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Figure 6
PDB entry 1sjp (59% sequence identity) pre-processed with CHAINSAW and fitted into EMDB entry EMD-1997 (7 Å resolution). Correctly placed (according to the r.m.s.d. scoring metric; Section 2.4 ) chains are shown in yellow and incorrectly placed chains are shown in purple. The incorrectly placed chains correspond to the final four models placed by MOLREP. Examining the packing-function scores from MOLREP in detail indicated that there were a lot more clashes to deal with when placing these models into the map. Thie figure was made using UCSF Chimera (version 1.5). |
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