research papers
An unusual case of OD-allotwinning: 9,9′-(2,5-dibromo-1,4-phenylene)bis[9H-carbazole]
aInstitute of Applied Synthetic Chemistry, TU Wien, Vienna, Austria, and bInstitute of Chemical Technologies and Analytics, TU Wien, Vienna, Austria
*Correspondence e-mail: bstoeger@mail.tuwien.ac.at
9,9′-(2,5-Dibromo-1,4-phenylene)bis[9H-carbazole] (1) crystallizes as a category I order–disorder (OD) structure composed of non-polar layers of one kind with B2/m(1)1 layer symmetry. The crystals are made up of the two with a maximum degree of order (MDO). The monoclinic MDO1 polytype (B21/d) possesses an orthorhombic B-centered lattice and appears in two orientations, which are related by reflection at (100). The orthorhombic MDO2 polytype (F2dd) has a doubled b-axis and appears in two orientations, which are related by inversion. The crystal structures of both were determined in a concurrent The MDO1:MDO2 ratio is 69:31.
Keywords: twinning; allotwinning; order–disorder polytypism.
1. Introduction
A twin is a heterogeneous edifice made up of homogeneous crystals of the same phase in different orientations related by an operation that does not belong to the ). The crystalline domains diffract independently and the orientation relationship is well defined (Hahn & Klapper, 2006). Allotwinning (Nespolo et al., 1999) is a generalization of where the domains are different of the same compound (Greek = different) composed of equivalent layers. In contrast to the structural characterization of classical twins, the concurrent of two or more structural models against the same data set is not yet routine. It has nevertheless been performed successfully in a few cases (e.g. Friese et al., 2003; Krüger et al., 2009; Jahangiri et al., 2013; Stöger et al., 2015).
of the individual (Friedel, 1904The importance of applying such 3; Hans et al., 2015). Therein, we argued that not only the frequency of allotwinning, but also the of the minor domain in allotwins tend to be significantly underestimated.
strategies was shown in recent work by our group on the allotwinning of potassium silver carbonate (KAgCOIn a continuation of this work, we present an unusual case of allotwinning, which we serendipitously discovered during routine structural analysis of organic intermediates. 9,9′-(2,5-Dibromo-1,4-phenylene)bis[9H-carbazole] (1) was synthesized as an intermediate for further functionalization towards functional organic materials for potential applications in organic electronics (Fig. 1). The two bromine substituents allow for chemical modification via Pd catalyzed cross-coupling reactions. Crystals of (1) turned out to be allotwins made up of two members of an order–disorder (OD) polytype family (Dornberger-Schiff & Grell-Niemann, 1961). They can, therefore, be designated as OD-allotwins in analogy to OD-twins, which are made up of different orientations of the same OD-polytype. A non-OD would be composed of that do not follow the principles of OD theory.
To encourage future structural characterization of allotwins, a detailed account of data treatment and 3, to highlight the diversity of the phenomenon.
will be given. Furthermore, an interpretation according to the OD theory is presented, to plausibly explain the of the compound. Finally, the crystals of (1) are compared with those of KAgCO2. Experimental
2.1. Synthesis and crystal growth
Compound (1) was synthesized by twofold nucleophilic aromatic substitution starting from 1,4-dibromo-2,5-difluorobenzene and 9H-carbazole. A round-bottom flask was charged with 1,4-dibromo-2,5-difluorobenzene (1.09 g, 4.00 mmol, 1.0 eq.), 9H-carbazole (1.34 g, 8.00 mmol, 2.0 eq.), Cs2CO3 (2.87 g, 8.80 mmol, 2.2 eq.) and DMSO (25 ml). The reaction mixture was heated to 393 K for 48 h. After cooling to room temperature the reaction mixture was poured on water (450 ml) and the resulting suspension was filtered. The residue was washed with water and dried under reduced pressure. Purification was accomplished by crystallization from toluene yielding (1) (0.90 g, 1.59 mmol, 40%) as tiny plates, which were used for single-crystal diffraction.
1H NMR (400 MHz, CD2Cl2): δ = 8.20 (d, J = 7.7 Hz, 4H), 8.05 (s, 2H), 7.51 (dd, J = 8.2, 7.0 Hz, 4H), 7.37 (dd, J = 7.6, 7.4 Hz, 4H), 7.28 (d, J = 8.2 Hz, 4H) p.p.m. 13C NMR (100 MHz, CD2Cl2): δ = 141.1, 138.8, 136.6, 126.8, 124.1, 123.8, 121.2, 121.1, 110.6 p.p.m. NMR spectra were recorded on a Bruker Avance DRX-400 spectrometer.
2.2. Data collection
Crystals were selected under a polarizing microscope, embedded in perfluorinated oil and attached to Kapton® micromounts. They were subjected to short scans at 100 K in a dry stream of nitrogen on a Bruker KAPPA APEX II CCD diffractometer system (Bruker, 2014) using graphite-monochromated Mo Kα radiation. All crystals featured weak diffraction, with a sharp intensity drop off at higher diffraction angles and distinct streaking. A full data set up to 2θ = 55° of the crystal giving the best diffraction pattern was collected with long exposure. A 0.7 mm collimator ensured a full immersion of the platy (0.36 × 0.24 × 0.02 mm) crystal in the X-ray beam. Data were integrated using SAINT-Plus (Bruker, 2014). An adequate correction for absorption effects was performed by using the multi-scan approach implemented in SADABS (Bruker, 2014).
After a first successful
data of four more crystals were collected. Unfortunately, all of them featured even poorer reflection quality and were unfit for a proper structural characterization.2.3. Structure solution and refinement
The automatic unit-cell determination suggested an orthorhombic base-centered (oS) (Burzlaff & Zimmermann, 2006). In the conventional C-centered setting it had the cell parameters a ≃ 9.1 Å, b ≃ 14.5 Å, c ≃ 16.9 Å. The rather large Rint = 0.082 value for the mmm was attributed to the poor reflection quality. No structure solution was successful even in the lowest symmetry orthorhombic space groups. Likewise, attempts using any belonging to the monoclinic C-centered (2/mC) (Rint = 0.068) were unsuccessful. Thus, the lattice basis was transformed into the primitive setting , a ≃ 8.58 Å, b ≃ 16.9 Å, c ≃ 8.58 Å, β ≃ 116° (Fig. 2). Assuming a of the monoclinic primitive (2/mP) suggested the P21. Owing to streaking in the [010] direction, relying on absences is treacherous, because the streaks are interpreted by the integration software as positive Bragg intensity. A structure solution in P21 with the novel dual space method implemented in SHELXT (Sheldrick, 2015) did not converge to a usable result, as is common for the intensity data of twins. The implemented in SHELXS (Bruker, 2014), on the other hand, successfully located the Br atoms and most of the remainder of the molecule. Having succeeded in obtaining a preliminary structural model, no further attempts in triclinic space groups were undertaken.
Being aware of the orthorhombic metrics, the first refinements were performed under consideration of . In the oP setting it is parallel to ; in the oC setting parallel to (100). H atoms were placed at calculated positions and henceforth refined as riding on the parent C atoms. Visual inspection of the structure suggested the higher P21/n symmetry [the (1) molecule being located on a center of inversion], which was confirmed by the ADDSYM routine of PLATON (Spek, 2009; 100% fit). The correctness of the higher symmetry, which was used for subsequent refinements, was proven by reasonable anisotropic atomic displacement parameters (ADPs) of all non-H atoms, in contrast to the P21 model.
The twin plane is indicated in Fig. 2Nevertheless, the residuals were disappointing () and a prominent peak in the difference Fourier map (ρ = 7.68 e Å−3, charge = 2.36 e) was observed close to the carbazole moiety. The coordinates of this peak were approximately with respect to the coordinates (x,y,z) of the Br atom. Since Br is the only heavy atom in the structure, this suggested a spurious `phantom' or `shadow' molecule, which is characteristically observed for structures with improperly resolved stacking faults. The Br atom was refined as positionally disordered between the original position and the `phantom' (refined ratio ∼ 92:8), resulting in a significant drop of the residuals ().
In many, if not most, cases ). Indeed, the structure is built of such layers, which are pseudo-symmetric by reflection at with respect to the oP setting (the deviation from perfect symmetry is quantified in §3.4). The linear part of this reflection relates the orientation of the twin individuals. Application of this operation to an adjacent layer maps the positions of the Br and the phantom-Br in that layer.
is plausibly explained by pseudo-symmetry of distinct layers, called order–disorder (OD) layers (Grell, 1984The os, note the lower case Bravais letter), with the non-primitive basis (Fig. 2). To simplify the OD description, the basis was therefore transformed into the corresponding B-centered setting . In this setting the symbol of the is B21/d, because the intrinsic translation vector of the glide reflection is a quarter of the (010) face-diagonal of the The twin plane is parallel to (100). It has to be noted that the Hermann–Mauguin symbol B21/d is ambiguous with respect to the orientation of intrinsic translations. Here it designates the group with the d glide reflection with intrinsic translation vector , but not .
of the OD layers was rectangular base-centered (To explain the `shadow atoms', an interpretation according to OD theory (Dornberger-Schiff & Grell-Niemann, 1961) was performed (for details, see §3.2). The most probable minor polytype was determined to possess the orthorhombic F2dd symmetry with a doubled y-axis, i.e. the lattice basis . The corresponding reflections, albeit weak and diffuse, indeed exist and were missed by the automatic determination. Thus, data reduction and absorption correction were repeated with respect to the B-centered cell with the basis . The corresponding reciprocal basis defines the smallest in which the reflections of both can be indexed with integral hkl values (§3.5).
The occupational disorder of the Br atom was removed from the model of the B21/d polytype. A model of the F2dd polytype was generated from the model of the B21/d polytype by moving the origin to , halving the y-coordinates and applying the F2dd symmetry. This model featured a chemically implausibly bent dibromobenzene fragment. To achieve a reasonable model, the atoms of this fragment were all placed onto the x = 0 d glide plane (but not fixed there in subsequent refinements).
The models of both JANA2006 (Petříček et al., 2014) software. As previously, the B21/d model was refined with two orientations related by reflection at (100). The F2dd model was refined as two orientations related by inversion. Thus, in total the intensity data was calculated as originating from four independently diffracting domains. The C atoms in the minor F2dd polytype were refined with isotropic ADPs. The refinements converged quickly to satisfying residuals (Robs = 0.059).
were then combined and refined against the same data set using theIn diffraction patterns of crystals with a high ). In the crystal under investigation, reflections hkl with h = 2n, (or equivalently l = 2n) are distinctly elongated and located on rods of diffuse scattering (§3.5). To at least partially counteract this effect, for reflections h = 2n and h = 2n+1 different scale factors were used. Although the refined volume ratios changed only within the estimated (e.s.u.) range, the residuals improved distinctly (Robs = 0.055). Moreover, the highest peaks in the difference Fourier maps of both were less pronounced (B21/d: versus 1.47 e Å−3, charge = 1.40 versus 0.90 e; F2dd: 2.16 versus 1.76 e Å−3, charge = 0.05 versus 0.04 e). More details on data collection and are compiled in Tables 1 and 2.
probability, a systematic misevaluation of intensities owing to different shape and backgrounds of different reflection classes may occur. It can lead to erroneous volume fractions of the (Ďurovič effect; Nespolo & Ferraris, 2001
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‡Fractions of the whole edifice. |
3. Results and discussion
3.1. Molecular structure
Molecules of (1) (Fig. 3) in both possess 2/m pseudo-symmetry (actual symmetry and 2, respectively). The carbazole moieties are virtually planar [maximum distance to least-squares (LS) plane in the major B21/d polytype: 0.045 (7) Å (N1)]. Remarkably, the C—N bond connecting the benzene and the carbazole is distinctly tilted with respect to the plane of the carbazole [angle of N(carbazole)—C(benzene) to the LS plane of carbazole: 15.5 (4)°].
3.2. OD description
The crystal under investigation was made up of two ), each in two orientation states. The layers of the extend in the (010) plane [here and in the following discussion all directions are given with respect to the oB setting of §2.3], and will be designated as An, where n is a sequential number. The benzene rings are located at the center of these layers, the carbazoles at the interfaces.
(Fig. 4An OD interpretation of λ-partial operations (POs) (Dornberger-Schiff & Grell-Niemann, 1961). They are partial operations, because their domain of definition is a strict subset of Euclidean space E3. The operations relating different layers are likewise POs and are called σ-POs.
is based on identifying pseudo-symmetry of these layers. The operations of these layers are calledIndeed, molecules (1) possess 2/m pseudo-symmetry with the twofold axis and the reflection plane in the [100] direction. By assuming perfect 2/m symmetry of the molecules, the An layers (Fig. 5) possess B2/m(1)1 layer symmetry [in the tradition of OD literature parentheses are used to mark the direction lacking translational symmetry (Dornberger-Schiff & Grell-Niemann, 1961)]. Adjacent layers are related by a d glide reflection at a plane parallel to (010).
Because the reflection planes of adjacent layers do not overlap, the structure belongs to an OD family of layers of one kind. Since the layers are non-polar with respect to the stacking direction, the OD family belongs to category I (Dornberger-Schiff & Grell-Niemann, 1961). The OD family symbol reads in the oB setting as
according to the notation of Dornberger-Schiff & Grell-Niemann (1961). The first line of the symbol indicates the B2/m(1)1 layer symmetry of the An layers, the λ-POs. Below are listed the operations relating An to An+1 in one possible arrangement (σ-POs).
22 is a generalization of the 21 notation and describes a screw rotation with an intrinsic translation vector , which is the vector perpendicular to the layer planes and the length of one layer width. In analogy, nr,s is a glide reflection with the intrinsic translation vector etc.
In the actual OD family of the title compound, the metric parameters describing the intrinsic translations of the σ-POs are . This can be written by the symbol
Here, the nr,s glide reflection becomes a glide reflection, which is a d glide reflection with an intrinsic translation vector , corresponding to a quarter of the face diagonal of the Application of the B centering produces a second operation which is likewise a d glide reflection. On the other hand, no d glide reflections or exist in this case.
The alternative stacking possibilities are determined by application of the NFZ relationship (Ďurovič, 1997). To choose the correct form of the NFZ relationship, it is crucial to realise that the PO has reverse continuations (Dornberger-Schiff & Grell-Niemann, 1961), meaning that it maps An onto An+1, but also An+1 onto An. In other words, is a symmetry operations of the (An,An+1) pairs of layers.
In such a case the NFZ relationship reads as , where is the group of those operations of the An layer that do not reverse the orientation with respect to the stacking direction (λ-τ-POs in the OD literature). is the of those operations that are also valid for An+1. Thus, given a fixed An layer, the An+1 layer can appear in [Bm(1)1:B1 (1)1] = 2 positions, which are related by the m[100] operation of the An layer. In the alternative stacking possibility, the and glide reflections are realised.
By these stacking rules, the An layers can be arranged to an infinity of different which are all locally equivalent up to at least two layer widths. Of these, two are of a maximum degree of order (MDO), i.e. they cannot be decomposed into simpler (Dornberger-Schiff, 1982). MDO1 (B121/d, , Fig. 6a) is generated by repeated application of glide reflections; MDO2 (F2dd, , Fig. 6b) by alternating application of and glide reflections. All other consist of fragments of the MDO1 and MDO2.
make up the crystal under investigation. Indeed, experience shows that in the vast majority of observed cases, OD are of the MDO type. Identification of the MDO is therefore a crucial part of the interpretation of OD structures (Ďurovič, 19973.3. and allotwinning
To determine the possible orientation states that each polytype can adopt, the ), which is the generated by the linear parts of all POs of a member, is determined. In the title compound it is mmm. The of any member of the family is a of this point group.
of the OD family (Fichtner, 1977The possible orientation states of a polytype are then determined by the B21/d MDO1 polytype [mmm:2/m] = 2 and there are therefore two orientation states. The decomposition is and { 2[100],m[100],2[001],m[001]}. The latter is the (Hahn & Klapper, 2006) relating the two orientations.
decomposition of the of the member in the of the family. For theIn analogy, for the F2dd MDO2 polytype [mmm:2mm] = 2 and there are again two orientation states described by the cosets { 1,2[100],m[010],m[001]} and . This is by inversion and therefore determination of the twin volume ratio was only possible owing to the resonant scatterer Br.
3.4. Desymmetrization
As is characteristic for ordered ) compared with the idealized OD description (the prototype layers). A too extreme casts doubt on an OD interpretation, because it means that the presumption of geometrically, and therefore energetically, equivalent layers is not valid.
the actual layers in both MDO are desymmetrized (Ďurovič, 1979In the MDO1 polytype, the symmetry of the An layers is related to the prototype layers by a translationengleiche symmetry reduction of index 2 from B2/m(1)1 to . The of the (1) molecules is reduced from 2/m to . Of the σ-POs relating adjacent layers only the glide reflections and the 22 screw rotations are retained as symmetry operations of the whole polytype.
In the MDO2 polytype, the symmetry of the An layers is related to the prototype layers by a translationengleiche symmetry reduction of index 2 from B2/m(1)1 to B2 (1)1. The symmetry of molecules (1) is 2. Of the σ-POs relating adjacent layers, the and the glide reflections are retained (the latter is likewise written as d in the F2dd symbol owing to the doubled b-axis).
To quantify the An layer (in the MDO1 polytype the m[100] reflection; in the MDO2 polytype the inversion). An overlap of the actual An layers and their images are given in Fig. 7. The distance of the atoms mapped by pseudo-symmetry are compiled in Table 3.
in both the lost symmetry was applied to an actual
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The most striking difference in the 1: 0.435 Å, MDO2: 0.010 Å). In MDO1 the large deviation is due to a distinct inclination of the central dibromobenzene fragment of (1) with respect to the m[100] pseudo-reflection plane. In MDO2 on the other hand, the Br atom is located virtually on the pseudo-reflection plane (a d glide plane in the actual polytype) for chemical reasons. An inclination with respect to the reflection plane would result in a bent benzene ring, owing to the twofold rotation axis normal to the plane. The benzene rings are indeed apparently bent, though it has to be noted that the localization of the atoms in the MDO2 polytype is not exact owing to poor diffraction data (§3.5). The generally small deviations demonstrate the validity of the OD interpretation.
of both pertains to the Br atom (MDO3.5. Diffraction pattern
The et al., 2006). It plays a crucial role in the interpretation of the diffraction pattern of OD structures. The reflections of the (family reflections) are always sharp (supposing that plays only a minor role). All contribute equally (proportional to the volume ratio) to the family reflections. The remaining reflections are only generated by certain and are therefore called characteristic reflections. They can be sharp if the are highly ordered, but may also be broadened in the case of frequent stacking faults.
of an OD family is the fictitious structure in which all stacking possibilities of the family are realised (ĎurovičThe m[100] operation of the An layers onto the An+1 layers (Fig. 6c). The symmetry of the the superposition group (Fichtner, 1977), is Pmnn with lattice basis . The symmetry of any stacking arrangement, ordered or disordered, is a of the superposition group.
of the OD family under investigation is derived by application of theIn the reciprocal basis of the MDO1 polytype the family reflections are located at h = 2nh,k = nk,l = 2nl with . It can be shown (Ferraris et al., 2008; Hans et al., 2015) that if the layers are translationally equivalent, non-zero intensity on the rods with the family reflections is only observed for the family reflections, even for long-period and disordered stackings. Here, adjacent layers are not equivalent, but an analoguous result is obtained by decomposing the structure into A2n and A2n+1 layers. Thus, characteristic reflections and diffuse scattering are only expected on rods h = 2nh+1, l = 2nl+1. The characteristic reflections of both MDO are distinct. A summary of the is given in Table 4.
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Indeed, in the actual diffraction patterns family reflections are sharp (Fig. 8a), whereas the characteristic reflections (Fig. 8b) are located on distinct streaks, indicative of disordered domains. The characteristic reflections are elongated in the stacking direction, i.e. the ordered domains are small. The intensities of the MDO2 characteristic reflections are weak and in the same order of magnitude as the intensities of the streaks.
A careful inspection of the family reflections reveals that they are likewise located on distinct, albeit very faint, streaks of diffuse scattering. This is due to the layers in the structure not being translationally equivalent as a consequence of ). Notably, the strongly diffracting Br atoms alternate between two positions in the MDO1 polytype and adopt a third orientation in the MDO2 polytype, where they are located close to the idealized positions. It can therefore be expected that in the disordered parts of the crystals the Br atoms feature a distinct modulation of their position, resulting in faint streaks.
(§3.43.6. Determination of the volume ratio
The volume ratio of the four domains (MDO1:MDO1:MDO2:MDO2) was determined by a concurrent (§2.3) as 36.6 (2):32.4 (2):14.9 (13):16.1 (12). Thus, the MDO1:MDO2 ratio is 69.0:31.0. As expected for a crystal with a high probability, the volume fractions of the two orientations of each polytype are approximately equal. The ESU of the fractions of the MDO2 domains is significantly higher, because it is derived from the of the Br atoms.
The allo)twinning. In such a case the individual domains diffract independently and the intensities are calculated as the weighted sums of the intensities of the individuals. Given the signs of disorder and small ordered domains (§3.5), this assumption is only valid to a certain degree. Moreover, the intensities of the MDO2 characteristic reflections are in the order of magnitude of the intensities of the streaks and therefore the determined volume ratio has to be considered as inexact.
was performed under the assumption of ideal (For comparison, the polytype fractions were also indirectly determined by a 1 reflections. The twin which describes the ratio of both orientations of the MDO1 polytype, refined to 53.1:46.9 (2). Indeed, owing to the laws of probability, volume fractions in a polysynthetic twin with a high probability are expected to be close to equal. The Br position was refined as occupationally disordered (§2.3). As we have shown for KAgCO3 (Hans et al., 2015), the actual fraction of the major polytype is , where o is the occupancy of the major Br position, if two conditions hold: Firstly, the domains diffract independently and secondly the contributions of both to the family reflections are equal. As noted above, we cannot ascertain the former and also the latter is certainly not perfectly fulfilled owing to the strong of the Br position. Nevertheless, the refined occupancy ratio of the Br atoms is 92.25:7.75 (14), which corresponds to an MDO1:MDO2 ratio of 72.16:27.84. The similarity of the ratios derived from both refinements indicates that the assumption of independent diffraction is mostly valid.
using only the MDO3.7. Comparison to KAgCO3
In two instances the (1) allotwins differ notably from the KAgCO3 allotwins that we have described previously (Hans et al., 2015). Firstly, KAgCO3 featured a high degree of order and large domains, as witnessed by sharp reflections and an absence of diffuse scattering. Secondly, KAgCO3 featured virtually no and therefore contributions to the family reflections can be assumed to be equal for all These two points are seemingly paradoxical, because one would expect that distinct are stabilized by Hence, it is shown that crystallization is a complex dynamic process, which cannot be broken down to such simple rules.
4. Conclusion and outlook
The crystals of (1) are a further addition to the growing set of known allotwins and here it should be stressed again that the phenomenon is more common than one might expect. It is therefore crucial to recognize and pursue the, often subtle, signs of allotwinning like peaks in the difference Fourier maps and weak additional reflections. Moreover, we want to emphasize the diversity of the phenomenon, making it necessary to address every
as a unique problem.In a final, and longer, remark it is noted that the B21/d and F2dd symmetry.
of (1) is particularly unusual owing to the metric parameters . Only for this particular pair of parameters the MDO possessOD ] also belong the groupoids of fully ordered OD structures (i.e. with only one structure in the family). It therefore seems necessary to develop a finer classification system.
families, which are the only accepted symmetry-classification system of OD families, disregard these metric parameters, despite their fundamental importance. Indeed, to the OD family of (1) [equation (1)On the example of the OD An layer different (r,s) pairs describe the same OD family. Notably, the intrinsic translation of the nr,s glide reflection need only be considered modulo the rectangular centered (ob) lattice of the layers. Moreover, owing to the group of λ-τ-POs [Bm(1)1], if nr,s is a σ-PO in an alternative stacking arrangement nr,-s is also a σ-PO. Therefore, for a given An layer, the pairs (r,s) and (r,-s) describe the same family of structures. In total, for this OD family the intrinsic translation vectors of the nr,s glide reflection can be limited to the of the An layers. The corresponding metric parameters are , (Fig. 9). Note that in other OD families conjugation of σ-POs with λ-τ-POs may alter the linear part, leading to more complex situations.
family of (1), a short overview of the special values that the metric parameters can adopt will be developed. First, one has to realise that for a givenAs has been discussed above (§3.2), two factors determine the number Z of stacking possibilities. Firstly, whether the m[100] glide planes of adjacent layers overlap. This is generally the case for . With the restrictions on (r,s) above, the cases s = 0, remain (Fig. 9). The second criterion is whether there exists a reverse continuation. The nr,s σ-PO in the [010] direction is a reverse continuation if , , (i.e. r and s are integral multiples of and r+s is an integer). With the restrictions on (r,s) above there are three (r,s) pairs to consider, viz. (0,0), (1,0), . The 2r σ-PO is a reverse continuation if . With the restrictions above, these cases are r = 0, and r = 1, . These three sets and their intersections are summarized in Table 5. There are three values that Z can adopt: 1 (the structure is fully ordered), 2 and 4. The fundamental importance of these sets of parameters is demonstrated by the symmetry of the MDO (rightmost column in Table 5).
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More complexities arise when considering the symmetry of the
Here, one has to differentiate between rational and irrational metric parameters. If irrational, the lattice of the may become dense in one or two directions.Certainly, devising a proper definition of the different classes of metric parameters and their tabulation will be a difficult task. Nevertheless, given the frequent occurrence of OD structures, it is overdue.
Supporting information
https://doi.org/10.1107/S2052520616018291/wf5130sup1.cif
contains datablocks mon, orth. DOI:Structure factors: contains datablock mon. DOI: https://doi.org/10.1107/S2052520616018291/wf5130monsup2.hkl
Structure factors: contains datablock orth. DOI: https://doi.org/10.1107/S2052520616018291/wf5130orthsup3.hkl
C30H18Br2N2 | F(000) = 1128 |
Mr = 566.3 | Dx = 1.687 Mg m−3 |
Monoclinic, B21/d | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -B 2ydav | Cell parameters from 2.4 reflections |
a = 14.5394 (13) Å | θ = 27.7–2066° |
b = 16.8717 (14) Å | µ = 3.66 mm−1 |
c = 9.0877 (8) Å | T = 100 K |
β = 90° | Plate, translucent yellow |
V = 2229.3 (3) Å3 | 0.36 × 0.24 × 0.02 mm |
Z = 4 |
Bruker KAPPA APEX II CCD diffractometer | 4385 independent reflections |
Radiation source: X-ray tube | 3676 reflections with I > 3σ(I) |
Graphite monochromator | Rint = 0.042 |
ω– and φ–scans | θmax = 27.9°, θmin = 2.4° |
Absorption correction: multi-scan SADABS | h = −19→19 |
Tmin = 0.36, Tmax = 0.93 | k = −44→37 |
7563 measured reflections | l = −9→11 |
Refinement on F | 73 constraints |
R[F2 > 2σ(F2)] = 0.055 | H-atom parameters constrained |
wR(F2) = 0.072 | Weighting scheme based on measured s.u.'s w = 1/(σ2(F) + 0.0001F2) |
S = 1.81 | (Δ/σ)max = 0.022 |
4385 reflections | Δρmax = 1.47 e Å−3 |
231 parameters | Δρmin = −0.63 e Å−3 |
0 restraints |
x | y | z | Uiso*/Ueq | ||
Br1_2 | 0.01495 (6) | 0.18998 (5) | 0.06308 (10) | 0.0255 (2) | |
N1_2 | 0.0021 (3) | 0.0556 (4) | 0.2935 (7) | 0.0123 (18) | |
C1_2 | 0.0005 (4) | 0.0274 (5) | 0.1455 (9) | 0.015 (2) | |
C2_2 | 0.0065 (5) | 0.0800 (5) | 0.0249 (9) | 0.020 (2) | |
C3_2 | 0.0045 (4) | 0.0524 (4) | −0.1140 (8) | 0.014 (2) | |
C4_2 | 0.0807 (4) | 0.0838 (4) | 0.3637 (8) | 0.013 (2) | |
C5_2 | 0.1714 (5) | 0.0732 (5) | 0.3246 (10) | 0.020 (2) | |
C6_2 | 0.2371 (5) | 0.1058 (5) | 0.4131 (11) | 0.022 (2) | |
C7_2 | 0.2131 (5) | 0.1511 (4) | 0.5353 (8) | 0.020 (2) | |
C8_2 | 0.1227 (5) | 0.1619 (4) | 0.5714 (9) | 0.016 (2) | |
C9_2 | 0.0538 (5) | 0.1280 (4) | 0.4858 (8) | 0.013 (2) | |
C10_2 | −0.0458 (5) | 0.1305 (4) | 0.4895 (8) | 0.012 (2) | |
C11_2 | −0.1118 (5) | 0.1654 (4) | 0.5796 (10) | 0.020 (2) | |
C12_2 | −0.2032 (5) | 0.1568 (4) | 0.5443 (9) | 0.021 (2) | |
C13_2 | −0.2296 (5) | 0.1110 (5) | 0.4248 (10) | 0.020 (2) | |
C14_2 | −0.1661 (5) | 0.0758 (4) | 0.3329 (9) | 0.017 (2) | |
C15_2 | −0.0743 (5) | 0.0853 (4) | 0.3682 (8) | 0.015 (2) | |
H1c3_2 | 0.006687 | 0.089609 | −0.193931 | 0.0165* | |
H1c5_2 | 0.187837 | 0.043799 | 0.238073 | 0.0235* | |
H1c6_2 | 0.300863 | 0.097346 | 0.390708 | 0.0266* | |
H1c7_2 | 0.260343 | 0.174862 | 0.594546 | 0.0241* | |
H1c8_2 | 0.106674 | 0.192937 | 0.656149 | 0.0193* | |
H1c11_2 | −0.093824 | 0.195045 | 0.665086 | 0.0245* | |
H1c12_2 | −0.249195 | 0.182771 | 0.602822 | 0.0252* | |
H1c13_2 | −0.293991 | 0.103586 | 0.405567 | 0.0246* | |
H1c14_2 | −0.184786 | 0.045983 | 0.248033 | 0.0205* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1_2 | 0.0362 (4) | 0.0112 (3) | 0.0290 (4) | −0.0005 (4) | −0.0037 (4) | −0.0016 (4) |
N1_2 | 0.010 (3) | 0.016 (3) | 0.011 (3) | −0.001 (2) | −0.001 (2) | −0.009 (2) |
C1_2 | 0.011 (3) | 0.018 (4) | 0.017 (4) | 0.002 (3) | −0.001 (3) | −0.003 (3) |
C2_2 | 0.020 (4) | 0.011 (4) | 0.030 (5) | 0.003 (3) | −0.007 (3) | −0.004 (3) |
C3_2 | 0.012 (4) | 0.017 (4) | 0.012 (4) | 0.000 (3) | −0.004 (3) | 0.003 (3) |
C4_2 | 0.011 (3) | 0.014 (4) | 0.014 (4) | 0.000 (3) | −0.004 (3) | 0.001 (3) |
C5_2 | 0.015 (3) | 0.025 (4) | 0.019 (4) | 0.004 (3) | −0.003 (3) | 0.000 (4) |
C6_2 | 0.005 (3) | 0.029 (5) | 0.033 (5) | 0.000 (3) | −0.005 (3) | 0.004 (3) |
C7_2 | 0.022 (4) | 0.021 (4) | 0.017 (4) | −0.007 (3) | −0.015 (3) | 0.002 (3) |
C8_2 | 0.025 (4) | 0.016 (4) | 0.007 (4) | −0.005 (3) | −0.001 (3) | −0.005 (3) |
C9_2 | 0.015 (3) | 0.010 (3) | 0.012 (4) | 0.002 (3) | −0.001 (3) | 0.001 (3) |
C10_2 | 0.015 (3) | 0.013 (4) | 0.008 (4) | 0.002 (3) | 0.002 (3) | 0.000 (3) |
C11_2 | 0.028 (4) | 0.013 (4) | 0.021 (4) | 0.002 (3) | 0.002 (3) | 0.000 (3) |
C12_2 | 0.021 (4) | 0.019 (4) | 0.023 (5) | 0.003 (3) | 0.017 (3) | 0.004 (3) |
C13_2 | 0.004 (3) | 0.032 (5) | 0.025 (5) | 0.004 (3) | 0.001 (4) | 0.007 (3) |
C14_2 | 0.014 (3) | 0.022 (4) | 0.016 (4) | −0.002 (3) | −0.002 (3) | −0.004 (3) |
C15_2 | 0.015 (3) | 0.011 (4) | 0.019 (4) | 0.001 (3) | 0.004 (3) | 0.002 (3) |
Br1_2—N1_2 | 3.092 (7) | C7_2—C8_2 | 1.367 (10) |
Br1_2—C2_2 | 1.891 (8) | C7_2—H1c7_2 | 0.96 |
N1_2—C1_2 | 1.427 (10) | C8_2—C9_2 | 1.392 (10) |
N1_2—C4_2 | 1.392 (9) | C8_2—H1c8_2 | 0.96 |
N1_2—C15_2 | 1.395 (9) | C9_2—C10_2 | 1.449 (9) |
C1_2—C2_2 | 1.413 (11) | C10_2—C11_2 | 1.392 (10) |
C1_2—C3_2i | 1.379 (11) | C10_2—C15_2 | 1.404 (10) |
C2_2—C3_2 | 1.346 (11) | C11_2—C12_2 | 1.375 (11) |
C3_2—H1c3_2 | 0.96 | C11_2—H1c11_2 | 0.96 |
C4_2—C5_2 | 1.378 (9) | C12_2—C13_2 | 1.386 (12) |
C4_2—C9_2 | 1.392 (10) | C12_2—H1c12_2 | 0.96 |
C5_2—C6_2 | 1.364 (12) | C13_2—C14_2 | 1.381 (11) |
C5_2—H1c5_2 | 0.96 | C13_2—H1c13_2 | 0.96 |
C6_2—C7_2 | 1.393 (12) | C14_2—C15_2 | 1.381 (10) |
C6_2—H1c6_2 | 0.96 | C14_2—H1c14_2 | 0.96 |
N1_2—Br1_2—C2_2 | 53.2 (3) | C6_2—C7_2—H1c7_2 | 119.84 |
Br1_2—N1_2—C1_2 | 66.8 (4) | C8_2—C7_2—H1c7_2 | 119.84 |
Br1_2—N1_2—C4_2 | 90.6 (4) | C7_2—C8_2—C9_2 | 120.2 (7) |
Br1_2—N1_2—C15_2 | 96.5 (4) | C7_2—C8_2—H1c8_2 | 119.89 |
C1_2—N1_2—C4_2 | 124.0 (5) | C9_2—C8_2—H1c8_2 | 119.89 |
C1_2—N1_2—C15_2 | 124.4 (6) | C4_2—C9_2—C8_2 | 117.6 (6) |
C4_2—N1_2—C15_2 | 107.9 (6) | C4_2—C9_2—C10_2 | 108.4 (6) |
N1_2—C1_2—C2_2 | 121.4 (7) | C8_2—C9_2—C10_2 | 133.9 (7) |
N1_2—C1_2—C3_2i | 121.4 (7) | C9_2—C10_2—C11_2 | 135.7 (7) |
C2_2—C1_2—C3_2i | 117.1 (7) | C9_2—C10_2—C15_2 | 105.1 (6) |
Br1_2—C2_2—C1_2 | 118.6 (6) | C11_2—C10_2—C15_2 | 119.2 (6) |
Br1_2—C2_2—C3_2 | 120.8 (6) | C10_2—C11_2—C12_2 | 119.0 (7) |
C1_2—C2_2—C3_2 | 120.6 (7) | C10_2—C11_2—H1c11_2 | 120.51 |
C1_2i—C3_2—C2_2 | 122.2 (7) | C12_2—C11_2—H1c11_2 | 120.51 |
C1_2i—C3_2—H1c3_2 | 118.89 | C11_2—C12_2—C13_2 | 120.6 (7) |
C2_2—C3_2—H1c3_2 | 118.89 | C11_2—C12_2—H1c12_2 | 119.68 |
N1_2—C4_2—C5_2 | 128.5 (7) | C13_2—C12_2—H1c12_2 | 119.68 |
N1_2—C4_2—C9_2 | 108.5 (6) | C12_2—C13_2—C14_2 | 121.9 (7) |
C5_2—C4_2—C9_2 | 122.9 (7) | C12_2—C13_2—H1c13_2 | 119.06 |
C4_2—C5_2—C6_2 | 117.8 (8) | C14_2—C13_2—H1c13_2 | 119.06 |
C4_2—C5_2—H1c5_2 | 121.11 | C13_2—C14_2—C15_2 | 117.1 (7) |
C6_2—C5_2—H1c5_2 | 121.11 | C13_2—C14_2—H1c14_2 | 121.44 |
C5_2—C6_2—C7_2 | 121.1 (7) | C15_2—C14_2—H1c14_2 | 121.44 |
C5_2—C6_2—H1c6_2 | 119.46 | N1_2—C15_2—C10_2 | 110.0 (6) |
C7_2—C6_2—H1c6_2 | 119.46 | N1_2—C15_2—C14_2 | 127.9 (7) |
C6_2—C7_2—C8_2 | 120.3 (7) | C10_2—C15_2—C14_2 | 122.1 (7) |
Symmetry code: (i) −x, −y, −z. |
C30H18Br2N2 | F(000) = 2256 |
Mr = 566.3 | Dx = 1.687 Mg m−3 |
Orthorhombic, F2dd | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: F 2x;-2yuvw;-2zuvw | Cell parameters from 2.4 reflections |
a = 14.5394 (13) Å | θ = 27.7–2066° |
b = 33.743 (3) Å | µ = 3.66 mm−1 |
c = 9.0877 (8) Å | T = 100 K |
V = 4458.5 (7) Å3 | Plate, translucent yellow |
Z = 8 | 0.36 × 0.24 × 0.02 mm |
Bruker KAPPA APEX II CCD diffractometer | 4385 independent reflections |
Radiation source: X-ray tube | 3676 reflections with I > 3σ(I) |
Graphite monochromator | Rint = 0.042 |
ω– and φ–scans | θmax = 27.9°, θmin = 2.4° |
Absorption correction: multi-scan SADABS | h = −19→19 |
Tmin = 0.36, Tmax = 0.93 | k = −44→37 |
7563 measured reflections | l = −9→11 |
Refinement on F | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.055 | Weighting scheme based on measured s.u.'s w = 1/(σ2(F) + 0.0001F2) |
wR(F2) = 0.072 | (Δ/σ)max = 0.022 |
S = 1.81 | Δρmax = 1.76 e Å−3 |
4385 reflections | Δρmin = −1.29 e Å−3 |
231 parameters | Absolute structure: 922 of Friedel pairs used in the refinement |
0 restraints | Absolute structure parameter: 0.161 (12) |
73 constraints |
x | y | z | Uiso*/Ueq | ||
Br1 | −0.00035 (8) | 0.09505 (4) | 0.06368 (13) | 0.0160 (3) | |
N1 | 0.0048 (6) | 0.0277 (3) | 0.2931 (11) | 0.0089 (19)* | |
C1 | 0.0060 (7) | 0.0140 (3) | 0.1452 (11) | 0.0039 (19)* | |
C2 | 0.0057 (7) | 0.0403 (3) | 0.0266 (10) | 0.006 (2)* | |
C3 | 0.0070 (7) | 0.0267 (3) | −0.1242 (12) | 0.004 (2)* | |
C4 | 0.0802 (7) | 0.0420 (3) | 0.3655 (12) | 0.006 (2)* | |
C5 | 0.1746 (7) | 0.0375 (3) | 0.3294 (13) | 0.010 (2)* | |
C6 | 0.2373 (8) | 0.0566 (4) | 0.4213 (13) | 0.005 (2)* | |
C7 | 0.2109 (8) | 0.0782 (4) | 0.5472 (13) | 0.012 (2)* | |
C8 | 0.1147 (8) | 0.0833 (4) | 0.5774 (13) | 0.011 (3)* | |
C9 | 0.0505 (7) | 0.0652 (3) | 0.4909 (12) | 0.006 (2)* | |
C10 | −0.0482 (7) | 0.0640 (3) | 0.4900 (12) | 0.006 (2)* | |
C11 | −0.1148 (8) | 0.0809 (4) | 0.5725 (13) | 0.012 (3)* | |
C12 | −0.2057 (8) | 0.0757 (4) | 0.5364 (13) | 0.014 (3)* | |
C13 | −0.2310 (8) | 0.0540 (4) | 0.4128 (14) | 0.011 (3)* | |
C14 | −0.1656 (7) | 0.0364 (3) | 0.3262 (13) | 0.008 (2)* | |
C15 | −0.0762 (7) | 0.0416 (3) | 0.3658 (12) | 0.005 (2)* | |
H1c3 | 0.008388 | 0.044907 | −0.205388 | 0.0049* | |
H1c5 | 0.194226 | 0.022189 | 0.246241 | 0.0121* | |
H1c6 | 0.301517 | 0.055043 | 0.397607 | 0.0056* | |
H1c7 | 0.256469 | 0.089251 | 0.611667 | 0.0143* | |
H1c8 | 0.095516 | 0.099533 | 0.658596 | 0.0132* | |
H1c11 | −0.098582 | 0.096537 | 0.656799 | 0.0148* | |
H1c12 | −0.252447 | 0.087182 | 0.597422 | 0.0169* | |
H1c13 | −0.294881 | 0.051307 | 0.387926 | 0.0134* | |
H1c14 | −0.182083 | 0.021106 | 0.24123 | 0.0099* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0357 (6) | 0.0069 (4) | 0.0055 (4) | −0.0015 (5) | 0.0029 (5) | −0.0007 (5) |
Br1—N1 | 3.084 (10) | C7—C8 | 1.436 (16) |
Br1—C2 | 1.880 (10) | C7—H1c7 | 0.96 |
N1—C1 | 1.422 (14) | C8—C9 | 1.365 (15) |
N1—C4 | 1.367 (14) | C8—H1c8 | 0.96 |
N1—C15 | 1.429 (14) | C9—C10 | 1.435 (14) |
C1—C2 | 1.395 (14) | C10—C11 | 1.351 (16) |
C1—C3i | 1.389 (14) | C10—C15 | 1.418 (15) |
C2—C3 | 1.445 (14) | C11—C12 | 1.372 (16) |
C3—H1c3 | 0.96 | C11—H1c11 | 0.96 |
C4—C5 | 1.419 (14) | C12—C13 | 1.390 (17) |
C4—C9 | 1.449 (15) | C12—H1c12 | 0.96 |
C5—C6 | 1.394 (16) | C13—C14 | 1.369 (16) |
C5—H1c5 | 0.96 | C13—H1c13 | 0.96 |
C6—C7 | 1.409 (17) | C14—C15 | 1.359 (14) |
C6—H1c6 | 0.96 | C14—H1c14 | 0.96 |
N1—Br1—C2 | 52.9 (3) | C6—C7—H1c7 | 120.57 |
Br1—N1—C1 | 66.4 (5) | C8—C7—H1c7 | 120.57 |
Br1—N1—C4 | 94.9 (6) | C7—C8—C9 | 120.2 (10) |
Br1—N1—C15 | 92.9 (6) | C7—C8—H1c8 | 119.92 |
C1—N1—C4 | 124.0 (9) | C9—C8—H1c8 | 119.92 |
C1—N1—C15 | 123.6 (9) | C4—C9—C8 | 119.4 (9) |
C4—N1—C15 | 108.9 (9) | C4—C9—C10 | 106.2 (9) |
N1—C1—C2 | 121.6 (9) | C8—C9—C10 | 134.4 (10) |
N1—C1—C3i | 116.9 (9) | C9—C10—C11 | 134.6 (10) |
C2—C1—C3i | 121.5 (10) | C9—C10—C15 | 107.9 (9) |
Br1—C2—C1 | 119.1 (7) | C11—C10—C15 | 117.4 (10) |
Br1—C2—C3 | 118.8 (7) | C10—C11—C12 | 120.2 (11) |
C1—C2—C3 | 122.1 (9) | C10—C11—H1c11 | 119.88 |
C1i—C3—C2 | 116.4 (9) | C12—C11—H1c11 | 119.88 |
C1i—C3—H1c3 | 121.82 | C11—C12—C13 | 121.1 (11) |
C2—C3—H1c3 | 121.82 | C11—C12—H1c12 | 119.47 |
N1—C4—C5 | 128.9 (10) | C13—C12—H1c12 | 119.47 |
N1—C4—C9 | 109.2 (9) | C12—C13—C14 | 120.5 (11) |
C5—C4—C9 | 121.9 (9) | C12—C13—H1c13 | 119.75 |
C4—C5—C6 | 116.4 (10) | C14—C13—H1c13 | 119.75 |
C4—C5—H1c5 | 121.79 | C13—C14—C15 | 117.1 (11) |
C6—C5—H1c5 | 121.8 | C13—C14—H1c14 | 121.42 |
C5—C6—C7 | 123.2 (11) | C15—C14—H1c14 | 121.43 |
C5—C6—H1c6 | 118.42 | N1—C15—C10 | 107.8 (8) |
C7—C6—H1c6 | 118.42 | N1—C15—C14 | 128.5 (10) |
C6—C7—C8 | 118.9 (10) | C10—C15—C14 | 123.7 (10) |
Symmetry code: (i) x, −y, −z. |
Acknowledgements
The X-ray centre (XRC) of the TU Wien is acknowledged for providing access to the single-crystal and powder diffractometers. This publication was supported by TU Wien research funds. PK and JF gratefully acknowledge financial support by the Austrian Science Fund (FWF) (grant No. I 2589-N34). The authors thank Professor M. Nespolo and an anonymous referee for their critical comments, which helped to improve the manuscript.
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