Monomodular Pseudomonas aeruginosa phage JG004 lysozyme (Pae87) contains a bacterial surface-active antimicrobial peptide-like region and a possible substrate-binding subdomain

Vázquez, R.; Seoane-Blanco, M.; Rivero-Buceta, V.; Ruiz, S.; van Raaij, M.J.; García, P.

doi:10.1107/S2059798322000936

Acta Crystallographica Section D
Acta Crystallographica
Section D STRUCTURAL BIOLOGY

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Figure 1
Overview of the Muramidase domain family. (a) Sunburst taxonomical representation of organisms bearing predicted Muramidase (PF11860)-containing proteins as taken from Pfam. (b) Main architectures found among Muramidase-containing proteins in Pfam. The numbers on the left are the number of representatives predicted to have such an architecture [PG1, blue boxes, PG_binding_1 (PF01471); SH35, orange boxes, SH3_5 (PF08460); LysM, green boxes, PF01476]. (c) SSN comprising the predicted Muramidase-bearing proteins in InterPro entry IPR024408 corresponding to the Muramidase family. (d, e) Distribution of catalytic domains in the phage lysin curated database $[{\bb S}^{\rm LYS}]$ (d) or in the subset $[{\bb S}^{\rm LYS}]$ comprising only those lysins from phages that infect Gram-negative bacteria (e). (f) Length distribution of the Muramidase-containing lysins in $[{\bb S}^{\rm LYS}]$ ( $[{\bb S}^{\rm MUR}]$ ). (g) Distribution of the number of predicted domains in $[{\bb S}^{\rm MUR}]$ . (h) Architectures found in $[{\bb S}^{\rm MUR}]$ . (i) SSN of $[{\bb S}^{\rm MUR}]$ .

STRUCTURAL
BIOLOGY

ISSN: 2059-7983

Volume 78| Part 4| April 2022| Pages 435-454

https://doi.org/10.1107/S2059798322000936

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