Figure 4
(a) The morphed trimmed model as shown in Fig. 3(d) is colored to indicate the segments that were correctly assigned to sequence (green) and those that were not assigned to sequence (blue) using phenix.resolve sequence assignment (Terwilliger, 2003). (b) Sequence assignment and loop building for the morphed trimmed model using phenix.assign_sequence, including information on loops that can be built connecting ends of the model and not allowing overlapping sequences. Coloring is as in (a), with segments that are incorrectly assigned in red. (c) Sequence assignment as in (b), requiring that the order of the segments in the model match that in the template. (d) As in (c), but iterating the assignment process. (e) As in (d), but superimposed on the final model of Cgl1109 (yellow). |