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Figure 2
Ribbon representation of the SCEDS fragments for the ten cases in the test set coloured by fragment number, sorted on number of residues. The residues in each fragment are listed in Table 3[link]. Fragment 1, green; fragment 2, blue; fragment 3, yellow; fragment 4, orange; fragment 5, salmon; residues excluded from the top NDOM fragments, magenta. NDOM = 2 unless otherwise stated. (a) Adenylate kinase, PDB entry 2eck , chain B; NDOM = 3. (b) Adenylate kinase, PDB entry 4ake , chain A; NDOM = 3. (c) Calmodulin, PDB entry 1ctr . (d) Calmodulin, PDB entry 1cll . (e) cAMP-dependent protein kinase, PDB entry 1atp . (f) Citrate synthase, PDB entry 5cse . (g) Glutamine-binding protein, PDB entry 1ggg . (h) Maltose-binding protein, PDB entry 1anf . (i) Pyruvate phosphate dikinase, PDB entry 1kbl . (j) Pyruvate phosphate dikinase, PDB entry 2r82 . The figures were prepared with PyMOL (DeLano, 2002BB8).

Journal logoBIOLOGICAL
ISSN: 1399-0047
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