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Figure 5
PPAD tests. In runs 1 and 2 coil residues were kept, and run 2 included LLG-guided pruning. In run 3 coil was removed and the models were subjected to gyre and gimble refinement. (a) Superposition between the 1zbr template (orange) and the final structure (blue). The r.m.s.d. is 1.57 Å for a core of 231 Cα atoms. (b) First level of annotation for the decomposition used in run 3. (c) wMPE of solutions versus the model centre in run 2. (d) Number of residues removed by the LLG-guided pruning against wMPE in run 2. (e) The coloured cartoon shows solving fragments from run 2 that clustered together and the grey ribbon shows the final structure. (f) R.m.s.d. to the final structure for each of the three correct fragments in run 3. Values at different refinement stages are calculated over a common core.

Journal logoSTRUCTURAL
ISSN: 2059-7983
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