top part of the plot); O⋯H contacts are again visible as two spikes.
of lidbar with that of lidocaine (lid). Crystals of lid belong to the
‡Because the structure contains exclusively light atoms, cannot be determined reliably. |
Optical properties of lidbar have been examined by means of ab initio calculations and experimental measurements. Static hyperpolarizabilities have been calculated both for the isolated ions at the experimental and optimized geometries using B3LYP/6-31G(2d,2p) and 6-311G(2d,2p) in GAUSSIAN09 (Frisch et al., 2009). Bulk properties such as refractive indices, linear and second-order nonlinear electric susceptibilities have been evaluated using the PB3LYP method and 6-31G(2d,2p) basis set as implemented in CRYSTAL14 code (Dovesi, Saunders et al., 2014). These results are summarized in Tables 2–4. Comparing values of static hyperpolarizabilities (βtot) of the isolated ions it is evident that lidocaine cations possess ca 4 times larger βtot values than barbiturate anions, which indicates their dominant role in the SHG effect. Second harmonic generation efficiency was determined experimentally with the modified Kurtz–Perry technique relative to KDP (Gryl et al., 2013). The observed relative deff for powdered lidbar is equal to that of KDP: deff = 1.00 for the 1000 nm laser line or even slightly higher, deff = 1.15, for the 800 nm line. In order to assess the quality of the crystalline material, crystals of lidbar were examined under the polarized microscope Zeiss Axio.Scope A1 using 100×, 200× and 500× magnification rates. Closer inspection of the revealed domain structures characteristic of ferroelectric crystal phases (Fig. 4a). The observed interference colors reflect the thickness of the crystal and its birefringence. This unique `crystal quality' was probably responsible for both difficulties in refractive indices measurements for problems with experimental charge density analysis. Nevertheless, an attempt was made to measure refractive indices for lidbar crystals using the immersion oil method (Hartshorne & Stuart, 1969). This method is based on the observation of bright halo lines (Becke lines) movement. Becke lines are created near the junction between two media – crystal and oil – and their movement can be observed when the image is thrown slightly out of focus. When the of a crystal matches that of the liquid, the crystal becomes almost invisible, with Becke lines faint and colored as a result of dispersion of n (El-Hinnawi, 1966). match is usually done for the Na D-line (λ = 589 nm). Becke line observation shows a yellow–orange line moving into the crystal and a blue line moving into the immersion oil, as the stage of the microscope is lowered against the objective. Crystals of lidbar were immersed in a liquid of known on a glass slide under the coverslip. Several immersion liquids were tested to determine three refractive indices in different orientations of the crystal: a mixture of xylene isomers (nD = 1.496, T = 298 K); a mixture of bromoform (nD = 1.598, T = 298 K) with methylene iodide (nD = 1.742, T = 298 K). The prepared sample was then moved under the polarizing microscope and viewed through 100×, 200× and 500× magnification. The optical indicatrix in the monoclinic system has only one axis fixed by symmetry, which coincides with the b axis. Because of the domain nature of the crystal the experimental nβ value could not be determined reliably. Theoretical values of n seem to be slightly underestimated compared with the experimental ones, which could be explained by dispersion effects (experimental values are reported for 598 nm whereas those for ∞ wavelength are theoretical), which seem to be more intense than for other data reported in Table 4. The moderate maximum birefringence of 0.13 can be correlated with the existence of barbiturate tapes with hydrogen bonds of the type N—H⋯O. The largest value of the coincides with the crystallographic b axis (Fig. 4b).
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2.2. Trisaquabis(barbiturato-κO4)copper(II)
Organic materials modified with inorganic components are interesting from the viewpoint of their outstanding properties as NLO materials as they combine two important features: high SHG response and high damage threshold. It is a real challenge to design a multicomponent material containing API molecules (ensuring appropriate donor–acceptor spatial distribution), an NLO chromophore (with large β hyperpolarizability) and an inorganic skeleton (for good mechanical properties) combined in a noncentrosymmetric with dipole moments oriented in one direction. A step towards achieving this goal is designing a two-component and when its properties are determined, modifying it with a third component. The structure of 2,2-trisaquabis(barbiturato-κO4)copper(II), abbreviated as Cubar, was previously reported by Xiong et al. (2003), but their method of synthesis and crystallization conditions were different (see supporting information for details). To the best of my knowledge, crystals of Cubar have never been examined from the viewpoint of either optical properties or charge density studies. Selected crystal data and measurement conditions are summarized in Table 5. The structure of Cubar adopts the symmetry of the polar Fdd2. The of Cubar is shown in Fig. 5(a). The central copper cation and O3 atom, from the water molecule, are both situated on a twofold axis on a special position 8a (..2, 0 0 z) of Fdd2. Each CuII cation is coordinated to five O atoms from two barbiturate ions (O6) and three water molecules (O1, O1′, O3) forming a slightly distorted square-pyramidal geometry shown in Fig. 5(b). The recognized coordination polyhedra form layers linked by barbiturate anions via hydrogen bonds of N—H⋯O and O—H⋯O types. Overall there are five crystallographically distinct hydrogen bonds marked a–e (Table S3 ). Packing of structural components in Cubar crystals (Figs. 6a and b) reveals ribbons of barbiturate anions arranged in intersecting tapes. The ribbons are formed by R22(8)-type hydrogen-bond motifs and are separated by copper coordination polyhedra. Detailed graph-set analysis of hydrogen bonds exposed a large number of complicated ring and chain motifs built of hydrogen bonds of O—H⋯O and/or O—H⋯N and enclosing Cu polyhedra. An example of two rings of R66(46) and R66(56) can be seen in Figs. 6(c) and (d).
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An experimental charge density study has been conducted in order to provide a deeper insight into the structure and bonding in Cubar. Several low-temperature, high-resolution X-ray diffraction data sets were collected to assess the data quality from different diffractometers. The results of that comparison will be presented elsewhere. In the best dataset low-energy electron contamination of the Mo miscrosource was eliminated by placing a thin aluminium filter in the collimator according to the procedure described by Macchi et al. (2011). Emphasis on charge density analysis was placed on the barbiturate ion to determine whether the mesomeric forms of barbituric acid cause the distinction between O6 and O2, O4 atoms resulting in the formation of the Cu—O6 bond. The multipole for Cubar was carried out using the Hansen–Coppens formalism (Hansen & Coppens, 1978) implemented in the XD2006 program package (Volkov et al., 2006). The multipole expansion was truncated at the hexadecapole level for Cu atoms, at the octapole level for the C, N and O atoms, and at the dipole level for H atoms. Symmetry restraints were employed on Cu1 and O3 atoms. The choice of local coordination environment is crucial for the appropriate description of the charge-density distribution. In the best model (the smallest R values and residual density peaks) mm2 was applied for the Cu1 and O3 atoms. All pseudoatoms were assigned core and spherical valence densities composed of relativistic wavefunctions reported by Su, Coppens and Macchi (Su & Coppens, 1998; Macchi & Coppens, 2001).
It is well known that the treatment of deformation density of the 3d transition metals is challenging due to large differences in radial extensions of 3d and 4s valence orbitals (Farrugia & Evans, 2005). It is difficult to obtain a reasonable estimate of 4s population from the diffraction data as the scattering of 4s electrons is only significant in the range (sin θ/λ) < 0.20. This part of the data contains few reflections and tends to be affected by systematic errors. A typical approach is to include the 4s population in the core density which is not refined (Farrugia et al., 2008; Scheins et al., 2010). This has been done for Cu atoms in Cubar. Attempts to refine the 4s population resulted in a negative charge on the Cu atom and an ambiguous residual density. In the final analysis Cu was treated as a neutral atom with the configuration [Ar]4s1. The expansion and contraction parameters of the H atoms were fixed at 1.13 for κ and 1.29 for κ′ (Volkov et al., 2001). The H-atom anisotropic displacement parameters (a.d.p.s) were estimated by the SHADE-2 web server (Madsen, 2006) and the obtained values were subsequently kept fixed during the For the O3 atom, situated in a special position, both symmetrically dependent H atoms had to be used to generate a.d.p.s. Each CuII cation is coordinated to five O atoms forming a slightly distorted square-pyramidal geometry. Four O atoms are located in the square base of the pyramid, whereas the fifth O3 atom is situated in the apex. This specific orientation of ligands is known to lead to an underpopulated d(x2 − y2) orbital (Sabino & Coppens, 2003). The population of the CuII d-orbitals was calculated using the d-pop option in XD2006. Subsequent searches with either minimal d(x2 − y2) or minimal d(z2) + d(x2 − y2) populations confirmed the validity of the chosen model.
The experimental deformation density maps show the typical characteristic features of the static maps. As expected the accumulation of charge density is located in the covalently bonded regions (Fig. 7a). The values of charge density along with the Laplacian for the Cu—O bond show that the character of the bonds is intermediate between the closed-shell and shared-shell interaction (Table 6). For the copper interactions with O atoms the values of ρ(r) and ∇2ρ(r) are comparable with those reported in the literature for the copper complexes (Farrugia et al., 2008). The slightly lower values of ρ(r) and ∇2ρ(r) for Cu1—O3 confirm the Jahn–Teller distortion: the Cu1—O3 bond is much weaker than both Cu1—O6 and Cu1—O1. Laplacian maps (Figs. 7b and c) indicate the apparent similarities for the O atoms of barbiturate ion O2 and O4. The O6 atom has a different spatial distribution as it is bonded to the copper central atom. These differences in the behavior of carbonyl O atoms might be correlated with the shift of electron density in barbituric acid molecule, prior to the formation. The existence of mesomeric forms might be influenced by many factors: the properties of co-crystallizing agents and/or solvent, ionic forces, temperature range, pressure etc. It is worth noting that among the three carbonyl O atoms O6 seems to be the most electronegative in that particular environment. The same situation has been observed for other barbiturate complexes (Gryl et al., 2010). This suggests a redistribution of electron density in a barbituric acid molecule towards a mesomeric form E prior to formation. Bond length analysis does not give a conclusive distinction between the two possible mesomeric forms E or F (C2=O2 1.24 Å; C4=O4 1.26 Å and C6—O6 1.28 Å).
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The Laplacian maps of the Cu atom in different orientations show the three dimensional spatial distribution and shape of the orbitals. Topological properties of the weak interactions are described in Table S3 . The weakest hydrogen-bond acceptor is the O6 atom, which is not surprising as O6 is involved in the Cu1—O6 interaction.
Optical properties of Cubar were determined both experimentally and theoretically. Refractive indices have been calculated utilizing the CRYSTAL14 code with PB3LYP/TZVP and measured using the immersion oil method using a mixture of xylene isomers (nD = 1.496, T = 298 K) with bromoform (nD = 1.598, T = 298 K), and a mixture of bromoform with methylene iodide (nD = 1.742, T = 298 K). The results are summarized in Table 4. The largest nγ coincides with the crystallographic a axis, the direction of Cu polyhedra layers. As Cubar crystallizes in the form of thin plates the nα was not determined with sufficient accuracy. Calculations of refractive indices provide the information that the crystals of Cubar are biaxial negative with a 2V angle bisected by the smallest The maximum birefringence is close to 0.17. Polarizability and hyperpolarizability have been calculated for the complex using the B3LYP method and TZVP basis set. χ(2) tensor components as well as d(2) tensor components (d(2) = 1/2χ(2)) shown in Table 3 reflect the unfavorable orientation of the dipole moments which almost completely cancel themselves out (Fig. 4). This can be seen by looking at the mutual orientation of barbiturate ligands in the Unfortunately, the bulk SHG effect could not be estimated with the modified Kurtz–Perry technique using 800 and 100 nm excitation due to strong absorption in that region.
2.3. Urea–barbituric acid co-crystal
Among three polymorphic forms of the urea–barbituric acid ; Gryl et al., 2008, 2011) the second one is polar (Cc urebar2) and thus interesting from the viewpoint of optical properties. The above-mentioned polymorphs are one of a very few examples of synthon found in the CSD database according to Mukherjee et al. (2011).
(Fig. 8Experimental charge density analysis was performed in order to confirm the hypothesis that different mesomeric forms of barbituric acid (Fig. 9) in solution contribute to different utilization of the same hydrogen-bond donor and acceptor sites. The obtained results undermined a belief that the formation of co-crystals limit phenomenon (Vishweshwar et al., 2005). Another goal was elucidation of mechanisms underlying the instability of the polar polymorph.
Carbonyl C=O bond-length alternation in urebar2 indicated a shift of electron density towards the known mesomeric form B of barbituric acid (Gryl et al., 2008). Topological analysis of charge density including Laplacian maps, electrostatic potential and net atomic charges indicated the distinct accepting properties of the barbiturate O atoms and showed a displacement of electron density towards a mesomeric form of higher stability. It was suggested that the redistribution of charge in the barbituric acid molecule in a particular environment influences the type of hydrogen bond formed and thus the different packing topology observed for the three polymorphs (Gryl et al., 2011). In order to confirm this hypothesis, Laplacian profiles along a O=C bond path have been analysed. Fig. 10 presents a comparison of profiles for O2=C2, O4=C4 and O6=C6 bonds in barbituric acid and O1=C1 bonds in the urea molecule. There are no significant differences between the profiles of O4=C4 and O6=C6 bonds, whereas the O2=C2 bond has altered characteristics. Bond critical points (BCPs) for O4=C4 and O6=C6 bonds are on the rising slope of the Laplacian both from theory and experiment. O2=C2 bond lengthening causes the redistribution of charge over a wider region, thus BCP can be found at lower values of the Laplacian (Fig. 10). Of course, the altered Laplacian profile for O2=C2 could be explained through dissimilarities in hydrogen-bond accepting properties. The O2 atom is an acceptor of two hydrogen bonds, whereas atoms O4 and O6 form one hydrogen bond each. At a first glance this could explain the apparent similarity between O4 and O6 atoms. We would expect the O1 atom of urea, which also participates as an acceptor of two hydrogen bonds, to be similar to the O2 atom of barbituric acid. However, this is not the case. The Laplacian profile of the O1=C1 bond is more similar to that of O4=C4 and O6=C6 than to O2=C2. This analysis clearly indicates that the resulting hydrogen-bond motifs are an effect of the change in molecular structure of barbituric acid and not the opposite. Values of QTAIM atomic charges and electrostatic potential distribution are both in agreement with this analysis (Gryl et al., 2011). The highest negative charge was found for the O2 atom, whereas the values for O4 and O6 atoms were similar. Differences observed in the electrostatic potential for all three polymorphic forms can be correlated with the intermolecular interactions within the close environment of the appropriate molecules, e.g. either barbituric acid or the urea molecule. These specific interactions are indeed a result of the changes in electronic structure of the molecules prior to the crystallization process. Charge density calculations enabled the investigation of the relative stability of all three polymorphic forms of the The electrostatic crystal binding energy was calculated using a combination of the exact potential and multipole methods (EP/MM; Volkov et al., 2004). The global minimum of the lattice energy for the structure corresponds to the most stable polymorphic form. The total binding energy was expressed using the electrostatic exchange–repulsion and dispersion components (Table 7). The experimental and theoretical results are in good agreement: the more stable form appears to be urebar1 (P21/c) and the less stable form is urebar2 (Cc). Indeed polar crystals left in the matrix solution at room temperature (ca 295 K) after several weeks transformed into the form with P21/c, which suggests that the Cc form is thermodynamically less stable. The differentiation of the polymorphs was also made through visualization of intermolecular interactions using Hirshfeld surfaces (Gryl et al., 2011). Fingerprint plots for barbituric acid molecules taken directly from the crystal structures (Fig. 11) confirmed the postulated differences between the molecule in a particular environment in a given polymorphic form. In all forms there can be observed two spikes pointing to the lower left side of the drawing indicating the presence of O⋯H interactions. Sets of diffuse points between the spikes in urebar1 and even more in urebar2 originate from H⋯H contacts within the dimers formed by barbiturate ions. The upper wing-shaped features can be attributed to C⋯H and N⋯H contacts. By the shape of fingerprint plots we can see a larger variety of interactions seen in urebar1 and urebar2 than in urebar3.
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Optical properties calculations were performed at the DFT/B3LYP level using GAUSSIAN09 (Frisch et al., 2009) to evaluate molecular polarizabilities, hyperpolarizabilities and dipole moments for urea and barbituric acid molecules. Both components have comparable molecular hyperpolarizabilities, while the of urea is several times higher. Preliminary calculations of static refractive indices and the first-order electric susceptibility tensor (χ) for the of urebar2 were performed using CRYSTAL14 (Dovesi, Saunders et al., 2014). Crystals of urebar2 are biaxial, positive (acute angle between optic axes 2V = 85.42°); the refractive indices in the directions of the principle axes are summarized in Table 3. Maximum birefringence is ca 0.14. Experimental measurements of SHG and refractive indices were impossible due to the instability of the urebar2 crystals. The small components of the susceptibility tensor are probably due to the antiparallel arrangement of urea and barbituric acid molecules (Fig. 8b) causing the apparent weakening of the resultant dipole moment.
2.4. Melamine barbital addition compound
The final example of an API-based optical material is the melamine barbital et al., 2014, 2015). The is polar with Pmn21. The consists of half of the building block molecules, as both barbital and melamine occupy positions on the mirror plane (2 a m . . of Pmn21) with z coordinates 0.0 and 0.5, respectively. Mutual orientation of the building blocks determines the observed structural features such as the crinkled tape motifs built of melamine and barbital (Fig. 12a), running in the [100] direction, and zigzag like chains, in the [001] direction, formed by barbital molecule hydrophobic side chains (Fig. 12b).
(melba). charge density and optical properties of melba have been already examined (GrylCharge-density studies revealed that the formation of melamine barbital et al., 2014).
is the result of two factors: the shift of electron density in a solution towards a mesomeric form of barbital and a lock-key molecular recognition of both barbital and melamine molecules (GrylFingerprint plots for barbital and melamine in melba (Fig. 13) reflect short O⋯H and N⋯H contacts (spikes pointing to the lower left side of the drawing). Sets of diffuse points in between the spikes come from H⋯H contacts within the dimers formed between melamine and barbital molecules. The single upper wing-shaped feature for barbital and a single lower wing-shaped feature for melamine can both be attributed to C—H⋯π interactions. In both plots the central and dominant part of the drawing can be attributed to H⋯H interactions.
Topological analysis of isolated molecules of melamine and barbital, and the B of barbital, derived analogously to that of barbituric acid (Fig. 9). The displacement of electron density differentiates the ability of O2A and O4A to form hydrogen bonds. Net atomic charges calculated using different partitioning schemes, stockholder charges and QTAIM charges showed the same trend of higher charge on O4A than on O2A confirming the geometrical analysis. Differentiation of O=C bonds in barbital is also visible through the analysis of Laplacian profiles (Fig. 14).
indicated the redistribution of electron density towards a mesomeric formFor both O2=C2 and O4=C4 polarization of the bond is more pronounced in the experimental model than in that derived from theory. For C2A=O2A, bond transition from optimized to experimental geometry results in a changed position of the BCP. Both O2A and O4A participate in one hydrogen bond each, but O2A is engaged in a stronger hydrogen bond. This can be correlated with lengthening of the C=O bond and then electron density is distributed over a wider region with more negative ∇2ρ values. In the structure of melba all hydrogen-bond donors and acceptors are engaged in hydrogen-bond formation, except N1b which is located in close vicinity to the barbital ring gravity center. Amongst the present hydrogen bonds, N1a—H1a⋯N3b has an intermediate character between closed- and shared-shell interactions. This could be regarded as competition between N1a and N3b for the H1a atom. The remaining hydrogen bonds of the two fused R22(8) rings act as a clamp enhancing the strength of the N1a—H1a⋯N3b bond. When comparing the structures of melba and urebar2 the differences between O2 and O4 atoms are less pronounced. However, in both cases of polar structures the same mesomeric form B of barbital and that of barbituric acid could be recognized.
Optical properties of melba were determined both experimentally (SHG and refractive indices measurements) and theoretically (calculations of molecular polarizabilities, hyperpolarizabilities and linear and second-order nonlinear electric susceptibilities of the molecular crystal). Details of the calculations are presented in Gryl et al. (2014). Refractive indices both calculated with and without the use of the charge-polarizing field show relatively good agreement with the values obtained from experiment (Table 4). It is worth noting that introducing an external dressing electric field in the calculations enhances the values of the and hyperpolarizability, and causes a decrease in polarizability values. Experimental SHG efficiency measured with a modified Kurtz–Perry method for the powdered sample was ca 2 times larger than that of KDP (deff = 1.86 for the 800 nm excitation line). Phase-matching conditions were determined theoretically with a maximum deff of ca 3 pmV−1 (for comparison, the standard SHG measurements for KDP has deff = 0.35 pm V−1). The key NLO chromophore in melba crystal is barbital with hyperpolarizability (βtot) 3–4 times larger than for melamine (Table 2). The desired non-centrosymmetric crystal packing is, however, a result of the lock–key molecular recognition of both components. The small geometrical deformation of melamine in the with respect to the optimized geometry causes a slight enhancement of the observed bulk effects.
3. Conclusions and future prospects
Directed self-assembly of barbituric acid or its derivatives with organic components possessing suitable donor–acceptor properties or/and with inorganic salts gives the opportunity for novel solutions in non-linear optics. The conducted research proved that combining optical properties in the micro-scale (atoms, molecules) with those of a macro-scale (derived for crystal structure) is crucial for the optimization of crystal engineering methods. Each of the presented materials contributes to understanding API-based crystal phases. In the pure organic materials both component molecules had an impact on the creation of crystal structures. In the mixed organic–inorganic materials the same carbonyl oxygen atom (O6) interacts with a central metal ion, which suggests that it is the most electronegative under these conditions. The concomitant analysis of bond lengths and net charges calculated both from experimental and theoretical data showed the influence of the mesomeric forms of barbituric acid and barbital on the creation of specific hydrogen-bond patterns in the studied crystal structures. The relative contributions of weak interactions to the Hirshfeld surface area of barbituric acid molecules, barbiturate ions and barbital molecules in the organic crystals are presented in Fig. 15. Compared with barbiturate moieties there is a considerably larger contribution of H…H interactions in the barbital The percentages of N⋯H and O⋯H interactions do not change significantly in the structures containing barbituric acid molecules and barbiturate ions. It is not surprising that in the lidbar structure the ratio of C⋯H interactions increases at the expense of H⋯H interactions. Analogously the contribution of N⋯H interactions in barbital increases and O⋯H decreases with respect to the remaining crystal structures. The barbituric acid molecule can be considered a better NLO chromophore (Table 1). The barbital molecule shows limited synthon formation flexibility in comparison to barbituric acid as a result of sterical hindrance, and less possibilities for shifting the electron density towards specific mesomeric forms in solution. An attempt to evaluate the optical properties of the selected materials both theoretically and experimentally gave promising results and showed that it is possible to utilize API molecules as building blocks for noncentrosymmetric crystal structures. Introducing molecules with large molecular hyperpolarizabilies – push–pull NLO chromophores – into a known API system is the next step towards obtaining outstanding optical materials.
Supporting information
10.1107/S2052520615013505/dq5012sup1.cif
contains datablock lid. DOI:Structure factors: contains datablock shelx. DOI: 10.1107/S2052520615013505/dq5012lidsup2.hkl
Structure factors: contains datablock XD. DOI: 10.1107/S2052520615013505/dq5012xd_Cubarsup3.hkl
Supporting information file. DOI: 10.1107/S2052520615013505/dq5012lidsup4.cml
Supporting tables and figures. DOI: 10.1107/S2052520615013505/dq5012sup5.pdf
Data collection: CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.52 (release 06-11-2009 CrysAlis171 .NET) (compiled Nov 6 2009,16:24:50) for xd_Cubar. Cell
CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.52 (release 06-11-2009 CrysAlis171 .NET) (compiled Nov 6 2009,16:24:50) for xd_Cubar. Data reduction: CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.52 (release 06-11-2009 CrysAlis171 .NET) (compiled Nov 6 2009,16:24:50) for xd_Cubar. Program(s) used to solve structure: SIR97 (ALTOMARE et al., 1999) for lid. Program(s) used to refine structure: SHELXL2013 (Sheldrick, 2013) for lid; Volkov et al., (2006) for xd_Cubar. Molecular graphics: ORTEP-3 (Farrugia, 1997) for lid; Volkov et al., (2006) for xd_Cubar. Software used to prepare material for publication: SHELXL2013 (Sheldrick, 2013) for lid; Volkov et al., (2006) for xd_Cubar.C14H22N2O | F(000) = 1024 |
Mr = 234.33 | Dx = 1.109 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
a = 12.8666 (1) Å | Cell parameters from 43893 reflections |
b = 13.6966 (1) Å | θ = 3.2–27.1° |
c = 16.2049 (1) Å | µ = 0.07 mm−1 |
β = 100.686 (1)° | T = 112 K |
V = 2806.24 (4) Å3 | Block, colourless |
Z = 8 | 0.40 × 0.25 × 0.15 mm |
SuperNova, Dual, Cu at zero, Atlas diffractometer | 12599 reflections with I > 2σ(I) |
Radiation source: SuperNova (Mo) X-ray Source | Rint = 0.038 |
Mirror monochromator | θmax = 30.0°, θmin = 3.0° |
Absorption correction: multi-scan CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.52 (release 06-11-2009 CrysAlis171 .NET) (compiled Nov 6 2009,16:24:50) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. | h = −18→18 |
Tmin = 0.845, Tmax = 1.000 | k = −19→19 |
32520 measured reflections | l = −22→22 |
16346 independent reflections |
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.046 | w = 1/[σ2(Fo2) + (0.0472P)2 + 0.348P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.119 | (Δ/σ)max = 0.001 |
S = 1.06 | Δρmax = 0.22 e Å−3 |
16346 reflections | Δρmin = −0.21 e Å−3 |
641 parameters | Absolute structure: Flack x determined using 4986 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons and Flack (2004), Acta Cryst. A60, s61). |
5 restraints | Absolute structure parameter: 0.4 (3) |
C14H22N2O | V = 2806.24 (4) Å3 |
Mr = 234.33 | Z = 8 |
Monoclinic, P21 | Mo Kα radiation |
a = 12.8666 (1) Å | µ = 0.07 mm−1 |
b = 13.6966 (1) Å | T = 112 K |
c = 16.2049 (1) Å | 0.40 × 0.25 × 0.15 mm |
β = 100.686 (1)° |
SuperNova, Dual, Cu at zero, Atlas diffractometer | 16346 independent reflections |
Absorption correction: multi-scan CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.52 (release 06-11-2009 CrysAlis171 .NET) (compiled Nov 6 2009,16:24:50) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. | 12599 reflections with I > 2σ(I) |
Tmin = 0.845, Tmax = 1.000 | Rint = 0.038 |
32520 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.119 | Δρmax = 0.22 e Å−3 |
S = 1.06 | Δρmin = −0.21 e Å−3 |
16346 reflections | Absolute structure: Flack x determined using 4986 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons and Flack (2004), Acta Cryst. A60, s61). |
641 parameters | Absolute structure parameter: 0.4 (3) |
5 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N3D | 0.88131 (14) | 0.34710 (15) | 0.42485 (11) | 0.0279 (4) | |
N3A | 1.93577 (15) | 0.50319 (15) | 1.01637 (12) | 0.0297 (4) | |
O1A | 1.65298 (12) | 0.45830 (13) | 0.96812 (10) | 0.0336 (4) | |
N2C | 1.27572 (15) | 0.26881 (15) | 0.58906 (12) | 0.0282 (4) | |
H2C | 1.3418 (12) | 0.250 (2) | 0.6093 (15) | 0.034* | |
O1B | 1.45398 (12) | 0.25043 (13) | 0.72679 (10) | 0.0320 (4) | |
O1D | 0.94226 (13) | 0.44297 (15) | 0.23040 (11) | 0.0408 (5) | |
N2B | 1.55158 (14) | 0.34874 (15) | 0.82495 (11) | 0.0274 (4) | |
H2B | 1.548 (2) | 0.3831 (17) | 0.8711 (11) | 0.033* | |
O1C | 1.14047 (13) | 0.24302 (14) | 0.47929 (10) | 0.0361 (4) | |
C4B | 1.65715 (17) | 0.45224 (18) | 0.75173 (13) | 0.0273 (5) | |
N3B | 1.40709 (14) | 0.35288 (15) | 0.92295 (11) | 0.0255 (4) | |
C2A | 1.82821 (18) | 0.52023 (19) | 0.97102 (14) | 0.0305 (5) | |
H2A1 | 1.8239 | 0.5011 | 0.9116 | 0.037* | |
H2A2 | 1.8125 | 0.5909 | 0.9723 | 0.037* | |
C2B | 1.37476 (17) | 0.30700 (18) | 0.84095 (13) | 0.0270 (5) | |
H2B1 | 1.3169 | 0.3459 | 0.8076 | 0.032* | |
H2B2 | 1.3466 | 0.2411 | 0.8489 | 0.032* | |
C7B | 1.79662 (19) | 0.2982 (2) | 0.74248 (15) | 0.0362 (6) | |
H7B | 1.8448 | 0.2464 | 0.7391 | 0.043* | |
C4C | 1.14609 (17) | 0.29250 (19) | 0.68015 (14) | 0.0303 (5) | |
C1B | 1.46421 (16) | 0.29793 (17) | 0.79205 (13) | 0.0255 (5) | |
C7D | 1.22517 (18) | 0.23750 (19) | 0.21888 (15) | 0.0313 (5) | |
H7D | 1.2338 | 0.1777 | 0.1912 | 0.038* | |
C8B | 1.70850 (18) | 0.28195 (19) | 0.77989 (14) | 0.0301 (5) | |
N2D | 1.03698 (14) | 0.35332 (16) | 0.33571 (11) | 0.0275 (4) | |
H2D | 1.035 (2) | 0.3285 (18) | 0.3860 (10) | 0.033* | |
C8C | 1.24998 (19) | 0.42987 (18) | 0.64351 (14) | 0.0313 (5) | |
N3C | 1.41745 (16) | 0.17580 (17) | 0.51400 (12) | 0.0334 (4) | |
C16 | 1.58204 (19) | 0.53541 (19) | 0.75773 (16) | 0.0330 (5) | |
H16A | 1.5907 | 0.5573 | 0.8162 | 0.040* | |
H16B | 1.5091 | 0.5133 | 0.7384 | 0.040* | |
H16C | 1.5975 | 0.5897 | 0.7224 | 0.040* | |
C27 | 1.0562 (2) | 0.1712 (2) | 0.25609 (18) | 0.0387 (6) | |
H27A | 1.0731 | 0.1162 | 0.2222 | 0.046* | |
H27B | 0.9860 | 0.1967 | 0.2318 | 0.046* | |
H27C | 1.0565 | 0.1489 | 0.3136 | 0.046* | |
C5B | 1.74531 (18) | 0.4653 (2) | 0.71431 (15) | 0.0322 (5) | |
H5B | 1.7580 | 0.5271 | 0.6914 | 0.039* | |
N2A | 1.77861 (15) | 0.42448 (16) | 1.08286 (12) | 0.0283 (4) | |
H2A | 1.8437 (12) | 0.439 (2) | 1.1085 (15) | 0.034* | |
C3B | 1.64039 (17) | 0.36028 (18) | 0.78432 (13) | 0.0259 (5) | |
C3A | 1.71260 (17) | 0.36864 (18) | 1.12741 (13) | 0.0260 (5) | |
C1A | 1.74468 (17) | 0.46413 (18) | 1.00710 (13) | 0.0268 (5) | |
C7C | 1.2013 (2) | 0.49005 (19) | 0.69444 (15) | 0.0368 (6) | |
H7C | 1.2194 | 0.5573 | 0.6994 | 0.044* | |
C3D | 1.12693 (17) | 0.33953 (18) | 0.29674 (13) | 0.0268 (5) | |
C3C | 1.22124 (17) | 0.33157 (18) | 0.63719 (13) | 0.0266 (5) | |
C19 | 1.32800 (19) | 0.4194 (2) | 0.94539 (16) | 0.0354 (5) | |
H19A | 1.2674 | 0.3809 | 0.9575 | 0.042* | |
H19B | 1.3016 | 0.4626 | 0.8971 | 0.042* | |
C8A | 1.64400 (17) | 0.41670 (19) | 1.17154 (14) | 0.0281 (5) | |
C6A | 1.59105 (19) | 0.2593 (2) | 1.21692 (16) | 0.0367 (6) | |
H6A | 1.5494 | 0.2217 | 1.2478 | 0.044* | |
C1D | 0.95081 (17) | 0.40186 (18) | 0.29903 (14) | 0.0276 (5) | |
C23 | 1.4722 (2) | 0.2533 (2) | 0.47746 (16) | 0.0436 (6) | |
H23A | 1.4236 | 0.3093 | 0.4634 | 0.052* | |
H23B | 1.4914 | 0.2293 | 0.4246 | 0.052* | |
C25 | 1.4735 (2) | 0.0823 (2) | 0.52112 (17) | 0.0430 (7) | |
H25A | 1.5502 | 0.0942 | 0.5255 | 0.052* | |
H25B | 1.4489 | 0.0431 | 0.4699 | 0.052* | |
C10 | 1.7952 (2) | 0.2175 (2) | 1.07838 (18) | 0.0439 (6) | |
H10A | 1.7948 | 0.1470 | 1.0883 | 0.053* | |
H10B | 1.8670 | 0.2429 | 1.0967 | 0.053* | |
H10C | 1.7719 | 0.2306 | 1.0183 | 0.053* | |
C15 | 1.6886 (2) | 0.1839 (2) | 0.81497 (18) | 0.0401 (6) | |
H15A | 1.6703 | 0.1921 | 0.8706 | 0.048* | |
H15B | 1.7524 | 0.1437 | 0.8197 | 0.048* | |
H15C | 1.6300 | 0.1517 | 0.7775 | 0.048* | |
C8D | 1.13737 (17) | 0.25038 (18) | 0.25712 (14) | 0.0285 (5) | |
C5A | 1.6594 (2) | 0.2133 (2) | 1.17249 (16) | 0.0356 (6) | |
H5A | 1.6640 | 0.1441 | 1.1730 | 0.043* | |
C5C | 1.09979 (18) | 0.3555 (2) | 0.73067 (15) | 0.0354 (6) | |
H5C | 1.0487 | 0.3307 | 0.7607 | 0.042* | |
C24 | 1.5712 (2) | 0.2875 (3) | 0.5358 (2) | 0.0554 (8) | |
H24A | 1.5541 | 0.3045 | 0.5904 | 0.066* | |
H24B | 1.5997 | 0.3450 | 0.5116 | 0.066* | |
H24C | 1.6241 | 0.2351 | 0.5430 | 0.066* | |
C1C | 1.23253 (18) | 0.23071 (18) | 0.51390 (13) | 0.0278 (5) | |
C4D | 1.20056 (18) | 0.41472 (19) | 0.29891 (14) | 0.0310 (5) | |
C6C | 1.1269 (2) | 0.4529 (2) | 0.73787 (16) | 0.0394 (6) | |
H6C | 1.0945 | 0.4946 | 0.7726 | 0.047* | |
C20 | 1.3723 (3) | 0.4817 (2) | 1.02155 (18) | 0.0489 (7) | |
H20A | 1.3907 | 0.4398 | 1.0711 | 0.059* | |
H20B | 1.3190 | 0.5295 | 1.0310 | 0.059* | |
H20C | 1.4357 | 0.5160 | 1.0116 | 0.059* | |
C11 | 2.0009 (2) | 0.5913 (2) | 1.02728 (17) | 0.0387 (6) | |
H11A | 1.9865 | 0.6305 | 0.9750 | 0.046* | |
H11B | 2.0765 | 0.5727 | 1.0377 | 0.046* | |
C5D | 1.28728 (19) | 0.3984 (2) | 0.26028 (16) | 0.0342 (5) | |
H5D | 1.3387 | 0.4483 | 0.2610 | 0.041* | |
C2D | 0.86182 (18) | 0.4056 (2) | 0.34840 (15) | 0.0336 (5) | |
H2D1 | 0.8505 | 0.4743 | 0.3635 | 0.040* | |
H2D2 | 0.7960 | 0.3824 | 0.3121 | 0.040* | |
C4A | 1.72120 (17) | 0.26696 (18) | 1.12724 (14) | 0.0301 (5) | |
C7A | 1.58369 (18) | 0.3598 (2) | 1.21624 (15) | 0.0333 (5) | |
H7A | 1.5367 | 0.3908 | 1.2468 | 0.040* | |
C6D | 1.29962 (19) | 0.3106 (2) | 0.22087 (15) | 0.0364 (6) | |
H6D | 1.3594 | 0.3006 | 0.1951 | 0.044* | |
C22 | 1.1196 (2) | 0.1853 (2) | 0.67450 (17) | 0.0409 (6) | |
H22A | 1.0748 | 0.1692 | 0.7154 | 0.049* | |
H22B | 1.1849 | 0.1470 | 0.6867 | 0.049* | |
H22C | 1.0817 | 0.1700 | 0.6178 | 0.049* | |
C9 | 1.6378 (2) | 0.5263 (2) | 1.17147 (17) | 0.0383 (6) | |
H9A | 1.6056 | 0.5491 | 1.1152 | 0.046* | |
H9B | 1.7092 | 0.5535 | 1.1872 | 0.046* | |
H9C | 1.5946 | 0.5476 | 1.2120 | 0.046* | |
C13 | 1.9855 (2) | 0.4196 (2) | 0.98207 (16) | 0.0384 (6) | |
H13A | 2.0154 | 0.4414 | 0.9331 | 0.046* | |
H13B | 1.9310 | 0.3696 | 0.9623 | 0.046* | |
C12 | 1.9788 (3) | 0.6524 (2) | 1.09949 (19) | 0.0523 (8) | |
H12A | 1.9050 | 0.6743 | 1.0877 | 0.063* | |
H12B | 2.0258 | 0.7093 | 1.1067 | 0.063* | |
H12C | 1.9912 | 0.6133 | 1.1510 | 0.063* | |
C21 | 1.3316 (2) | 0.4691 (2) | 0.59656 (17) | 0.0416 (6) | |
H21A | 1.3427 | 0.5388 | 0.6088 | 0.050* | |
H21B | 1.3070 | 0.4601 | 0.5361 | 0.050* | |
H21C | 1.3984 | 0.4339 | 0.6142 | 0.050* | |
C26 | 1.4549 (3) | 0.0257 (2) | 0.59733 (18) | 0.0509 (8) | |
H26A | 1.4793 | 0.0644 | 0.6481 | 0.061* | |
H26B | 1.4942 | −0.0359 | 0.6010 | 0.061* | |
H26C | 1.3792 | 0.0120 | 0.5922 | 0.061* | |
C2C | 1.3067 (2) | 0.1672 (2) | 0.47446 (15) | 0.0360 (6) | |
H2C1 | 1.2848 | 0.0982 | 0.4773 | 0.043* | |
H2C2 | 1.2993 | 0.1849 | 0.4144 | 0.043* | |
C6B | 1.81431 (19) | 0.3891 (2) | 0.71034 (15) | 0.0350 (6) | |
H6B | 1.8746 | 0.3990 | 0.6853 | 0.042* | |
C14 | 2.0729 (2) | 0.3742 (2) | 1.04683 (18) | 0.0474 (7) | |
H14A | 2.1305 | 0.4213 | 1.0622 | 0.057* | |
H14B | 2.0998 | 0.3156 | 1.0231 | 0.057* | |
H14C | 2.0446 | 0.3563 | 1.0969 | 0.057* | |
C18 | 1.3692 (2) | 0.2154 (2) | 1.01699 (16) | 0.0443 (7) | |
H18A | 1.3229 | 0.2543 | 1.0458 | 0.053* | |
H18B | 1.4059 | 0.1661 | 1.0556 | 0.053* | |
H18C | 1.3268 | 0.1829 | 0.9682 | 0.053* | |
C30 | 0.8662 (3) | 0.1810 (2) | 0.4816 (2) | 0.0505 (7) | |
H30A | 0.9435 | 0.1784 | 0.4894 | 0.061* | |
H30B | 0.8368 | 0.1164 | 0.4651 | 0.061* | |
H30C | 0.8454 | 0.2008 | 0.5344 | 0.061* | |
C29 | 0.8244 (2) | 0.2544 (2) | 0.41364 (16) | 0.0402 (6) | |
H29A | 0.8303 | 0.2266 | 0.3583 | 0.048* | |
H29B | 0.7485 | 0.2664 | 0.4137 | 0.048* | |
C28 | 1.1855 (2) | 0.5106 (2) | 0.34079 (18) | 0.0430 (6) | |
H28A | 1.2499 | 0.5500 | 0.3451 | 0.052* | |
H28B | 1.1709 | 0.4984 | 0.3971 | 0.052* | |
H28C | 1.1259 | 0.5459 | 0.3074 | 0.052* | |
C31 | 0.8611 (2) | 0.4006 (2) | 0.49857 (16) | 0.0420 (6) | |
H31A | 0.8597 | 0.3541 | 0.5451 | 0.050* | |
H31B | 0.7908 | 0.4323 | 0.4849 | 0.050* | |
C32 | 0.9443 (3) | 0.4774 (2) | 0.5267 (2) | 0.0616 (9) | |
H32A | 1.0143 | 0.4466 | 0.5379 | 0.074* | |
H32B | 0.9307 | 0.5088 | 0.5780 | 0.074* | |
H32C | 0.9420 | 0.5265 | 0.4824 | 0.074* | |
C17 | 1.45033 (18) | 0.28203 (19) | 0.98788 (14) | 0.0317 (5) | |
H17A | 1.4887 | 0.3181 | 1.0372 | 0.038* | |
H17B | 1.5025 | 0.2408 | 0.9663 | 0.038* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N3D | 0.0296 (9) | 0.0315 (11) | 0.0233 (8) | 0.0014 (8) | 0.0068 (7) | 0.0040 (8) |
N3A | 0.0256 (9) | 0.0342 (11) | 0.0300 (9) | −0.0025 (8) | 0.0073 (8) | 0.0013 (8) |
O1A | 0.0279 (8) | 0.0426 (10) | 0.0281 (8) | −0.0045 (7) | −0.0003 (7) | −0.0026 (7) |
N2C | 0.0262 (9) | 0.0317 (11) | 0.0257 (9) | 0.0072 (8) | 0.0019 (8) | −0.0034 (8) |
O1B | 0.0293 (8) | 0.0380 (10) | 0.0277 (8) | 0.0005 (7) | 0.0030 (6) | −0.0071 (7) |
O1D | 0.0316 (8) | 0.0585 (13) | 0.0314 (9) | −0.0005 (8) | 0.0031 (7) | 0.0177 (8) |
N2B | 0.0251 (9) | 0.0326 (11) | 0.0259 (9) | −0.0041 (8) | 0.0087 (7) | −0.0049 (8) |
O1C | 0.0314 (8) | 0.0464 (11) | 0.0281 (8) | 0.0037 (8) | −0.0010 (7) | 0.0034 (8) |
C4B | 0.0251 (10) | 0.0329 (13) | 0.0227 (10) | −0.0015 (9) | 0.0013 (8) | −0.0010 (9) |
N3B | 0.0248 (9) | 0.0275 (10) | 0.0238 (8) | −0.0015 (8) | 0.0034 (7) | −0.0023 (8) |
C2A | 0.0313 (12) | 0.0344 (14) | 0.0262 (11) | −0.0001 (10) | 0.0062 (9) | 0.0034 (10) |
C2B | 0.0233 (10) | 0.0320 (13) | 0.0254 (10) | −0.0029 (9) | 0.0041 (8) | −0.0012 (9) |
C7B | 0.0272 (11) | 0.0483 (16) | 0.0333 (12) | 0.0067 (11) | 0.0057 (10) | −0.0020 (11) |
C4C | 0.0243 (10) | 0.0353 (13) | 0.0293 (11) | 0.0019 (10) | 0.0000 (9) | 0.0034 (10) |
C1B | 0.0238 (10) | 0.0270 (12) | 0.0252 (10) | 0.0011 (9) | 0.0031 (8) | 0.0019 (9) |
C7D | 0.0309 (11) | 0.0328 (13) | 0.0297 (11) | 0.0051 (10) | 0.0046 (9) | −0.0020 (10) |
C8B | 0.0264 (10) | 0.0348 (13) | 0.0282 (11) | 0.0014 (9) | 0.0028 (9) | −0.0007 (9) |
N2D | 0.0263 (9) | 0.0339 (11) | 0.0234 (9) | 0.0023 (8) | 0.0074 (7) | 0.0068 (8) |
C8C | 0.0309 (11) | 0.0329 (13) | 0.0279 (11) | 0.0020 (10) | −0.0001 (9) | 0.0041 (10) |
N3C | 0.0322 (10) | 0.0382 (12) | 0.0305 (10) | 0.0082 (9) | 0.0077 (8) | −0.0008 (9) |
C16 | 0.0332 (12) | 0.0289 (13) | 0.0361 (12) | 0.0003 (10) | 0.0043 (10) | 0.0005 (10) |
C27 | 0.0360 (13) | 0.0339 (14) | 0.0469 (14) | −0.0027 (11) | 0.0091 (11) | 0.0001 (12) |
C5B | 0.0307 (12) | 0.0395 (14) | 0.0266 (11) | −0.0065 (10) | 0.0061 (9) | 0.0019 (10) |
N2A | 0.0224 (9) | 0.0347 (11) | 0.0274 (9) | −0.0047 (8) | 0.0041 (7) | 0.0013 (8) |
C3B | 0.0220 (10) | 0.0335 (13) | 0.0225 (10) | −0.0024 (9) | 0.0045 (8) | −0.0024 (9) |
C3A | 0.0233 (10) | 0.0307 (12) | 0.0228 (10) | −0.0035 (9) | 0.0014 (8) | 0.0025 (9) |
C1A | 0.0277 (11) | 0.0279 (12) | 0.0252 (10) | −0.0002 (9) | 0.0059 (9) | −0.0046 (9) |
C7C | 0.0459 (14) | 0.0287 (13) | 0.0336 (12) | 0.0078 (11) | 0.0011 (11) | −0.0008 (10) |
C3D | 0.0247 (10) | 0.0319 (13) | 0.0240 (10) | 0.0002 (9) | 0.0053 (8) | 0.0034 (9) |
C3C | 0.0224 (10) | 0.0321 (13) | 0.0237 (10) | 0.0027 (9) | 0.0002 (8) | 0.0005 (9) |
C19 | 0.0332 (12) | 0.0365 (14) | 0.0366 (13) | 0.0045 (10) | 0.0067 (10) | −0.0053 (11) |
C8A | 0.0243 (10) | 0.0330 (13) | 0.0260 (10) | −0.0035 (9) | 0.0021 (9) | −0.0008 (9) |
C6A | 0.0316 (12) | 0.0416 (15) | 0.0360 (13) | −0.0104 (11) | 0.0043 (10) | 0.0096 (11) |
C1D | 0.0259 (11) | 0.0312 (13) | 0.0245 (10) | −0.0014 (9) | 0.0018 (9) | 0.0036 (9) |
C23 | 0.0441 (15) | 0.0511 (17) | 0.0380 (14) | 0.0056 (13) | 0.0142 (12) | 0.0060 (13) |
C25 | 0.0455 (16) | 0.0456 (16) | 0.0389 (14) | 0.0137 (13) | 0.0108 (12) | −0.0040 (12) |
C10 | 0.0431 (15) | 0.0407 (16) | 0.0498 (16) | 0.0056 (12) | 0.0134 (13) | 0.0001 (13) |
C15 | 0.0391 (14) | 0.0358 (14) | 0.0454 (14) | 0.0049 (11) | 0.0073 (12) | 0.0050 (12) |
C8D | 0.0256 (10) | 0.0314 (12) | 0.0272 (10) | 0.0017 (9) | 0.0016 (9) | 0.0034 (10) |
C5A | 0.0351 (13) | 0.0290 (12) | 0.0408 (13) | −0.0022 (10) | 0.0024 (11) | 0.0063 (10) |
C5C | 0.0251 (11) | 0.0492 (16) | 0.0328 (12) | 0.0093 (11) | 0.0077 (9) | 0.0042 (11) |
C24 | 0.0420 (15) | 0.064 (2) | 0.0634 (19) | −0.0048 (15) | 0.0174 (14) | 0.0043 (16) |
C1C | 0.0318 (11) | 0.0276 (12) | 0.0231 (10) | 0.0010 (9) | 0.0026 (9) | 0.0030 (9) |
C4D | 0.0296 (11) | 0.0330 (13) | 0.0300 (11) | −0.0021 (10) | 0.0048 (9) | −0.0012 (10) |
C6C | 0.0377 (13) | 0.0459 (16) | 0.0337 (12) | 0.0191 (12) | 0.0043 (10) | −0.0033 (11) |
C20 | 0.0604 (18) | 0.0421 (17) | 0.0423 (15) | 0.0095 (14) | 0.0044 (13) | −0.0126 (13) |
C11 | 0.0332 (13) | 0.0461 (16) | 0.0373 (13) | −0.0117 (11) | 0.0080 (11) | 0.0067 (11) |
C5D | 0.0276 (11) | 0.0377 (14) | 0.0386 (13) | −0.0064 (10) | 0.0092 (10) | −0.0010 (11) |
C2D | 0.0279 (11) | 0.0427 (15) | 0.0305 (11) | 0.0066 (10) | 0.0057 (9) | 0.0111 (11) |
C4A | 0.0268 (11) | 0.0307 (13) | 0.0312 (11) | 0.0015 (9) | 0.0014 (9) | 0.0002 (9) |
C7A | 0.0263 (11) | 0.0443 (15) | 0.0301 (11) | −0.0053 (10) | 0.0076 (9) | −0.0029 (11) |
C6D | 0.0271 (11) | 0.0498 (16) | 0.0332 (12) | 0.0023 (11) | 0.0084 (10) | 0.0012 (12) |
C22 | 0.0446 (15) | 0.0404 (15) | 0.0369 (13) | −0.0107 (12) | 0.0050 (12) | 0.0042 (12) |
C9 | 0.0409 (14) | 0.0347 (14) | 0.0404 (13) | −0.0016 (11) | 0.0103 (11) | −0.0060 (11) |
C13 | 0.0333 (12) | 0.0480 (16) | 0.0357 (13) | 0.0043 (12) | 0.0111 (11) | −0.0028 (12) |
C12 | 0.068 (2) | 0.0437 (17) | 0.0434 (15) | −0.0144 (15) | 0.0047 (15) | −0.0031 (13) |
C21 | 0.0443 (14) | 0.0405 (15) | 0.0391 (14) | −0.0085 (12) | 0.0058 (12) | 0.0055 (11) |
C26 | 0.0630 (19) | 0.0459 (17) | 0.0411 (14) | 0.0141 (15) | 0.0023 (14) | 0.0034 (13) |
C2C | 0.0392 (13) | 0.0386 (15) | 0.0283 (12) | 0.0043 (11) | 0.0016 (10) | −0.0068 (10) |
C6B | 0.0266 (11) | 0.0514 (17) | 0.0287 (11) | −0.0037 (11) | 0.0096 (9) | −0.0004 (11) |
C14 | 0.0370 (14) | 0.0573 (19) | 0.0497 (16) | 0.0112 (13) | 0.0127 (12) | 0.0023 (14) |
C18 | 0.0618 (18) | 0.0402 (15) | 0.0330 (13) | −0.0100 (13) | 0.0143 (12) | 0.0038 (11) |
C30 | 0.0595 (18) | 0.0332 (15) | 0.0554 (17) | −0.0057 (13) | 0.0021 (15) | 0.0070 (13) |
C29 | 0.0438 (14) | 0.0376 (14) | 0.0369 (13) | −0.0035 (12) | 0.0012 (11) | −0.0002 (11) |
C28 | 0.0430 (15) | 0.0372 (15) | 0.0508 (15) | −0.0068 (12) | 0.0138 (12) | −0.0104 (12) |
C31 | 0.0584 (17) | 0.0346 (14) | 0.0352 (13) | −0.0044 (12) | 0.0142 (12) | −0.0023 (11) |
C32 | 0.082 (2) | 0.0411 (17) | 0.0529 (18) | −0.0145 (17) | −0.0104 (16) | 0.0021 (14) |
C17 | 0.0343 (12) | 0.0332 (13) | 0.0272 (11) | 0.0007 (10) | 0.0049 (9) | 0.0007 (9) |
N3D—C2D | 1.457 (3) | C25—C26 | 1.514 (4) |
N3D—C29 | 1.460 (3) | C25—H25A | 0.9900 |
N3D—C31 | 1.466 (3) | C25—H25B | 0.9900 |
N3A—C2A | 1.460 (3) | C10—C4A | 1.507 (4) |
N3A—C11 | 1.462 (3) | C10—H10A | 0.9800 |
N3A—C13 | 1.471 (3) | C10—H10B | 0.9800 |
O1A—C1A | 1.233 (3) | C10—H10C | 0.9800 |
N2C—C1C | 1.347 (3) | C15—H15A | 0.9800 |
N2C—C3C | 1.429 (3) | C15—H15B | 0.9800 |
N2C—H2C | 0.890 (13) | C15—H15C | 0.9800 |
O1B—C1B | 1.228 (3) | C5A—C4A | 1.388 (3) |
O1D—C1D | 1.233 (3) | C5A—H5A | 0.9500 |
N2B—C1B | 1.345 (3) | C5C—C6C | 1.379 (4) |
N2B—C3B | 1.429 (3) | C5C—H5C | 0.9500 |
N2B—H2B | 0.891 (13) | C24—H24A | 0.9800 |
O1C—C1C | 1.225 (3) | C24—H24B | 0.9800 |
C4B—C5B | 1.393 (3) | C24—H24C | 0.9800 |
C4B—C3B | 1.398 (3) | C1C—C2C | 1.517 (3) |
C4B—C16 | 1.509 (3) | C4D—C5D | 1.395 (3) |
N3B—C2B | 1.459 (3) | C4D—C28 | 1.507 (4) |
N3B—C19 | 1.461 (3) | C6C—H6C | 0.9500 |
N3B—C17 | 1.463 (3) | C20—H20A | 0.9800 |
C2A—C1A | 1.523 (3) | C20—H20B | 0.9800 |
C2A—H2A1 | 0.9900 | C20—H20C | 0.9800 |
C2A—H2A2 | 0.9900 | C11—C12 | 1.508 (4) |
C2B—C1B | 1.519 (3) | C11—H11A | 0.9900 |
C2B—H2B1 | 0.9900 | C11—H11B | 0.9900 |
C2B—H2B2 | 0.9900 | C5D—C6D | 1.384 (4) |
C7B—C6B | 1.384 (4) | C5D—H5D | 0.9500 |
C7B—C8B | 1.399 (3) | C2D—H2D1 | 0.9900 |
C7B—H7B | 0.9500 | C2D—H2D2 | 0.9900 |
C4C—C5C | 1.396 (4) | C7A—H7A | 0.9500 |
C4C—C3C | 1.398 (3) | C6D—H6D | 0.9500 |
C4C—C22 | 1.507 (4) | C22—H22A | 0.9800 |
C7D—C6D | 1.382 (4) | C22—H22B | 0.9800 |
C7D—C8D | 1.397 (3) | C22—H22C | 0.9800 |
C7D—H7D | 0.9500 | C9—H9A | 0.9800 |
C8B—C3B | 1.396 (3) | C9—H9B | 0.9800 |
C8B—C15 | 1.499 (4) | C9—H9C | 0.9800 |
N2D—C1D | 1.334 (3) | C13—C14 | 1.521 (4) |
N2D—C3D | 1.430 (3) | C13—H13A | 0.9900 |
N2D—H2D | 0.886 (13) | C13—H13B | 0.9900 |
C8C—C3C | 1.395 (4) | C12—H12A | 0.9800 |
C8C—C7C | 1.394 (3) | C12—H12B | 0.9800 |
C8C—C21 | 1.506 (4) | C12—H12C | 0.9800 |
N3C—C2C | 1.454 (3) | C21—H21A | 0.9800 |
N3C—C23 | 1.458 (4) | C21—H21B | 0.9800 |
N3C—C25 | 1.464 (4) | C21—H21C | 0.9800 |
C16—H16A | 0.9800 | C26—H26A | 0.9800 |
C16—H16B | 0.9800 | C26—H26B | 0.9800 |
C16—H16C | 0.9800 | C26—H26C | 0.9800 |
C27—C8D | 1.504 (4) | C2C—H2C1 | 0.9900 |
C27—H27A | 0.9800 | C2C—H2C2 | 0.9900 |
C27—H27B | 0.9800 | C6B—H6B | 0.9500 |
C27—H27C | 0.9800 | C14—H14A | 0.9800 |
C5B—C6B | 1.380 (4) | C14—H14B | 0.9800 |
C5B—H5B | 0.9500 | C14—H14C | 0.9800 |
N2A—C1A | 1.339 (3) | C18—C17 | 1.526 (4) |
N2A—C3A | 1.433 (3) | C18—H18A | 0.9800 |
N2A—H2A | 0.885 (13) | C18—H18B | 0.9800 |
C3A—C4A | 1.397 (3) | C18—H18C | 0.9800 |
C3A—C8A | 1.399 (3) | C30—C29 | 1.514 (4) |
C7C—C6C | 1.386 (4) | C30—H30A | 0.9800 |
C7C—H7C | 0.9500 | C30—H30B | 0.9800 |
C3D—C4D | 1.395 (3) | C30—H30C | 0.9800 |
C3D—C8D | 1.398 (3) | C29—H29A | 0.9900 |
C19—C20 | 1.522 (4) | C29—H29B | 0.9900 |
C19—H19A | 0.9900 | C28—H28A | 0.9800 |
C19—H19B | 0.9900 | C28—H28B | 0.9800 |
C8A—C7A | 1.394 (3) | C28—H28C | 0.9800 |
C8A—C9 | 1.503 (4) | C31—C32 | 1.509 (4) |
C6A—C7A | 1.379 (4) | C31—H31A | 0.9900 |
C6A—C5A | 1.387 (4) | C31—H31B | 0.9900 |
C6A—H6A | 0.9500 | C32—H32A | 0.9800 |
C1D—C2D | 1.514 (3) | C32—H32B | 0.9800 |
C23—C24 | 1.513 (4) | C32—H32C | 0.9800 |
C23—H23A | 0.9900 | C17—H17A | 0.9900 |
C23—H23B | 0.9900 | C17—H17B | 0.9900 |
C2D—N3D—C29 | 111.65 (19) | C23—C24—H24A | 109.5 |
C2D—N3D—C31 | 112.9 (2) | C23—C24—H24B | 109.5 |
C29—N3D—C31 | 112.06 (19) | H24A—C24—H24B | 109.5 |
C2A—N3A—C11 | 113.4 (2) | C23—C24—H24C | 109.5 |
C2A—N3A—C13 | 111.88 (19) | H24A—C24—H24C | 109.5 |
C11—N3A—C13 | 114.2 (2) | H24B—C24—H24C | 109.5 |
C1C—N2C—C3C | 124.40 (19) | O1C—C1C—N2C | 124.2 (2) |
C1C—N2C—H2C | 115.4 (17) | O1C—C1C—C2C | 121.1 (2) |
C3C—N2C—H2C | 120.2 (17) | N2C—C1C—C2C | 114.63 (19) |
C1B—N2B—C3B | 123.72 (19) | C5D—C4D—C3D | 117.8 (2) |
C1B—N2B—H2B | 116.0 (17) | C5D—C4D—C28 | 121.5 (2) |
C3B—N2B—H2B | 119.7 (17) | C3D—C4D—C28 | 120.7 (2) |
C5B—C4B—C3B | 118.4 (2) | C5C—C6C—C7C | 120.0 (2) |
C5B—C4B—C16 | 120.9 (2) | C5C—C6C—H6C | 120.0 |
C3B—C4B—C16 | 120.7 (2) | C7C—C6C—H6C | 120.0 |
C2B—N3B—C19 | 113.65 (17) | C19—C20—H20A | 109.5 |
C2B—N3B—C17 | 112.05 (19) | C19—C20—H20B | 109.5 |
C19—N3B—C17 | 115.08 (18) | H20A—C20—H20B | 109.5 |
N3A—C2A—C1A | 113.36 (19) | C19—C20—H20C | 109.5 |
N3A—C2A—H2A1 | 108.9 | H20A—C20—H20C | 109.5 |
C1A—C2A—H2A1 | 108.9 | H20B—C20—H20C | 109.5 |
N3A—C2A—H2A2 | 108.9 | N3A—C11—C12 | 111.5 (2) |
C1A—C2A—H2A2 | 108.9 | N3A—C11—H11A | 109.3 |
H2A1—C2A—H2A2 | 107.7 | C12—C11—H11A | 109.3 |
N3B—C2B—C1B | 113.25 (17) | N3A—C11—H11B | 109.3 |
N3B—C2B—H2B1 | 108.9 | C12—C11—H11B | 109.3 |
C1B—C2B—H2B1 | 108.9 | H11A—C11—H11B | 108.0 |
N3B—C2B—H2B2 | 108.9 | C6D—C5D—C4D | 121.1 (2) |
C1B—C2B—H2B2 | 108.9 | C6D—C5D—H5D | 119.5 |
H2B1—C2B—H2B2 | 107.7 | C4D—C5D—H5D | 119.5 |
C6B—C7B—C8B | 120.6 (2) | N3D—C2D—C1D | 113.76 (19) |
C6B—C7B—H7B | 119.7 | N3D—C2D—H2D1 | 108.8 |
C8B—C7B—H7B | 119.7 | C1D—C2D—H2D1 | 108.8 |
C5C—C4C—C3C | 117.7 (2) | N3D—C2D—H2D2 | 108.8 |
C5C—C4C—C22 | 121.4 (2) | C1D—C2D—H2D2 | 108.8 |
C3C—C4C—C22 | 120.8 (2) | H2D1—C2D—H2D2 | 107.7 |
O1B—C1B—N2B | 124.3 (2) | C5A—C4A—C3A | 118.3 (2) |
O1B—C1B—C2B | 121.48 (19) | C5A—C4A—C10 | 121.3 (2) |
N2B—C1B—C2B | 114.16 (19) | C3A—C4A—C10 | 120.4 (2) |
C6D—C7D—C8D | 120.8 (2) | C6A—C7A—C8A | 121.2 (2) |
C6D—C7D—H7D | 119.6 | C6A—C7A—H7A | 119.4 |
C8D—C7D—H7D | 119.6 | C8A—C7A—H7A | 119.4 |
C3B—C8B—C7B | 117.8 (2) | C7D—C6D—C5D | 120.1 (2) |
C3B—C8B—C15 | 121.1 (2) | C7D—C6D—H6D | 119.9 |
C7B—C8B—C15 | 121.1 (2) | C5D—C6D—H6D | 119.9 |
C1D—N2D—C3D | 122.87 (19) | C4C—C22—H22A | 109.5 |
C1D—N2D—H2D | 116.2 (17) | C4C—C22—H22B | 109.5 |
C3D—N2D—H2D | 120.9 (17) | H22A—C22—H22B | 109.5 |
C3C—C8C—C7C | 118.2 (2) | C4C—C22—H22C | 109.5 |
C3C—C8C—C21 | 120.5 (2) | H22A—C22—H22C | 109.5 |
C7C—C8C—C21 | 121.3 (2) | H22B—C22—H22C | 109.5 |
C2C—N3C—C23 | 112.8 (2) | C8A—C9—H9A | 109.5 |
C2C—N3C—C25 | 113.1 (2) | C8A—C9—H9B | 109.5 |
C23—N3C—C25 | 113.6 (2) | H9A—C9—H9B | 109.5 |
C4B—C16—H16A | 109.5 | C8A—C9—H9C | 109.5 |
C4B—C16—H16B | 109.5 | H9A—C9—H9C | 109.5 |
H16A—C16—H16B | 109.5 | H9B—C9—H9C | 109.5 |
C4B—C16—H16C | 109.5 | N3A—C13—C14 | 112.0 (2) |
H16A—C16—H16C | 109.5 | N3A—C13—H13A | 109.2 |
H16B—C16—H16C | 109.5 | C14—C13—H13A | 109.2 |
C8D—C27—H27A | 109.5 | N3A—C13—H13B | 109.2 |
C8D—C27—H27B | 109.5 | C14—C13—H13B | 109.2 |
H27A—C27—H27B | 109.5 | H13A—C13—H13B | 107.9 |
C8D—C27—H27C | 109.5 | C11—C12—H12A | 109.5 |
H27A—C27—H27C | 109.5 | C11—C12—H12B | 109.5 |
H27B—C27—H27C | 109.5 | H12A—C12—H12B | 109.5 |
C6B—C5B—C4B | 120.4 (2) | C11—C12—H12C | 109.5 |
C6B—C5B—H5B | 119.8 | H12A—C12—H12C | 109.5 |
C4B—C5B—H5B | 119.8 | H12B—C12—H12C | 109.5 |
C1A—N2A—C3A | 123.72 (19) | C8C—C21—H21A | 109.5 |
C1A—N2A—H2A | 117.5 (18) | C8C—C21—H21B | 109.5 |
C3A—N2A—H2A | 118.5 (18) | H21A—C21—H21B | 109.5 |
C8B—C3B—C4B | 122.1 (2) | C8C—C21—H21C | 109.5 |
C8B—C3B—N2B | 120.1 (2) | H21A—C21—H21C | 109.5 |
C4B—C3B—N2B | 117.8 (2) | H21B—C21—H21C | 109.5 |
C4A—C3A—C8A | 121.8 (2) | C25—C26—H26A | 109.5 |
C4A—C3A—N2A | 118.4 (2) | C25—C26—H26B | 109.5 |
C8A—C3A—N2A | 119.7 (2) | H26A—C26—H26B | 109.5 |
O1A—C1A—N2A | 124.2 (2) | C25—C26—H26C | 109.5 |
O1A—C1A—C2A | 120.8 (2) | H26A—C26—H26C | 109.5 |
N2A—C1A—C2A | 115.03 (19) | H26B—C26—H26C | 109.5 |
C6C—C7C—C8C | 120.8 (2) | N3C—C2C—C1C | 114.2 (2) |
C6C—C7C—H7C | 119.6 | N3C—C2C—H2C1 | 108.7 |
C8C—C7C—H7C | 119.6 | C1C—C2C—H2C1 | 108.7 |
C4D—C3D—C8D | 122.3 (2) | N3C—C2C—H2C2 | 108.7 |
C4D—C3D—N2D | 119.5 (2) | C1C—C2C—H2C2 | 108.7 |
C8D—C3D—N2D | 118.2 (2) | H2C1—C2C—H2C2 | 107.6 |
C8C—C3C—C4C | 122.1 (2) | C5B—C6B—C7B | 120.7 (2) |
C8C—C3C—N2C | 118.1 (2) | C5B—C6B—H6B | 119.6 |
C4C—C3C—N2C | 119.7 (2) | C7B—C6B—H6B | 119.6 |
N3B—C19—C20 | 112.2 (2) | C13—C14—H14A | 109.5 |
N3B—C19—H19A | 109.2 | C13—C14—H14B | 109.5 |
C20—C19—H19A | 109.2 | H14A—C14—H14B | 109.5 |
N3B—C19—H19B | 109.2 | C13—C14—H14C | 109.5 |
C20—C19—H19B | 109.2 | H14A—C14—H14C | 109.5 |
H19A—C19—H19B | 107.9 | H14B—C14—H14C | 109.5 |
C7A—C8A—C3A | 117.9 (2) | C17—C18—H18A | 109.5 |
C7A—C8A—C9 | 121.6 (2) | C17—C18—H18B | 109.5 |
C3A—C8A—C9 | 120.5 (2) | H18A—C18—H18B | 109.5 |
C7A—C6A—C5A | 119.9 (2) | C17—C18—H18C | 109.5 |
C7A—C6A—H6A | 120.0 | H18A—C18—H18C | 109.5 |
C5A—C6A—H6A | 120.0 | H18B—C18—H18C | 109.5 |
O1D—C1D—N2D | 123.9 (2) | C29—C30—H30A | 109.5 |
O1D—C1D—C2D | 120.8 (2) | C29—C30—H30B | 109.5 |
N2D—C1D—C2D | 115.37 (19) | H30A—C30—H30B | 109.5 |
N3C—C23—C24 | 112.7 (2) | C29—C30—H30C | 109.5 |
N3C—C23—H23A | 109.1 | H30A—C30—H30C | 109.5 |
C24—C23—H23A | 109.1 | H30B—C30—H30C | 109.5 |
N3C—C23—H23B | 109.1 | N3D—C29—C30 | 112.6 (2) |
C24—C23—H23B | 109.1 | N3D—C29—H29A | 109.1 |
H23A—C23—H23B | 107.8 | C30—C29—H29A | 109.1 |
N3C—C25—C26 | 111.2 (2) | N3D—C29—H29B | 109.1 |
N3C—C25—H25A | 109.4 | C30—C29—H29B | 109.1 |
C26—C25—H25A | 109.4 | H29A—C29—H29B | 107.8 |
N3C—C25—H25B | 109.4 | C4D—C28—H28A | 109.5 |
C26—C25—H25B | 109.4 | C4D—C28—H28B | 109.5 |
H25A—C25—H25B | 108.0 | H28A—C28—H28B | 109.5 |
C4A—C10—H10A | 109.5 | C4D—C28—H28C | 109.5 |
C4A—C10—H10B | 109.5 | H28A—C28—H28C | 109.5 |
H10A—C10—H10B | 109.5 | H28B—C28—H28C | 109.5 |
C4A—C10—H10C | 109.5 | N3D—C31—C32 | 111.8 (2) |
H10A—C10—H10C | 109.5 | N3D—C31—H31A | 109.3 |
H10B—C10—H10C | 109.5 | C32—C31—H31A | 109.3 |
C8B—C15—H15A | 109.5 | N3D—C31—H31B | 109.3 |
C8B—C15—H15B | 109.5 | C32—C31—H31B | 109.3 |
H15A—C15—H15B | 109.5 | H31A—C31—H31B | 107.9 |
C8B—C15—H15C | 109.5 | C31—C32—H32A | 109.5 |
H15A—C15—H15C | 109.5 | C31—C32—H32B | 109.5 |
H15B—C15—H15C | 109.5 | H32A—C32—H32B | 109.5 |
C7D—C8D—C3D | 118.0 (2) | C31—C32—H32C | 109.5 |
C7D—C8D—C27 | 121.4 (2) | H32A—C32—H32C | 109.5 |
C3D—C8D—C27 | 120.6 (2) | H32B—C32—H32C | 109.5 |
C6A—C5A—C4A | 120.9 (2) | N3B—C17—C18 | 115.4 (2) |
C6A—C5A—H5A | 119.5 | N3B—C17—H17A | 108.4 |
C4A—C5A—H5A | 119.5 | C18—C17—H17A | 108.4 |
C6C—C5C—C4C | 121.3 (2) | N3B—C17—H17B | 108.4 |
C6C—C5C—H5C | 119.4 | C18—C17—H17B | 108.4 |
C4C—C5C—H5C | 119.4 | H17A—C17—H17B | 107.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
N2B—H2B···O1A | 0.89 (1) | 2.14 (2) | 2.866 (2) | 139 (2) |
N2B—H2B···N3B | 0.89 (1) | 2.18 (2) | 2.660 (3) | 113 (2) |
N2C—H2C···O1B | 0.89 (1) | 2.17 (2) | 2.899 (2) | 139 (2) |
N2C—H2C···N3C | 0.89 (1) | 2.22 (2) | 2.693 (3) | 113 (2) |
N2D—H2D···N3D | 0.89 (1) | 2.20 (2) | 2.679 (3) | 113 (2) |
N2D—H2D···O1C | 0.89 (1) | 2.17 (2) | 2.884 (2) | 137 (2) |
N2A—H2A···O1Di | 0.89 (1) | 2.14 (2) | 2.889 (3) | 142 (2) |
Symmetry code: (i) x+1, y, z+1. |
C8H12CuN4O9 | Dx = 1.960 Mg m−3 |
Mr = 371.77 | Mo Kα radiation, λ = 0.7107 Å |
Orthorhombic, Fdd2 | Cell parameters from 67132 reflections |
a = 11.6309 (1) Å | θ = 2.7–57.8° |
b = 30.2463 (2) Å | µ = 1.79 mm−1 |
c = 7.1641 (1) Å | T = 93 K |
V = 2520.27 (4) Å3 | Plate, green |
Z = 8 | 0.23 × 0.13 × 0.09 mm |
F(000) = 1512 |
SuperNova, Dual, Cu at zero, Atlas diffractometer | 8173 independent reflections |
Radiation source: SuperNova (Mo) X-ray Source | 8051 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.049 |
Detector resolution: 5.2474 pixels mm-1 | θmax = 55.7°, θmin = 2.7° |
Absorption correction: multi-scan CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.52 (release 06-11-2009 CrysAlis171 .NET) (compiled Nov 6 2009,16:24:50) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. | h = −16→16 |
Tmin = 0.836, Tmax = 1.053 | k = −26→26 |
124184 measured reflections | l = −70→70 |
Refinement on F | 280 parameters |
Least-squares matrix: full | 1 restraint |
R[F2 > 2σ(F2)] = 0.011 | w1 = 1/[s2(Fo)] |
wR(F2) = 0.009 | (Δ/σ)max < 0.001 |
S = 1.46 | Absolute structure: Flack x determined using 3714 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons and Flack (2004), Acta Cryst. A60, s61). |
8100 reflections | Absolute structure parameter: 0.0081 (13) |
C8H12CuN4O9 | V = 2520.27 (4) Å3 |
Mr = 371.77 | Z = 8 |
Orthorhombic, Fdd2 | Mo Kα radiation |
a = 11.6309 (1) Å | µ = 1.79 mm−1 |
b = 30.2463 (2) Å | T = 93 K |
c = 7.1641 (1) Å | 0.23 × 0.13 × 0.09 mm |
SuperNova, Dual, Cu at zero, Atlas diffractometer | 8173 independent reflections |
Absorption correction: multi-scan CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.52 (release 06-11-2009 CrysAlis171 .NET) (compiled Nov 6 2009,16:24:50) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. | 8051 reflections with I > 2σ(I) |
Tmin = 0.836, Tmax = 1.053 | Rint = 0.049 |
124184 measured reflections |
R[F2 > 2σ(F2)] = 0.011 | 280 parameters |
wR(F2) = 0.009 | 1 restraint |
S = 1.46 | Absolute structure: Flack x determined using 3714 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons and Flack (2004), Acta Cryst. A60, s61). |
8100 reflections | Absolute structure parameter: 0.0081 (13) |
x | y | z | Uiso*/Ueq | ||
Cu(1) | −0.25 | 0.25 | 0.582008 | 0.006 | |
O(2) | −0.34194 (2) | 0.050199 (7) | 0.84487 (5) | 0.01 | |
O(4) | −0.47011 (3) | 0.169760 (9) | 1.16968 (5) | 0.015 | |
O(6) | −0.26083 (2) | 0.185014 (7) | 0.606883 | 0.009 | |
O(1) | −0.08488 (2) | 0.242673 (8) | 0.59406 (7) | 0.016 | |
O(3) | −0.25 | 0.25 | 0.283159 | 0.023 | |
N(1) | −0.30143 (2) | 0.118762 (7) | 0.73411 (4) | 0.008 | |
N(3) | −0.40235 (2) | 0.110439 (7) | 1.01014 (4) | 0.009 | |
C(2) | −0.34808 (2) | 0.090915 (8) | 0.86237 (4) | 0.008 | |
C(4) | −0.41361 (2) | 0.156044 (8) | 1.03149 (5) | 0.009 | |
C(5) | −0.36214 (2) | 0.183258 (7) | 0.89664 (4) | 0.009 | |
C(6) | −0.307016 (18) | 0.164450 (7) | 0.74352 (4) | 0.007 | |
H(1) | −0.266989 | 0.103516 | 0.620962 | 0.034848* | |
H(3) | −0.436521 | 0.091646 | 1.113578 | 0.03154* | |
H(5) | −0.372908 | 0.218591 | 0.913802 | 0.031986* | |
H(11) | −0.048137 | 0.216611 | 0.63786 | 0.020834* | |
H(12) | −0.033568 | 0.267092 | 0.590063 | 0.017721* | |
H(31) | −0.305311 | 0.264278 | 0.206432 | 0.031792* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu(1) | 0.006173 (16) | 0.006618 (14) | 0.00628 (2) | −0.000374 | 0 | 0 |
O(2) | 0.01008 (7) | 0.00760 (5) | 0.01268 (9) | 0.00050 (5) | 0.00285 (7) | 0.00122 (6) |
O(4) | 0.02120 (11) | 0.01213 (8) | 0.01033 (10) | 0.00619 (8) | 0.00889 (9) | 0.00292 (7) |
O(6) | 0.01095 (8) | 0.00777 (5) | 0.00863 (10) | −0.00082 (5) | 0.00379 (6) | 0.00069 (5) |
O(1) | 0.00719 (7) | 0.00920 (6) | 0.03045 (15) | −0.00034 (5) | −0.00206 (10) | 0.00203 (10) |
O(3) | 0.02721 (14) | 0.03636 (14) | 0.00642 (14) | 0.021911 | 0 | 0 |
N(1) | 0.00970 (7) | 0.00748 (5) | 0.00727 (8) | −0.00021 (5) | 0.00268 (6) | 0.00032 (5) |
N(3) | 0.01086 (7) | 0.00912 (6) | 0.00843 (8) | 0.00189 (5) | 0.00388 (6) | 0.00194 (6) |
C(2) | 0.00721 (7) | 0.00766 (6) | 0.00789 (9) | 0.00045 (5) | 0.00149 (6) | 0.00092 (5) |
C(4) | 0.01125 (8) | 0.00959 (7) | 0.00690 (9) | 0.00264 (6) | 0.00328 (7) | 0.00135 (6) |
C(5) | 0.01202 (8) | 0.00853 (6) | 0.00750 (8) | 0.00092 (5) | 0.00318 (6) | 0.00034 (5) |
C(6) | 0.00765 (6) | 0.00787 (6) | 0.00634 (8) | −0.00031 (5) | 0.00156 (6) | 0.00022 (5) |
O(2)—C(2) | 1.2399 (3) | N(1)—C(6) | 1.3851 (3) |
O(4)—C(4) | 1.2586 (4) | N(1)—H(1) | 1.0150 (3) |
O(6)—C(6) | 1.2782 (3) | N(3)—C(2) | 1.3667 (3) |
O(1)—H(11) | 0.9500 (3) | N(3)—C(4) | 1.3940 (3) |
O(1)—H(12) | 0.9500 (2) | N(3)—H(3) | 1.0150 (3) |
O(3)—H(31) | 0.9500 | C(4)—C(5) | 1.4033 (3) |
O(3)—H(31)i | 0.9500 | C(5)—C(6) | 1.3921 (3) |
N(1)—C(2) | 1.3595 (3) | C(5)—H(5) | 1.0830 (2) |
H(11)—O(1)—H(12) | 111.87 (3) | N(1)—C(2)—N(3) | 116.12 (2) |
H(31)—O(3)—H(31)i | 109.2945 | O(4)—C(4)—N(3) | 117.49 (3) |
C(2)—N(1)—C(6) | 124.51 (2) | O(4)—C(4)—C(5) | 124.81 (3) |
C(2)—N(1)—H(1) | 114.57 (2) | N(3)—C(4)—C(5) | 117.70 (2) |
C(6)—N(1)—H(1) | 120.71 (2) | C(4)—C(5)—C(6) | 119.95 (2) |
C(2)—N(3)—C(4) | 123.78 (2) | C(4)—C(5)—H(5) | 116.83 (2) |
C(2)—N(3)—H(3) | 120.29 (2) | C(6)—C(5)—H(5) | 123.09 (2) |
C(4)—N(3)—H(3) | 115.93 (2) | O(6)—C(6)—N(1) | 115.37 (2) |
O(2)—C(2)—N(1) | 121.60 (3) | O(6)—C(6)—C(5) | 126.74 (2) |
O(2)—C(2)—N(3) | 122.28 (2) | N(1)—C(6)—C(5) | 117.88 (2) |
Symmetry code: (i) −x−1/2, −y+1/2, z. |
Experimental details
(lid) | (xd_Cubar) | |
Crystal data | ||
Chemical formula | C14H22N2O | C8H12CuN4O9 |
Mr | 234.33 | 371.77 |
Crystal system, space group | Monoclinic, P21 | Orthorhombic, Fdd2 |
Temperature (K) | 112 | 93 |
a, b, c (Å) | 12.8666 (1), 13.6966 (1), 16.2049 (1) | 11.6309 (1), 30.2463 (2), 7.1641 (1) |
α, β, γ (°) | 90, 100.686 (1), 90 | 90, 90, 90 |
V (Å3) | 2806.24 (4) | 2520.27 (4) |
Z | 8 | 8 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.07 | 1.79 |
Crystal size (mm) | 0.40 × 0.25 × 0.15 | 0.23 × 0.13 × 0.09 |
Data collection | ||
Diffractometer | SuperNova, Dual, Cu at zero, Atlas diffractometer | SuperNova, Dual, Cu at zero, Atlas diffractometer |
Absorption correction | Multi-scan CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.52 (release 06-11-2009 CrysAlis171 .NET) (compiled Nov 6 2009,16:24:50) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. | Multi-scan CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.52 (release 06-11-2009 CrysAlis171 .NET) (compiled Nov 6 2009,16:24:50) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Tmin, Tmax | 0.845, 1.000 | 0.836, 1.053 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 32520, 16346, 12599 | 124184, 8173, 8051 |
Rint | 0.038 | 0.049 |
(sin θ/λ)max (Å−1) | 0.703 | 1.163 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.119, 1.06 | 0.011, 0.009, 1.46 |
No. of reflections | 16346 | 8100 |
No. of parameters | 641 | 280 |
No. of restraints | 5 | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | ? |
Δρmax, Δρmin (e Å−3) | 0.22, −0.21 | ?, ? |
Absolute structure | Flack x determined using 4986 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons and Flack (2004), Acta Cryst. A60, s61). | Flack x determined using 3714 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons and Flack (2004), Acta Cryst. A60, s61). |
Absolute structure parameter | 0.4 (3) | 0.0081 (13) |
Computer programs: CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.52 (release 06-11-2009 CrysAlis171 .NET) (compiled Nov 6 2009,16:24:50), SIR97 (ALTOMARE et al., 1999), SHELXL2013 (Sheldrick, 2013), Volkov et al., (2006), ORTEP-3 (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
N2B—H2B···O1A | 0.89 (1) | 2.14 (2) | 2.866 (2) | 139 (2) |
N2B—H2B···N3B | 0.89 (1) | 2.18 (2) | 2.660 (3) | 113 (2) |
N2C—H2C···O1B | 0.89 (1) | 2.17 (2) | 2.899 (2) | 139 (2) |
N2C—H2C···N3C | 0.89 (1) | 2.22 (2) | 2.693 (3) | 113 (2) |
N2D—H2D···N3D | 0.89 (1) | 2.20 (2) | 2.679 (3) | 113 (2) |
N2D—H2D···O1C | 0.89 (1) | 2.17 (2) | 2.884 (2) | 137 (2) |
N2A—H2A···O1Di | 0.89 (1) | 2.14 (2) | 2.889 (3) | 142 (2) |
Symmetry code: (i) x+1, y, z+1. |
O(2)—C(2) | 1.2399 (3) | N(1)—C(6) | 1.3851 (3) |
O(4)—C(4) | 1.2586 (4) | N(1)—H(1) | 1.0150 (3) |
O(6)—C(6) | 1.2782 (3) | N(3)—C(2) | 1.3667 (3) |
O(1)—H(11) | 0.9500 (3) | N(3)—C(4) | 1.3940 (3) |
O(1)—H(12) | 0.9500 (2) | N(3)—H(3) | 1.0150 (3) |
O(3)—H(31) | 0.9500 | C(4)—C(5) | 1.4033 (3) |
O(3)—H(31)i | 0.9500 | C(5)—C(6) | 1.3921 (3) |
N(1)—C(2) | 1.3595 (3) | C(5)—H(5) | 1.0830 (2) |
H(11)—O(1)—H(12) | 111.87 (3) | N(1)—C(2)—N(3) | 116.12 (2) |
H(31)—O(3)—H(31)i | 109.2945 | O(4)—C(4)—N(3) | 117.49 (3) |
C(2)—N(1)—C(6) | 124.51 (2) | O(4)—C(4)—C(5) | 124.81 (3) |
C(2)—N(1)—H(1) | 114.57 (2) | N(3)—C(4)—C(5) | 117.70 (2) |
C(6)—N(1)—H(1) | 120.71 (2) | C(4)—C(5)—C(6) | 119.95 (2) |
C(2)—N(3)—C(4) | 123.78 (2) | C(4)—C(5)—H(5) | 116.83 (2) |
C(2)—N(3)—H(3) | 120.29 (2) | C(6)—C(5)—H(5) | 123.09 (2) |
C(4)—N(3)—H(3) | 115.93 (2) | O(6)—C(6)—N(1) | 115.37 (2) |
O(2)—C(2)—N(1) | 121.60 (3) | O(6)—C(6)—C(5) | 126.74 (2) |
O(2)—C(2)—N(3) | 122.28 (2) | N(1)—C(6)—C(5) | 117.88 (2) |
Symmetry code: (i) −x−1/2, −y+1/2, z. |
Acknowledgements
The research was carried out with the equipment purchased thanks to the financial support of the European Regional Development Fund in the framework of the Polish Innovation Economy Operational Program (contract No. POIG.02.01.00-12-023/08). This research was supported in part by PL-Grid Infrastructure. Many thanks to Agilent, in particular Dr Fraser White, for providing the X-ray dataset for Cubar and Professor Katarzyna Stadnicka and Arkadiusz Gryl for fruitful discussions.
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