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Figure 7
Model and map (PDB and EMDB codes 6CRZ and 7577, respectively; resolution 3.3 Å) showing a combination of two issues. (a) Some parts of the model do not fit the map. (c, d, e) Improvements that can be achieved after a round of refinement using phenix.real_space_refine: compare the model-to-map fit before (red) and after (black) refinement. (b) Model–map correlation CCmask shown per residue: red and black are before and after refinement, respectively.

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