Figure 6
Comparison of SSM and VAST (a), combinatorial extension (CE) (b) and DALI (c). PDB chain 1sar:A
(Sevcik et al., 1991) was used as a query for screening the whole PDB. Results for all of the structural neighbours identified by VAST, CE and DALI were selected from SSM's output and ordered by decreasing SSM's Q score [equation (8)]. Thick lines: SSM results; thin lines: results obtained from VAST, CE and DALI as indicated in the figure. |