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![[Figure 4]](lie5001fig4mag.jpg)
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Figure 4
Dependence of metrics on the sequence length in predictions of AlphaFold3 (Abramson et al., 2024  ) on the five test sets. For some of the predictions, we show the predicted structure (in blue or purple if predicted using context) aligned with the native structure (in orange) using US-align (Zhang, Shine et al., 2022). The metrics are RMSD, MCQ (Zok et al., 2014), TM-score (Zhang & Skolnick, 2004; Zhang, Shine et al., 2022), lDDT (Mariani et al., 2013) and INF-ALL (Parisien et al., 2009). RMSD and MCQ are reversed to have the best values near the top and the worst values at the bottom. |
![[Figure 4]](lie5001fig4.jpg)
 | STRUCTURAL BIOLOGY |
ISSN: 2059-7983
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