August 2020 issue
A 1.6 Å resolution MicroED data set of proteinase K is phased using fragments derived from distantly related sequence homologues. ARCIMBOLDO_SHREDDER expands the phasing options for MicroED applications, overcoming the need for complete and highly accurate search models.
Two neural networks were trained to predict the correctness of protein residues by combining multiple validation metrics in Coot. Using the predicted correctness to automatically prune models led to significant improvements in the Buccaneer pipeline.
Methods for obtaining the maximum out of a cryo-EM data-collection session are described.
Based on crystal structures of HIRAN in complex with duplex DNA, the mechanism of replication-fork regression underlying the sequence-independent recognition of nucleobases by HIRAN is discussed.
A quadrature is developed that allows the efficient evaluation of an intensity-based likelihood target function that includes experimental errors.
The benefits are shown of combining a high-density protein-crystallization technique (counter-diffusion) with in situ room-temperature data collection at synchrotron sources as an approximation to serial crystallography, without compromising data quality.
The X-ray crystallographic structure of an N-terminal fragment of group B streptococcus BibA (BibA126–398) and a low-resolution structure of the full-length N-terminal domain (BibA34–400) determined using small-angle X-ray scattering are described. The association of the N-terminal domain of BibA was localized to the C4BP α-chain.
FragMAX is the fragment-screening platform of BioMAX, the macromolecular crystallography beamline of the MAX IV Laboratory. It provides support for users during sample preparation, data collection and data analysis through its in-house-developed software, FragMAXapp.
Crystal structures of XacGST, a glutathione S-transferase from the citrus canker pathogen Xanthomonas citri subsp. citri, with and without glutathione are reported.