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Figure 2
For each data set, the deposited or fitted model (yellow) was used to create a reference model (teal) for each cryo-EM search model by superimposing the cryo-EM search model onto the fitted model with GESAMT. This was used to calculate the r.m.s.d. between the reference model and the placed model (purple) on a chain-to-chain basis. Shown here is the deposited model (PDB entry 4aaq) for EMDB entry EMD-1998 (8 Å resolution) and the reference model and the placed cryo-EM search model for PDB entry 1a6d. Also shown is a fitted model (PDB entry 1oel) for EMDB entry EMD-5143 (18 Å); PDB entry 1oel fitted models were used when deposited models were unavailable. |
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