issue contents

Journal logoJOURNAL OF
ISSN: 1600-5767

June 2008 issue

Highlighted illustration

Cover illustration: Two-dimensional grazing-incidence X-ray scattering pattern for a PS-b-PI thin film deposited on a silicon substrate. Courtesy of Sangwoo Jin et al. [J. Appl. Cryst. (2007), 40, 950-958].

lead articles

J. Appl. Cryst. (2008). 41, 491-522
doi: 10.1107/S0021889808007279
link to html
The algorithms underlying small-molecule refinement programs are described in nonmathematical terms, together with practical examples and advice on their use.

research papers

J. Appl. Cryst. (2008). 41, 523-530
doi: 10.1107/S0021889808005098
link to html
Dual polarization interferometry supports recent hypotheses that the critical nuclei of protein crystals arise from a large stable disordered protein aggregate. It also promises early detection for the onset of protein crystallization in crystallization trials.

J. Appl. Cryst. (2008). 41, 531-536
doi: 10.1107/S0021889808005463
link to html
Errors on anisotropic displacement parameters are propagated to bond-length and angle corrections from TLS analysis via errors on the TLS parameters.

J. Appl. Cryst. (2008). 41, 537-543
doi: 10.1107/S0021889808005943
link to html
Simulations using the Debye formula have been performed to explain the X-ray powder diffraction patterns of stress-free and homogeneous samples of nitrogen-expanded austenite, synthesized by low-temperature gaseous nitriding of stainless steel.

J. Appl. Cryst. (2008). 41, 544-547
doi: 10.1107/S0021889808007309
link to html
The atomic positions of Mn impurities in GaMnAs layers were determined by means of X-ray diffuse scattering.

J. Appl. Cryst. (2008). 41, 548-553
doi: 10.1107/S002188980800945X

J. Appl. Cryst. (2008). 41, 554-562
doi: 10.1107/S0021889808007905
link to html
Correct incorporation of finite size effects on the pair distribution function of nanoparticles is important for quantifying the structural effects of finite particle size in nanomaterials.

J. Appl. Cryst. (2008). 41, 563-571
doi: 10.1107/S0021889808006444
link to html
This paper describes the modelling of the azimuthal scattering profiles of high-performance fibres in an on-axis microdiffraction geometry.

J. Appl. Cryst. (2008). 41, 572-583
doi: 10.1107/S0021889808006894
link to html
Time-resolved diffraction studies into the pressure acid leaching of nickel laterite ores have been conducted using laboratory X-ray and synchrotron radiation sources. The results are compared with respect to reaction mechanism and data analysis techniques.

J. Appl. Cryst. (2008). 41, 584-591
doi: 10.1107/S0021889808008649
link to html
A series of possible growth faces (hkl) were determined from the crystal lattice and symmetry of Yb3+-doped NaY(WO4)2 according to the Bravais–Friedel Donnay–Harker theory, and the relationship among crystal structure, growth habits and crystal morphology is discussed. In addition, the thermal properties of the crystal, including the specific heat, thermal expansion, thermal diffusion and thermal conductivity, are investigated.

J. Appl. Cryst. (2008). 41, 592-599
doi: 10.1107/S0021889808011527
link to html
Correcting resolution bias in electron density maps provides additional power to direct methods when applied to powder data.

J. Appl. Cryst. (2008). 41, 600-605
doi: 10.1107/S0021889808010716
link to html
Diffraction images from an incommensurately modulated crystal containing the profilin:actin complex were indexed using software developed for small-molecule modulated and twinned crystals.

J. Appl. Cryst. (2008). 41, 606-614
doi: 10.1107/S0021889808012491
link to html
Computer simulations have been carried out to test the recently proposed model for the nanodomain structure of relaxor ferroelectrics such as lead zinc niobate (PZN). The present results confirm that \langle {100} \rangle and \langle {111} \rangle as well as the previously proposed \langle {110} \rangle types of Pb displacement are viable possibilities, but the number of domain boundaries required to produce sufficiently strong diffuse rods of scattering means that individual domains cannot be described as three-dimensional and must still be considered to be relatively thin plates.

J. Appl. Cryst. (2008). 41, 615-627
doi: 10.1107/S0021889808012223
link to html
A new anisotropic size-broadening model, based on a spherical-harmonics representation and convenient for implementation into Rietveld programs, is described. The model is interpreted in terms of physical models by using ellipsoidal and cylindrical crystallites with lognormal size distributions.

J. Appl. Cryst. (2008). 41, 628-633
doi: 10.1107/S0021889808012648
link to html
The effect of moisture content on native soy glycinin is determined using small-angle scattering techniques. Scattering data suggest that the protein expands as the moisture content increases and a hexagonal crystal structure is demonstrated. Scattering data are complemented by electron microscopy, indicating a corresponding expansion of the microstructure with moisture content.

short communications

J. Appl. Cryst. (2008). 41, 634-636
doi: 10.1107/S0021889808005876
link to html
The structure of the title compound was optimized by energy minimization in the solid state at the DFT level of theory using the lattice parameters obtained from high-temperature synchrotron X-ray powder diffraction data.

J. Appl. Cryst. (2008). 41, 637-640
doi: 10.1107/S0021889808006481
link to html
The pressure dependences of the lattice parameters of two spin transition compounds, Fe(PM–AzA)2(NCS)2 and Fe(PM–BiA)2(NCS)2 [PM is N-2′-pyridylmethylene, AzA is 4-(phenylazo)aniline and BiA is 4-aminobiphenyl], have been derived from neutron powder diffraction measurements at ambient temperature.

computer programs

J. Appl. Cryst. (2008). 41, 641-643
doi: 10.1107/S0021889808006985
link to html
The CHAINSAW program, which mutates template structures for use in molecular replacement, is described.

J. Appl. Cryst. (2008). 41, 644-646
doi: 10.1107/S0021889808007966
link to html
A new version of SnB implements the triplet sieve method for phasing centrosymmetric structures.

J. Appl. Cryst. (2008). 41, 647-652
doi: 10.1107/S0021889808008625
link to html
A program for visual demonstration of reciprocal-space building for crystals and the principles of X-ray (electron, neutron) diffraction on bulk and two-layered crystals is presented.

J. Appl. Cryst. (2008). 41, 653-658
doi: 10.1107/S0021889808012016
link to html
A cross-platform program, VESTA, has been developed for three-dimensional visualization of both structural models and volumetric data such as electron and nuclear densities, Patterson functions, and wavefunctions.

letters to the editor

J. Appl. Cryst. (2008). 41, 659
doi: 10.1107/S0021889808008832
link to html
It is suggested that it would be useful if raw X-ray diffraction images could be included in data depositions with the Protein Data Bank.

Follow J. Appl. Cryst.
Sign up for e-alerts
Follow J. Appl. Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds