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Figure 2
The side-chain descriptor. (a) Connected component of a graph (shown in red) built on points sampled in a 2.8 Å resolution 2mFoDFo density map at a 1.8σ density level calculated for a refined model of SAM synthetase 2 (PDB entry 2ydx). The side chain of the Trp2016 residue from chain C (Trp2016C) is shown in black. (b) A comparison between the change in median side-chain density volumes (with 80% confidence intervals) at different map thresholds for tryptophan and valine residues in the training set. (c) A comparison of the median side-chain density volumes for all residue types.

Journal logoSTRUCTURAL
BIOLOGY
ISSN: 2059-7983
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