research papers
Nollmotzite, Mg[UV(UVIO2)2O4F3]·4H2O, the first natural uranium oxide containing fluorine
aInstitute of Physics ASCR, v.v.i., Na Slovance 2, Praha 8, 18221, Czech Republic, bMineral Sciences Department, Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, CA 90007, USA, cDepartment of Geological Sciences, Faculty of Science, Masaryk University, Kotlářská 2, Brno, 61137, Czech Republic, and dDepartment of Mineralogy and Petrology, National Museum, Cirkusová 1740, Prague 9, 19300, Czech Republic
*Correspondence e-mail: plasil@fzu.cz
Nollmotzite (IMA2017-100), Mg[UV(UVIO2)2F3O4](H2O)4, is a new uranium oxide fluoride mineral found in the Clara mine, Black Forest Mountains, Germany. Electron microprobe analysis provided the (Mg1.06Cu0.02)Σ1.08[UV(UVIO2)2O3.85F3.15][(H2O)3.69(OH)0.31]Σ4.00 based on three U and 15 O + F atoms per formula unit. Nollmotzite is monoclinic, Cm, with a = 7.1015 (12) Å, b = 11.7489 (17) Å, c = 8.1954 (14) Å, β = 98.087 (14)°, V = 676.98 (19) Å3 and Z = 2. The [twinned by reticular refined to R = 0.0369 with GoF = 1.09 for 1527 unique observed reflections, I > 3σ(I)] is based upon [UV(UVIO2)2F3O4]2– sheets of β-U3O8 topology and contains an interlayer with MgF2(H2O)4 octahedra. Adjacent sheets are linked through F–Mg–F bonds, as well as via hydrogen bonds. The presence of fluorine and pentavalent uranium in the structure of nollmotzite has potentially important implications for the safe disposal of nuclear waste.
Keywords: nollmotzite; new mineral; uranium oxide fluoride; pentavalent uranium.
CCDC reference: 1843381
1. Introduction
Uranium oxides, especially those containing UVI as the uranyl (UO22+) ion, are important products of supergene weathering of primary UIV minerals, predominantly uraninite, UO2. Uranium dioxide, both in and uraninite, readily alters in the presence of water and oxygen resulting in the formation of uranyl-oxide hydroxy-hydrate minerals (UOH) (Finch & Ewing, 1992; Wronkiewicz et al., 1992, 1996; Janeczek et al., 1996, and others). UOH minerals are among the first phases to form during the oxidation–hydration weathering of UO2 (Finch & Ewing, 1992; Finch et al., 1996; Schindler & Hawthorne, 2004; Krivovichev & Plášil, 2013; Plášil, 2014). Because of their importance for nuclear waste disposal and the environmental chemistry of uranium in general (see e.g. O'Hare et al., 1988; Finch & Murakami, 1999; Klingensmith et al., 2007; Kubatko et al. 2006; Maher et al., 2013), studies describing their structures and physical–chemical properties, such as solubility and thermodynamic stability, are numerous. Herein, we provide a description of the new mineral nollmotzite, which is the first naturally occurring uranium oxide that contains fluorine. It also is noteworthy for containing uranium as both UV and UVI.
The name nollmotzite honors two German mineral collectors who discovered this new mineral; the name nollmotzite combines the first four letters of their surnames: Markus Noller (born 16.05.1977) and Reinhard Motzigemba (born 14.11.1952). Both the name and the new mineral were approved by the Commission on New Minerals, Nomenclature and Classification of the International Mineralogical Association (proposal IMA2017-100). The description is based on three cotype specimens deposited in the collections of the Natural History Museum of Los Angeles County, CA, USA, with catalog numbers 66647, 66648 and 66649.
2. Methodology
2.1. Sample
Nollmotzite was found in June 2016 on the dump of the famous Clara mine in the Black Forest Mountains, Baden-Württemberg, Germany. Nollmotzite grows in cavities in quartz gangue with abundant dark-violet (nearly black) fluorite (so-called stinkspath) and barite. It forms thin prisms, elongated on [010], with chisel-like terminations (Figs. 1 and 2) up to about 0.3 mm in length. Crystals exhibit the forms (100), , (001), , (120) and . They are deep-violet–brown in color and are transparent with vitreous luster. Nollmotzite is non-fluorescent under longwave and shortwave ultraviolet radiation. Crystals are brittle, with a perfect cleavage on {001}. Examination by polarized light microscopy shows that nollmotzite is strongly pleochroic, X = colorless, Y = red–brown, Z = deep violet (X << Y < Z). The optical orientation is X ≃ c*, Y = b, Z ≃ a (X^c ≃ 9° in obtuse β). Crystals are optically biaxial (−), with α = 1.615 (3), β = 1.750 (5), γ = 1.765 (5) (white light), naverage = 1.710, 2Vmeas = 37 (1)° from extinction data analyzed using EXCALIBRW (Gunter et al., 2004), 2Vcalc = 34.6°, dispersion is strong, r > v.
2.2. Electron microprobe
The chemical composition of nollmotzite was determined using a Cameca SX100 electron microprobe (WDS mode, 15 kV, 4 nA, 5 µm beam diameter). Because insufficient material was available for a direct determination of H2O, it has been calculated by stoichiometry on the basis of three U and 15 O + F atoms per formula unit (apfu) in accord with the determination. No other elements with atomic numbers higher than eight were observed. Analytical data are given in Table 1. The is (Mg1.06Cu0.02)Σ1.08[UV(UVIO2)2O3.85F3.15][(H2O)3.69(OH)0.31]Σ4.00 (note that the OH is for charge balance and does not imply that some H2O sites are OH).
‡Apportioned in accord to the structure. §Based on structure. |
2.3. Raman spectroscopy
Raman spectra of nollmotzite were recorded on a Horiba XploRA Plus spectrometer using a 532 nm c* (X optic direction), ⊥ to the sheet of U polyhedra; and || a (Z optic direction), || to the sheet of U polyhedra (Fig. 3).
The spectra were recorded in two orientations: ||2.4. X-ray diffraction
2.4.1. Powder diffraction
X-ray powder diffraction data were recorded using a Rigaku R-Axis Rapid II curved imaging plate microdiffractometer with monochromated Mo Kα. A Gandolfi-like motion on the φ and ω axes was used to randomize the sample. Observed d values and intensities were derived by profile fitting using JADE 2010 (https://materialsdata.com/prodjd.html/) software. Data are given in the Table S1. Unit-cell parameters refined from the powder data using JADE 2010 with whole pattern fitting are as follows: a = 7.117 (6) Å, b = 11.786 (7) Å, c = 8.203 (6) Å, β = 98.14 (2)°, with V = 681.1 (9) Å3 and Z = 2.
2.5. Single-crystal diffraction
For the single-crystal diffraction experiment, the crystal was selected under an polarized light microscope and mounted on a glass fiber. The diffraction experiment (see Table 2 for details) was performed at room temperature with a Rigaku SuperNova single-crystal diffractometer with an Atlas S2 CCD detector, using mirror monochromated Mo Kα radiation from a microfocus X-ray tube. According to the single-crystal X-ray experiment, nollmotzite is monoclinic, with Cm. Corrections for background, Lorentz, and polarization effects, as well as absorption correction were applied during data reduction in the CrysAlis (Rigaku Oxford Diffraction, 2017) package. Two datasets, representing two twin domains (characterized by distinct orientation matrix and related by the twin law) were produced by the data reduction (see §2.6). The bond-valence sums were calculated following the procedure of Brown (2002), and utilizing bond-valence parameters taken from Burns et al. (1997a) and Gagné & Hawthorne (2015).
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2.6. Structure solution and of the twinned structure
The structure of nollmotzite was solved from diffraction data using the charge-flipping algorithm of the program SHELXT (Sheldrick, 2015), and subsequently, it was refined using the Jana2006 (Petříček et al., 2014) program, based on F2. The output from the SHELXT program suggested for monoclinic Cm, which was later confirmed by the A quick test in Jana2006 revealed the possible presence of a twin by reticular (pseudo)merohedry (Petříček et al., 2016), which can be indexed in the orthorhombic super-cell. Careful inspection of diffraction frames and reconstruction of the of nollmotzite [UNWARP procedure in the CrysAlis (Rigaku Oxford Diffraction, 2017) software] confirmed the presence of diffractions of the second twin domain. The twin is by reflection on (100) leading to a complete overlap of reflections with h + k = 2n, and non-overlapping reflections occur at a third of the real c* parameter (Fig. 4). Taking the into account, the converged smoothly to more acceptable residuals (R = 3.69% with GoF = 1.09 for 1527 unique observed reflections) (Table 2). During final cycles of the the O2 and O6 atoms were restricted to have the same atomic displacement parameters, because the O2 atom returned a low atomic displacement parameter value (Uiso = 0.003 Å2). We cannot exclude the possibility that this site is partially occupied by F; however, a more probable explanation is that the low atomic displacement parameter is a relic resulting from an imperfect correction for the high absorption. Hydrogen atom positions were not determined due to the weak X-ray scattering factor of hydrogen and the predominance of uranium in the difference Fourier density maps. Final atom coordinates and displacement parameters are given in Tables S2 and S3, selected interatomic distances in Table 3 and bond-valence sums in Table 4.
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2.7. Voronoi–Dirichlet polyhedra calculations
According to the stereoatomic model of crystals (e.g. Blatov et al., 1995, 1999), their structure is considered as being a partition of the three-dimensional space, where geometrical images of atoms are their Voronoi–Dirichlet polyhedra (VDP). For details of the application of VDP to the crystal chemistry of uranium, we refer to the paper by Serezhkin (2007). The number of faces, the form and volume (VVDP) of the VDP are uniquely determined by the exact position of the atom in the particular structure. The linear parameters that characterize dimensions of a particular atom in the structure are the radius of the sphere, RSD (in Å) and its volume equal to VVDP (in Å3). Each face of VDP corresponds to a particular kind of interatomic interaction (i.e. bond). There are several parameters describing distortion of the atomic coordination in the VDP (Blatov et al., 1995; Blatov & Serezhkin, 2000); among them, the second G3, describing the deviation of the VDP from an ideal sphere and characterizing the uniformity of distribution of the atoms around the centroid atom (here U). For an ideal sphere G3 = 0.077, whereas for an ideal heteroatomic AX6 octahedron (which corresponds to a cubic VD polyhedron), G3 = 0.0833 (Blatov & Serezhkin, 2000). The properties of Voronoi–Dirichlet polyhedra were calculated by the program Topos (Blatov et al., 2014).
3. Results
3.1. Raman spectroscopy
In the region of O—H stretching vibrations, clear differences between two spectral orientations occur. In the spectrum || a, there is a pronounced two-component polarized band occurring at 3450 cm−1 (one at ∼3488 cm−1 and a stronger band at 3437 cm−1) and also an additional weak band at 3239 cm−1. These bands are related to the symmetric O—H stretching vibrations of the water molecules bonded in the structure by hydrogen bonds of distinct strengths. The hydrogen bonds in the studied crystal correspond to O⋯O distances in the range from 2.81 (3) to 2.90 (4) Å, fitting well with the correlation given by Libowitzky (1999). As expected, only a very weak band was observed at ∼3480 cm−1 in the spectrum || c*. We assume it is due to the fact that there are fewer hydrogen bonds from the interlayer to the structure sheets; most of the hydrogen bonds are more or less parallel to the structural sheets. There is no band observed related to H—O—H bending vibrations, which is not unusual for Raman spectroscopy. A weak band at 1444 cm−1, observed in the spectrum || c*, may be assigned to an overtone or a combination band. A very strong band observed at 815 cm−1 in the spectrum || a is attributed to the ν1 (UO2)2+ symmetric stretching vibration. According to Bartlett & Cooney (1989), an approximate U—O bond length of 1.8 Å is in line with the bond length obtained from the structure [c.f. U2—O = 1.77 (2) and 1.81 (2) Å]. These values are also in line with uranyl U—O lengths in UO7 pentagonal bipyramids given by Lussier et al. (2016). A very weak band at 808 cm−1 in the spectrum || c* may be attributed to the same vibration as the symmetric stretching mode should be highly polarizable. A band of high intensity at 716 cm−1 in the spectrum || a, and at 724 cm−1 in the spectrum || c*, is most probably connected with the ν1 U—F symmetric stretching vibration. The shift towards the lower energy is due to the higher mass of F compared with that of O. Shoulders at 676 and 586 cm−1 in the spectrum || a are assigned to libration modes of molecular H2O (Lutz, 1988). Bands of medium intensity at 466 and 425 cm−1, plus the weak band at 339 cm−1 (|| a), and strong bands at 427 and 340 cm−1 (|| c*) are connected with the ν(U—O,Fligand) vibrations. Weak bands at 295 cm−1 and 251 cm−1 (|| a) and a weak band at 240 cm−1 (|| c*) are assigned to the ν2 (δ) (UO2)2+ doubly degenerate bending vibrations. A band of medium intensity at 179 cm−1 (|| a) and a very weak band at 175 cm−1 (|| c*) may be assigned to the δ F–U–F bending vibrations; a shoulder- and a low-intensity band at 194 and 138 cm−1, respectively (|| a) and a weak band at 136 cm−1 (|| c*) are connected with translations and rotations of (UO2)2+ (Dothée & Camelot, 1982; Čejka et al., 1998).
3.2. Crystal structure
The structure of nollmotzite (Table S2) contains two U, one Mg, three F and seven O sites (including three O sites of the molecular H2O) (Fig. 5). The U1 site (Wyckoff notation 2a, m) is linked to six ligands, four O (O2 2×; O6 2×) and two F atoms (F2 and F3), while two F atoms are positioned at vertices of the tetragonal UF2O4 bipyramid. The U2 site (Wyckoff notation 4b, 1) is surrounded by seven ligands, including two axial uranyl O atoms (O1 and O5) and five equatorial ligands (O2 2×; O6 2×; F1), forming a UFO6 pentagonal bipyramid (Fig. 6). The bond lengths of the U1—F bonds are 2.19 and 2.21 Å (Table 3) and the bond-valence sums around the U1 site (Table 4) are consistent with this U being pentavalent. The uranyl pentagonal bipyramids share edges to form chains along [100] and chains of edge-sharing squares (occupied by UF4O2) and triangles along the same direction (Fig. 7a); this results in the sheets stacked perpendicular to [001], which belong to the β-U3O8 topology (Fig. 7b) (Burns, 2005). The Mg1 site is octahedrally coordinated by two mutually trans F atoms (belonging to the U1 site) and four O atoms in equatorial configuration (two O3 atoms related by symmetry, O4 and O7 atoms) that are H2O molecules. According to the results of the electron microprobe analyses, nollmotzite contains minor Cu along with dominant Mg. A partial substitution of Cu at the Mg site was documented by the site-scattering however, because of the small amount of Cu2+ entering the site (less than 0.2 atoms per unit cell), no distortion of the octahedral coordination due to the Jahn–Teller effect was observed (see polyhedral distortion parameters for the Mg polyhedron; Table 3). Adjacent sheets of U polyhedra are linked through the F—Mg—F linkages, as well as through hydrogen bonds. The arrangement of the hydrogen bonds network can be deduced based on the bond-valence analysis (Table 4). Within the structural sheets the only acceptors of the hydrogen bonds, which emanate from the H2O groups (O3, O5, O4, O7 coordinated to Mg1/Cu1 atom) in interlayer, are uranyl oxygen atoms (O1 and O5) linked to the U2 atom. The O⋯O distances related to hydrogen-bond interactions are 2.81 (3) Å (O3⋯O1), 2.83 (3) Å (O3⋯O5), 2.89 (3) Å (O4⋯O1), and 2.90 (4) Å (O7⋯O5). The respective angles (acceptor—donor—acceptor), O1—O4—O1 (101.8°), O5—O7—O5 (102.4°) and O1—O3—O5 (112.2°), are similar to the theoretical H—O—H angle (104.5°) in an H2O molecule.
The [6]Mg(H2[3]O)4}2+[UV(UVIO2)2F3O4]2–, Z = 2.
of nollmotzite obtained from the and bond-valence considerations is {4. Discussion
4.1. Nollmotzite and related minerals and compounds containing UV
Nollmotzite, Mg[UV(UVIO2)2F3O4](H2O)4, is the fourth mineral known to contain pentavalent uranium, the others being wyartite, Ca(CO3)[UV(UVIO2)2O4(OH)](H2O)7 (Burns & Finch, 1999), shinkolobweite, Pb1.25[UV(H2O)2(UVIO2)5O8(OH)2](H2O)5 (Olds et al., 2017), and richetite, Fe0.5Pb5[UV(UVIO2)17O18(OH)14](H2O)∼19.5 (Plášil, 2017). Dehydrated wyartite, Ca(CO3)[UV(UVIO2)2O4(OH)](H2O)3 (Hawthorne et al., 2006), which also contains UV, is not approved officially as a mineral by the International Mineralogical Association. While nollmotzite, both hydrated and dehydrated wyartite, and shinkolobweite contain structural sheets based on β-U3O8 topology, richetite possesses sheets of α-U3O8 topology (the fourmarierite type). The family of synthetic compounds that contains UV is broader. Among them, the most similar to the aforementioned mineral structures is that of synthetic [UV(H2O)2(UVIO2)2O4(OH)](H2O)4 (Belai et al., 2008), whose structure is also based upon sheets of β-U3O8 topology.
The incorporation of fluorine into uranyl oxide sheet structures has not been previously observed, but the nollmotzite structure demonstrates that it is possible. Both α-U3O8 and β-U3O8 topologies have the same U:O ratio (3:5), and also similar U:OH content (Krivovichev, 2013; Plášil, 2018). We can expect that the incorporation of fluorine is of equal probability for both topological types.
Recently, two synthetic phases, uranyl oxides that contain fluorine, have been synthesized. The structure of synthetic phase [(UO2)4F13][Sr3(H2O)8](NO3)·H2O (Jouffret et al., 2016) is based upon sheets, where fluorine acts as a ligand of pentagonal bipyramids coordinating UVI. Felder et al. (2018) synthesized a mixed CoII–uranyl–oxide–fluoride hexahydrate, [Co(H2O)6]3[U2O4F7]2. Nevertheless, this synthetic phase contains only hexavalent U. Thus, fluorine acts as an equatorial ligand of UO22+. The structure is based upon infinite chains of [U2O4F7] dimer units.
4.2. Remarks on the coordination of UV and UVI in the solid state
The UVI, present as the uranyl ion UO22+ (UrO2), occurs most typically in three types of coordination polyhedra: (1) square bipyramids (UrO2Φ4; four equatorial ligands), (2) pentagonal bipyramids (UrO2Φ5; five equatorial ligands), and (3) hexagonal bipyramids (UrO2Φ6; six equatorial ligands). A of bond lengths is observed for uranyl pentagonal and hexagonal bipyramids. For both, the U—Oyl bond lengths in the uranyl ion are significantly shorter than the U—Oeq bonds (Burns et al., 1997a; Lussier et al., 2016; following values are based upon 222 well refined structures). The average [7]U6+—Oyl is 1.793 Å (σ = 0.035 Å); [7]U6+—Oeq is 2.368 Å (σ = 0.100 Å). The average [8]U6+—Oyl bond is 1.783 (σ = 0.030 Å); the average U6+—Oeq bond is 2.460 Å (σ = 0.107 Å). In the case of [6]U6+, the uranyl cation is coordinated by four equatorial ligands with an average U—Oyl bond of 1.816 Å (σ = 0.050 Å) and an average U—Oeq bond of 2.264 (σ = 0.064 Å). Nevertheless, there are also examples of structures containing U6+ in a regular (or distorted) octahedral coordination, where the average U—O bond lengths are ∼2.1 Å (e.g. Morrison et al., 2011). Furthermore, in at least two reported structures (Wu et al., 2009; Unruh et al., 2010), [6]U6+ adopts an unusual tetraoxido core, wherein the four equatorial bonds of the octahedra are short, ∼1.8 Å, and the axial bonds are longer, ∼2.3 Å.
In contrast to UVI compounds, there are only a few well defined UV structures known. Among the oxo-compounds, the most common of UV is [7] (Table S4); there are 56 individual values with an average UV—O bond length of 2.25 Å (σ = 0.03 Å) (with the median at 2.20 Å); the distribution of bond lengths (Fig. S1) shows a positive skewness (1.335).
To probe the character of bonding interactions within the UV–Φ polyhedra, an analysis using Voronoi–Dirichlet polyhedra (VDP) was carried out, the results of which are given in Table 5. The values of the second momentum of inertia, G3, which characterizes the sphericity of VDP, ranges from 0.082 to 0.089. The G3 value of 0.082 is taken as the threshold indicating covalent bonding character (Blatov & Serezhkin, 2000). An interesting feature that distinguishes UV from UVI is the volume of corresponding VDP, and consequently also the equivalent radius, RSD. The relationship displayed in Fig. 8, showing a linear trend, allows UV (higher VDP) to be distinguished from UVI (lower VDP). The lowest VDP volume observed for UV is 9.62 Å3 (with equivalent radius, RSD, of 1.32 Å), while the largest VDP volume observed for UVI is 9.26 Å3 (with RSD = 1.30 Å).
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5. Implications
The formation of nollmotzite is a result of solid-state precipitation from U-containing aqueous solutions under partially reducing conditions. Nollmotzite contains ∼20 mol.% F in a structural unit, suggesting that the 2 was lower than under fully oxidizing conditions. The reducing environment was most probably enhanced by consumption of oxygen during the oxidation of abundant pyrite present in the gangue (crusts of FeIII oxyhydroxides are abundant on the samples). The major gangue minerals are dark varieties of fluorite (called stinkspath or antozonite), barite and quartz. The high of fluorine and low of oxygen led to the incorporation of fluorine into the sheet structure of nollmotzite and a partial reduction of UVI to UV. The discovery of nollmotzite contributes to the large body of radioactive-waste final-disposal research. In designing final repositories for the paradigm has shifted from using oxidative conditions towards using strongly reducing conditions (Ewing, 2015; Ewing et al., 2016; Rojo et al., 2018). Reducing environments are considered preferable to prevent the corrosion of the stainless steel tanks embedded in clay/cement after the closure of the repository. In spite of efforts to create overall reducing conditions, oxygen atoms will continue to be available from groundwater and/or dissolved oxygen-containing minerals in the backfill. Stainless steel used for the fabrication of tanks in the repository generally does not contain fluorine (even if there are some industrial passivation processes based on fluorination). However, traces of fluorine can be derived from dissolution of phosphate minerals present in the backfill, or it can be present in the groundwater. The corrosion processes take place at the interfaces between and tanks/backfill/surrounding rocks, and they are often bounded onto small (micro) areas with strong geochemical gradients.
of O6. Conclusions
The new mineral found at the Clara mine, Black Forest Mountains, Germany, is the first known naturally occurring uranium oxide that contains significant fluorine. Furthermore, the reducing conditions under which this mineral formed led to the partial reduction of the UVI to UV. Therefore, nollmotzite is one of the very few minerals containing pentavalent uranium. The characterization of new supergene uranium minerals with unusual structural and/or compositional features, such as nollmotzite, can provide valuable insights into processes that may occur during the long-term storage of spent nuclear fuel.
Supporting information
CCDC reference: 1843381
https://doi.org/10.1107/S2052520618007321/lo5026sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2052520618007321/lo5026Isup2.hkl
Supplementary tables S1, S2, S3, S4 and Fig. S1. DOI: https://doi.org/10.1107/S2052520618007321/lo5026sup3.pdf
Data collection: CrysAlis PRO 1.171.38.43 (Rigaku OD, 2015); cell
CrysAlis PRO 1.171.38.43 (Rigaku OD, 2015); data reduction: CrysAlis PRO 1.171.38.43 (Rigaku OD, 2015).Cu0.184F3H8Mg0.816O12U3 | F(000) = 828 |
Mr = 1002.7 | Dx = 4.919 Mg m−3 |
Monoclinic, Cm | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C -2y | Cell parameters from 695 reflections |
a = 7.1015 (12) Å | θ = 4.3–27.8° |
b = 11.7489 (17) Å | µ = 36.20 mm−1 |
c = 8.1954 (14) Å | T = 296 K |
β = 98.087 (14)° | Prismatic, violet |
V = 676.98 (19) Å3 | 0.07 × 0.01 × 0.01 mm |
Z = 2 |
SuperNova, Dual, Cu at zero, AtlasS2 diffractometer | 2022 independent reflections |
Radiation source: X-ray tube | 1527 reflections with I > 3σ(I) |
Mirror monochromator | Rint = 0.044 |
Detector resolution: 5.2027 pixels mm-1 | θmax = 29.3°, θmin = 3.4° |
ω scans | h = −8→8 |
Absorption correction: multi-scan CrysAlisPro 1.171.38.43 (Rigaku Oxford Diffraction, 2015) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. | k = −15→15 |
Tmin = 0.622, Tmax = 1 | l = −8→10 |
3100 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | H-atom parameters not defined? |
wR(F2) = 0.088 | Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0004I2) |
S = 1.09 | (Δ/σ)max = 0.030 |
2022 reflections | Δρmax = 2.74 e Å−3 |
56 parameters | Δρmin = −2.25 e Å−3 |
1 restraint | Absolute structure: 566 of Friedel pairs used in the refinement |
11 constraints |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
U1 | 0.5007 (4) | 0.5 | 0.8023 (5) | 0.0093 (3) | |
U2 | 0.0010 (4) | 0.69427 (4) | 0.7998 (4) | 0.00740 (18) | |
Mg1 | 0.506 (3) | 0.5 | 0.302 (4) | 0.014 (2) | 0.816 (16) |
Cu1 | 0.506 (3) | 0.5 | 0.302 (4) | 0.014 (2) | 0.184 (16) |
O1 | 0.049 (3) | 0.691 (2) | 1.022 (2) | 0.017 (6)* | |
O2 | 0.317 (3) | 0.6380 (18) | 0.796 (3) | 0.0074 (16)* | |
F1 | 0.001 (5) | 0.5 | 0.820 (4) | 0.023 (2)* | |
F2 | 0.533 (3) | 0.5 | 1.072 (4) | 0.023 (2)* | |
O3 | 0.529 (3) | 0.6749 (10) | 0.304 (3) | 0.023 (4)* | |
O4 | 0.219 (5) | 0.5 | 0.211 (5) | 0.028 (8)* | |
O5 | −0.023 (3) | 0.692 (2) | 0.582 (3) | 0.013 (5)* | |
F3 | 0.438 (3) | 0.5 | 0.530 (4) | 0.023 (2)* | |
O6 | 0.685 (3) | 0.6450 (18) | 0.793 (3) | 0.0074 (16)* | |
O7 | 0.813 (6) | 0.5 | 0.391 (7) | 0.053 (13)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
U1 | 0.0091 (3) | 0.0043 (4) | 0.0149 (6) | 0 | 0.0027 (3) | 0 |
U2 | 0.0055 (2) | 0.0013 (2) | 0.0155 (4) | 0.0000 (13) | 0.0020 (2) | −0.0034 (13) |
Mg1 | 0.026 (3) | 0.007 (3) | 0.006 (4) | 0 | −0.004 (3) | 0 |
Cu1 | 0.026 (3) | 0.007 (3) | 0.006 (4) | 0 | −0.004 (3) | 0 |
U1—O2 | 2.08 (2) | O1—O2 | 2.91 (3) |
U1—O2i | 2.08 (2) | O1—F1 | 2.78 (3) |
U1—F2 | 2.19 (3) | O1—O3v | 2.81 (3) |
U1—F3 | 2.21 (3) | O1—O4vi | 2.89 (3) |
U1—O6 | 2.16 (2) | O1—O6ii | 2.95 (3) |
U1—O6i | 2.16 (2) | O2—F1 | 2.80 (4) |
U2—O1 | 1.807 (18) | O2—O5 | 2.85 (3) |
U2—O2 | 2.34 (2) | O2—O5vii | 2.98 (3) |
U2—O2ii | 2.36 (2) | O2—F3 | 2.94 (4) |
U2—F1 | 2.289 (3) | O2—O6 | 2.62 (3) |
U2—O5 | 1.77 (2) | O2—O6ii | 2.71 (3) |
U2—O6iii | 2.31 (2) | F1—O5 | 2.98 (3) |
U2—O6ii | 2.30 (2) | F1—O5i | 2.98 (3) |
Mg1—Cu1 | 0 | F1—O6iii | 2.80 (4) |
Mg1—F2iv | 1.92 (4) | F1—O6viii | 2.80 (4) |
Mg1—O3 | 2.061 (12) | F2—O3vi | 2.80 (3) |
Mg1—O3i | 2.061 (12) | F2—O3ix | 2.80 (3) |
Mg1—O4 | 2.07 (4) | F2—O4vi | 2.65 (5) |
Mg1—F3 | 1.99 (4) | O3—O5vii | 2.83 (3) |
Mg1—O7 | 2.20 (5) | O3—F3 | 2.90 (3) |
Cu1—F2iv | 1.92 (4) | O3—O7 | 2.90 (3) |
Cu1—O3 | 2.061 (12) | O4—F3 | 2.85 (5) |
Cu1—O3i | 2.061 (12) | O5—O6iii | 2.93 (3) |
Cu1—O4 | 2.07 (4) | O5—O6ii | 2.84 (3) |
Cu1—F3 | 1.99 (4) | O5—O7iii | 2.90 (4) |
Cu1—O7 | 2.20 (5) |
Symmetry codes: (i) x, −y+1, z; (ii) x−1/2, −y+3/2, z; (iii) x−1, y, z; (iv) x, y, z−1; (v) x−1/2, −y+3/2, z+1; (vi) x, y, z+1; (vii) x+1/2, −y+3/2, z; (viii) x−1, −y+1, z; (ix) x, −y+1, z+1. |
Funding information
The following funding is acknowledged: this research was supported by the project No. LO1603 under the Ministry of Education, Youth and Sports National sustainability program I of the Czech Republic (grant No. LO1603 to Institute of Physics ASCR, v.v.i.) and by the Ministry of Culture of the Czech Republic (DKRVO 2108/02; National Museum 00023272) to JČ (grant No. DKRVO 2108/02 to National Museum in Prague).
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