ARCIMBOLDO

Borges started at: 2014-08-10 10:03.

=============================INPUT FILE 10_6.bor=============================

[ARCIMBOLDO]
shelxe_line = -m30 -v0 -a3 -t20 -q -s0.65
topbtf_n = 50
sampling_rotation = -1
toprnp_n = 200
pack_clashes = 0
resolution_rotation = 1.0
use_packing = True
rotation_clustering_algorithm = rot_matrices
topfrf_n = 100
force_core = -1
molecular_weight = 22000
topftf_n = 50
topexp_n = 60
toppack_1 = 10000
threshold_algorithm = 15
topfrf_1 = 1000
sigf_label = SIGF
f_label = F
fragment_to_search = 6
topbrf_n = 100
toprnp_1 = 1000
force_exp = False
topbtf_1 = 50
pack_distance = 3.0
number_of_component = 1
resolution_translation = 1.0
identity = 0.2
exclude_zscore = 0
exclude_llg = 0
rmsd = 0.2
topbrf_1 = 1000
tncs = True
resolution_refinement = 1.0
toppack_n = 10000
post_mortem = False
topexp_1 = 60
topftf_1 = 50
rncs_matl = []
name_job = gr_def
spacegroup = 
helix_length = 10
sampling_refinement = -1
sampling_translation = -1

[GENERAL]
pdb_path = 
ent_path = 
mtz_path = %(data_directory)s/sad.mtz
working_directory = %(data_directory)s/10_6
hkl_path = %(data_directory)s/sad.hkl
data_directory = gr
mtz_p1_path = 

[LOCAL]
path_local_phaser = phaser
path_local_shelxe = shelxe

============================================Summary of your data=====================================================

SPACEGROUP: C 1 2 1
CELL DIMENSIONS: 95.87, 37.78, 101.43, 90.00, 96.84, 90.00
RESOLUTION: 1.73
NUMBER OF UNIQUE REFLECTIONS: 36355.00

2. STEP: Locating Sequentially the Fragments

Fragment 1
Cluster Rotation Function Translation Function Packing Rigid Body Refinement Initial CC Best Trace CC/aa
#Rots. Top LLG Mean LLG Top Zscore Mean Zscore #Trans. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG After Refinement CC Cycle CC #Res. traced
0 6 25.66 20.41 3.39 2.81 14 38.48 34.62 6.10 4.70 8 35.38 34.30 5.39 4.44 8 37.90 36.71 5.42
1 4 21.24 19.74 2.90 2.73 6 33.85 32.28 5.80 5.33 1 33.85 33.85 5.39 5.39 1 42.10 42.10 5.83
4 1 19.40 19.40 2.69 2.69 1 30.93 30.93 5.09 5.09 1 30.93 30.93 5.09 5.09 1 34.30 34.30 4.12
Fragment 2
Cluster Rotation Function Translation Function Packing Rigid Body Refinement Initial CC Best Trace CC/aa
#Rots. Top LLG Mean LLG Top Zscore Mean Zscore #Trans. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG After Refinement CC Cycle CC #Res. traced
(0, 7) 25 57.13 54.40 2.71 2.54 114 105.54 78.37 9.15 6.60 2 105.54 96.59 9.15 8.41 2 114.20 104.40 8.10
(0, 8) 23 57.87 54.80 2.81 2.58 108 115.27 80.54 11.25 7.28 1 115.27 115.27 11.25 11.25 1 128.10 128.10 9.88
Fragment 3
Cluster Rotation Function Translation Function Packing Rigid Body Refinement Initial CC Best Trace CC/aa
#Rots. Top LLG Mean LLG Top Zscore Mean Zscore #Trans. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG After Refinement CC Cycle CC #Res. traced
(0, 0, 7) 10 129.04 119.16 2.64 2.29 8 175.09 157.32 8.65 7.27 1 175.09 175.09 8.65 8.65 1 198.80 198.80 10.19
(0, 0, 8) 4 143.92 141.84 2.51 2.27 4 190.81 177.75 8.86 7.62 1 186.28 186.28 8.21 8.21 1 217.30 217.30 11.19
(0, 7, 15) 5 128.14 119.30 2.56 2.30 2 201.39 178.02 12.16 10.13 1 201.39 201.39 12.16 12.16 1 236.10 236.10 11.49
(0, 7, 17) 7 129.11 127.02 2.56 2.32 5 224.01 205.49 13.30 11.40 1 180.87 180.87 9.17 9.17 1 276.40 276.40 12.63
(0, 8, 16) 4 144.55 143.51 2.58 2.46 5 185.95 174.73 8.15 7.46 2 185.95 183.59 8.15 7.99 2 236.10 212.85 11.58
(0, 8, 17) 6 144.47 142.67 2.57 2.37 4 248.49 229.86 13.71 12.10 1 195.81 195.81 9.06 9.06 1 293.00 293.00 13.42
Fragment 4
Cluster Rotation Function Translation Function Packing Rigid Body Refinement Initial CC Best Trace CC/aa
#Rots. Top LLG Mean LLG Top Zscore Mean Zscore #Trans. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG After Refinement CC Cycle CC #Res. traced
(0, 0, 7, 49) 3 191.45 189.88 2.48 2.30 1 275.02 275.02 13.01 13.01 1 275.02 275.02 13.01 13.01 1 342.90 342.90 13.47
(0, 0, 8, 16) 10 241.18 215.44 2.46 2.23 9 297.18 263.31 9.66 9.07 4 297.18 270.31 9.66 9.06 3 339.20 307.27 12.12
(0, 0, 8, 48) 6 205.80 204.44 2.68 2.53 3 292.57 265.63 12.14 10.08 3 292.57 265.63 12.14 10.08 3 342.90 323.80 13.46 2 36.55 183
(0, 7, 15, 52) 5 247.92 246.66 2.56 2.42 5 381.68 341.67 15.90 12.79 2 316.34 294.26 10.75 9.38 2 448.80 369.15 16.03
(0, 7, 17, 49) 3 283.75 282.22 2.40 2.23 1 409.91 409.91 15.90 15.90 1 409.91 409.91 15.90 15.90 1 448.90 448.90 16.04
(0, 8, 17, 48) 7 308.78 306.95 2.76 2.55 5 416.74 362.82 13.82 9.91 5 416.74 362.82 13.82 9.91 5 450.10 409.92 16.03
Fragment 5
Cluster Rotation Function Translation Function Packing Rigid Body Refinement Initial CC Best Trace CC/aa
#Rots. Top LLG Mean LLG Top Zscore Mean Zscore #Trans. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG After Refinement CC Cycle CC #Res. traced
(0, 8, 17, 48, 117) 8 460.14 431.87 2.79 2.61 114 471.70 427.98 8.04 5.86 2 382.60 372.81 8.04 7.97 2 498.40 486.55 15.93 3 36.5 182
(0, 8, 17, 48, 119) 8 456.39 418.91 2.60 2.43 42 481.45 404.21 8.79 6.45 1 468.46 468.46 7.64 7.64 1 504.80 504.80 15.75
Fragment 6
Cluster Rotation Function Translation Function Packing Rigid Body Refinement Initial CC Best Trace CC/aa
#Rots. Top LLG Mean LLG Top Zscore Mean Zscore #Trans. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG Top Zscore Mean Zscore #Sol. Top LLG Mean LLG After Refinement CC Cycle CC #Res. traced
(0, 8, 17, 48, 117, 229) 6 505.37 492.79 2.59 2.47 19 514.25 486.47 7.71 6.50 2 514.25 501.77 7.71 7.62 2 534.00 521.30 16.04

The current best solution is: th10_0_0xx4FR3_7-1.pdb with FINALCC: 36.55 and n. residues traced 183
file is: gr/10_6/8_EXP_LIBRARY/2/0/th10_0_0xx4FR3_7-1.pdb

It seems you have a good solution!
Here you can find the best solution and map for further refinement.

Time MODE: ARCIMBOLDO-CLUSTERS STEP: FRF 2014-08-10 10:03
Time MODE: ARCIMBOLDO STEP: TABLE 2014-08-10 10:03
Time MODE: ARCIMBOLDO STEP: FTF 2014-08-10 10:04
Time MODE: ARCIMBOLDO STEP: PACK 2014-08-10 10:04
Time MODE: ARCIMBOLDO STEP: RNP 2014-08-10 10:04
Time MODE: ARCIMBOLDO STEP: INITCC 2014-08-10 10:04
Time MODE: ARCIMBOLDO STEP: TABLE 2014-08-10 10:05
Time MODE: ARCIMBOLDO STEP: FTF 2014-08-10 10:06
Time MODE: ARCIMBOLDO STEP: PACK 2014-08-10 10:06
Time MODE: ARCIMBOLDO STEP: RNP 2014-08-10 10:06
Time MODE: ARCIMBOLDO STEP: INITCC 2014-08-10 10:06
Time MODE: ARCIMBOLDO STEP: TABLE 2014-08-10 10:06
Time MODE: ARCIMBOLDO STEP: FTF 2014-08-10 10:07
Time MODE: ARCIMBOLDO STEP: PACK 2014-08-10 10:07
Time MODE: ARCIMBOLDO STEP: RNP 2014-08-10 10:07
Time MODE: ARCIMBOLDO STEP: INITCC 2014-08-10 10:07
Time MODE: ARCIMBOLDO STEP: TABLE 2014-08-10 10:07
Time MODE: ARCIMBOLDO STEP: FTF 2014-08-10 10:09
Time MODE: ARCIMBOLDO STEP: PACK 2014-08-10 10:09
Time MODE: ARCIMBOLDO STEP: RNP 2014-08-10 10:09
Time MODE: ARCIMBOLDO STEP: INITCC 2014-08-10 10:09
Time MODE: ARCIMBOLDO STEP: TABLE 2014-08-10 10:10
Time MODE: ARCIMBOLDO STEP: FTF 2014-08-10 10:12
Time MODE: ARCIMBOLDO STEP: PACK 2014-08-10 10:12
Time MODE: ARCIMBOLDO STEP: RNP 2014-08-10 10:13
Time MODE: ARCIMBOLDO STEP: INITCC 2014-08-10 10:13
Time MODE: ARCIMBOLDO STEP: TABLE 2014-08-10 10:13
Time MODE: ARCIMBOLDO STEP: FTF 2014-08-10 10:14
Time MODE: ARCIMBOLDO STEP: PACK 2014-08-10 10:14
Time MODE: ARCIMBOLDO STEP: RNP 2014-08-10 10:14
Time MODE: ARCIMBOLDO STEP: INITCC 2014-08-10 10:14
Time MODE: ARCIMBOLDO STEP: FAST_1 2014-08-10 10:47
Time MODE: ARCIMBOLDO STEP: FAST_2 2014-08-10 11:13
Time MODE: ARCIMBOLDO STEP: FAST_3 2014-08-10 11:40