Figure 5
Screenshot of the Jalview (https://www.jalview.org
; Clamp et al., 2004) multiple alignment editor and workbench. The figure illustrates a Jalview session with the structural multiple alignment from Fig. 2, a simple tree derived from the alignment and a structure for one of the domains displayed with the in-built Jmol application and coloured in the same way as the alignment. Mousing over a residue in the alignment view has highlighted the Arg residue in the Jmol view. Sequence alignments may be generated directly from Jalview as illustrated in the lower right of the screen for an alignment of the same sequences generated by MAFFT (Katoh et al., 2005). |