Figure 3
Diagonal plots of PDB-REDO versus PDB showing the effect on (a) Rfree, (b) clashscore (four outlier cases with clashscore > 100 in the PDB and one case with clashscore > 100 in PDB-REDO not shown), (c) confal score, (d) hydrogen-bond length rmsZ (one case with rmsZ = 20 in the PDB model not shown), (e) base-pair shearing, (f) base-pair stretching, (g) base-pair buckling and (h) base-pair propeller twisting. Emoticons mark the side of the diagonal that indicates an improvement. All scores are in arbitrary units (AU). Significant changes are marked in blue. No measure of significance is available for clashscore and confal score. |