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Figure 11
CDL/E&H versus Amber improvements in steric contacts for the helix-cap in PDB entry 3g8L, quantified by all-atom contact dot or spike counts measured in Mage (Richardson & Richardson, 2001BB49), normalized relative to the counts in the deposited structure with PDB code 3g8L. Amber changes farthest, in the right direction, for all four contact types.

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