The crystal structures of 1-{5-[4,6-bis(methylsulfanyl)-2H-pyrazolo[3,4-d]pyrimidin-2-yl]pentyl}-6-methylsulfanyl-4-(pyrrolidin-1-yl)-1H-pyrazolo[3,4-d]pyrimidine, C22H29N9S3, and 6-methylsulfanyl-1-{5-[6-methylsulfanyl-4-(pyrrolidin-1-yl)-2H-pyrazolo[3,4-d]pyrimidin-2-yl]pentyl}-4-(pyrrolidin-1-yl)-1H-pyrazolo[3,4-d]pyrimidine, C25H34N10S2, which differ in having either a pyrrolidine substituent or a methylsulfanyl group, show intermolecular stacking due to aromatic π–π interactions between the pyrazolo[3,4-d]pyrimidine rings.
Supporting information
CCDC references: 204051; 204052
Compounds (II) and (III) were prepared by refluxing a solution of (I) with pyrrolidine in benzene. Diffraction quality crystals of (II) were obtained from ethyl acetate solution, while crystals of (III) were isolated from chloroform-ethyl acetate (1:1) by slow evaporation of the solvent at room temperature.
For both compounds, data collection: XSCANS (Siemens, 1996); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXTL (Bruker, 1997); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
(II) 1-{5-[4,6-bis(methylsulfanyl)-2
H-pyrazolo[3,4-
d]pyrimidin-2-yl]pentyl}- 6-methylsulfanyl-4-(pyrrolidin-1-yl)-1
H-pyrazolo[3,4-
d]pyrimidine
top
Crystal data top
C22H29N9S3 | F(000) = 544 |
Mr = 515.72 | Dx = 1.336 Mg m−3 |
Triclinic, P1 | Melting point = 421–422 K |
a = 10.1195 (8) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 11.865 (1) Å | Cell parameters from 39 reflections |
c = 12.271 (1) Å | θ = 4.9–12.5° |
α = 70.563 (7)° | µ = 0.32 mm−1 |
β = 70.092 (8)° | T = 293 K |
γ = 73.452 (7)° | Block, colourless |
V = 1281.7 (2) Å3 | 0.44 × 0.30 × 0.22 mm |
Z = 2 | |
Data collection top
Bruker P4 diffractometer | Rint = 0.018 |
Radiation source: fine-focus sealed tube | θmax = 26.0°, θmin = 1.8° |
Graphite monochromator | h = −1→12 |
θ/2θ scans | k = −13→14 |
5878 measured reflections | l = −14→15 |
4980 independent reflections | 3 standard reflections every 97 reflections |
3921 reflections with I > 2σ(I) | intensity decay: none |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.119 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0519P)2 + 0.4512P] where P = (Fo2 + 2Fc2)/3 |
4980 reflections | (Δ/σ)max < 0.001 |
310 parameters | Δρmax = 0.38 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
Crystal data top
C22H29N9S3 | γ = 73.452 (7)° |
Mr = 515.72 | V = 1281.7 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 10.1195 (8) Å | Mo Kα radiation |
b = 11.865 (1) Å | µ = 0.32 mm−1 |
c = 12.271 (1) Å | T = 293 K |
α = 70.563 (7)° | 0.44 × 0.30 × 0.22 mm |
β = 70.092 (8)° | |
Data collection top
Bruker P4 diffractometer | Rint = 0.018 |
5878 measured reflections | 3 standard reflections every 97 reflections |
4980 independent reflections | intensity decay: none |
3921 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.119 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.38 e Å−3 |
4980 reflections | Δρmin = −0.34 e Å−3 |
310 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 1.18627 (7) | 0.02545 (6) | 0.22455 (6) | 0.06775 (19) | |
S2 | 0.16158 (6) | 0.59877 (7) | 0.56461 (6) | 0.0679 (2) | |
S3 | 0.60172 (7) | 0.60176 (6) | 0.69669 (5) | 0.06484 (19) | |
N1 | 0.85463 (19) | 0.29772 (17) | −0.02980 (16) | 0.0566 (4) | |
N2 | 0.8494 (2) | 0.3126 (2) | −0.14374 (18) | 0.0677 (5) | |
C3 | 0.9591 (3) | 0.2345 (2) | −0.1880 (2) | 0.0626 (6) | |
H3 | 0.9815 | 0.2252 | −0.2650 | 0.075* | |
C3A | 1.0386 (2) | 0.16631 (19) | −0.10465 (18) | 0.0493 (5) | |
C4 | 1.1624 (2) | 0.07312 (18) | −0.09477 (19) | 0.0492 (5) | |
N5 | 1.20050 (19) | 0.03564 (15) | 0.00867 (16) | 0.0516 (4) | |
C6 | 1.1194 (2) | 0.08781 (18) | 0.09716 (19) | 0.0494 (5) | |
N7 | 1.00264 (18) | 0.17427 (16) | 0.10119 (15) | 0.0510 (4) | |
C7A | 0.9674 (2) | 0.21054 (19) | −0.00398 (18) | 0.0484 (5) | |
C8 | 0.7487 (2) | 0.3724 (2) | 0.0439 (2) | 0.0596 (6) | |
H8A | 0.7610 | 0.3435 | 0.1243 | 0.071* | |
H8B | 0.6540 | 0.3638 | 0.0494 | 0.071* | |
C9 | 0.7583 (3) | 0.5049 (2) | −0.0044 (2) | 0.0636 (6) | |
H9A | 0.7624 | 0.5308 | −0.0891 | 0.076* | |
H9B | 0.8458 | 0.5159 | 0.0034 | 0.076* | |
C10 | 0.6301 (3) | 0.5836 (2) | 0.0625 (2) | 0.0587 (5) | |
H10A | 0.5437 | 0.5767 | 0.0496 | 0.070* | |
H10B | 0.6218 | 0.5528 | 0.1479 | 0.070* | |
C11 | 0.6407 (3) | 0.7155 (2) | 0.0237 (2) | 0.0674 (6) | |
H11A | 0.6528 | 0.7452 | −0.0623 | 0.081* | |
H11B | 0.7255 | 0.7224 | 0.0393 | 0.081* | |
C12 | 0.5120 (3) | 0.7959 (2) | 0.0858 (2) | 0.0614 (6) | |
H12A | 0.5273 | 0.8791 | 0.0573 | 0.074* | |
H12B | 0.4281 | 0.7947 | 0.0653 | 0.074* | |
N13 | 1.2428 (2) | 0.02022 (16) | −0.18237 (16) | 0.0552 (4) | |
C14 | 1.2164 (3) | 0.0507 (2) | −0.2987 (2) | 0.0667 (6) | |
H14A | 1.2272 | 0.1336 | −0.3434 | 0.080* | |
H14B | 1.1214 | 0.0409 | −0.2907 | 0.080* | |
C15 | 1.3319 (4) | −0.0414 (3) | −0.3587 (3) | 0.0991 (10) | |
H15A | 1.2992 | −0.1168 | −0.3392 | 0.119* | |
H15B | 1.3592 | −0.0091 | −0.4453 | 0.119* | |
C16 | 1.4544 (4) | −0.0610 (3) | −0.3079 (3) | 0.0953 (10) | |
H16A | 1.5076 | 0.0046 | −0.3481 | 0.114* | |
H16B | 1.5191 | −0.1378 | −0.3150 | 0.114* | |
C17 | 1.3810 (3) | −0.0620 (2) | −0.1779 (2) | 0.0691 (7) | |
H17A | 1.3679 | −0.1434 | −0.1293 | 0.083* | |
H17B | 1.4355 | −0.0321 | −0.1456 | 0.083* | |
C18 | 1.0701 (4) | 0.1167 (3) | 0.3233 (3) | 0.0889 (9) | |
H18A | 1.0764 | 0.2007 | 0.2853 | 0.133* | |
H18B | 1.0982 | 0.0911 | 0.3964 | 0.133* | |
H18C | 0.9732 | 0.1072 | 0.3411 | 0.133* | |
N1' | 0.5874 (2) | 0.75833 (17) | 0.26537 (17) | 0.0562 (4) | |
N2' | 0.48609 (19) | 0.75607 (15) | 0.21614 (16) | 0.0523 (4) | |
C3' | 0.3732 (2) | 0.71212 (19) | 0.2958 (2) | 0.0523 (5) | |
H3' | 0.2939 | 0.7030 | 0.2799 | 0.063* | |
C3'A | 0.3978 (2) | 0.68271 (17) | 0.40750 (19) | 0.0464 (4) | |
C4' | 0.3308 (2) | 0.63228 (18) | 0.5291 (2) | 0.0486 (5) | |
N5' | 0.39478 (17) | 0.61134 (15) | 0.61292 (16) | 0.0508 (4) | |
C6' | 0.5269 (2) | 0.64238 (18) | 0.57572 (19) | 0.0489 (5) | |
C7'A | 0.5325 (2) | 0.71265 (17) | 0.38228 (19) | 0.0475 (5) | |
N7' | 0.59894 (19) | 0.69349 (16) | 0.46833 (16) | 0.0530 (4) | |
C19 | 0.1303 (3) | 0.5208 (3) | 0.7209 (3) | 0.0829 (8) | |
H19A | 0.2090 | 0.4544 | 0.7327 | 0.124* | |
H19B | 0.0434 | 0.4900 | 0.7480 | 0.124* | |
H19C | 0.1219 | 0.5763 | 0.7658 | 0.124* | |
C20 | 0.7739 (3) | 0.6421 (3) | 0.6226 (3) | 0.0867 (9) | |
H20A | 0.8269 | 0.5947 | 0.5659 | 0.130* | |
H20B | 0.8250 | 0.6260 | 0.6809 | 0.130* | |
H20C | 0.7622 | 0.7271 | 0.5812 | 0.130* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0764 (4) | 0.0638 (4) | 0.0609 (4) | −0.0052 (3) | −0.0309 (3) | −0.0081 (3) |
S2 | 0.0382 (3) | 0.0921 (5) | 0.0735 (4) | −0.0197 (3) | −0.0125 (3) | −0.0184 (3) |
S3 | 0.0592 (4) | 0.0803 (4) | 0.0587 (3) | −0.0253 (3) | −0.0242 (3) | −0.0044 (3) |
N1 | 0.0493 (10) | 0.0643 (11) | 0.0561 (11) | −0.0028 (9) | −0.0177 (8) | −0.0190 (9) |
N2 | 0.0626 (12) | 0.0816 (14) | 0.0638 (12) | −0.0034 (11) | −0.0293 (10) | −0.0217 (11) |
C3 | 0.0617 (14) | 0.0739 (15) | 0.0570 (13) | −0.0101 (12) | −0.0208 (11) | −0.0211 (11) |
C3A | 0.0462 (11) | 0.0539 (12) | 0.0504 (11) | −0.0161 (9) | −0.0115 (9) | −0.0130 (9) |
C4 | 0.0495 (11) | 0.0458 (11) | 0.0522 (12) | −0.0187 (9) | −0.0088 (9) | −0.0097 (9) |
N5 | 0.0510 (10) | 0.0470 (9) | 0.0531 (10) | −0.0108 (8) | −0.0126 (8) | −0.0089 (8) |
C6 | 0.0502 (11) | 0.0456 (11) | 0.0518 (11) | −0.0169 (9) | −0.0152 (9) | −0.0044 (9) |
N7 | 0.0492 (10) | 0.0528 (10) | 0.0487 (10) | −0.0108 (8) | −0.0120 (8) | −0.0110 (8) |
C7A | 0.0408 (10) | 0.0513 (11) | 0.0525 (11) | −0.0121 (9) | −0.0120 (9) | −0.0109 (9) |
C8 | 0.0460 (12) | 0.0664 (14) | 0.0607 (13) | −0.0051 (10) | −0.0127 (10) | −0.0164 (11) |
C9 | 0.0639 (14) | 0.0651 (14) | 0.0531 (13) | −0.0096 (11) | −0.0107 (11) | −0.0121 (11) |
C10 | 0.0580 (13) | 0.0583 (13) | 0.0570 (13) | −0.0153 (10) | −0.0152 (10) | −0.0084 (10) |
C11 | 0.0776 (16) | 0.0595 (14) | 0.0526 (13) | −0.0140 (12) | −0.0123 (12) | −0.0037 (10) |
C12 | 0.0740 (15) | 0.0499 (12) | 0.0544 (13) | −0.0051 (11) | −0.0245 (11) | −0.0046 (10) |
N13 | 0.0583 (11) | 0.0529 (10) | 0.0528 (10) | −0.0149 (8) | −0.0072 (8) | −0.0163 (8) |
C14 | 0.0711 (16) | 0.0722 (15) | 0.0566 (14) | −0.0236 (13) | −0.0063 (12) | −0.0198 (12) |
C15 | 0.098 (2) | 0.122 (3) | 0.080 (2) | −0.017 (2) | −0.0018 (17) | −0.0565 (19) |
C16 | 0.086 (2) | 0.093 (2) | 0.090 (2) | 0.0027 (17) | −0.0020 (17) | −0.0413 (17) |
C17 | 0.0706 (16) | 0.0509 (13) | 0.0736 (16) | −0.0043 (11) | −0.0089 (13) | −0.0180 (11) |
C18 | 0.109 (2) | 0.096 (2) | 0.0755 (18) | −0.0083 (18) | −0.0412 (17) | −0.0342 (16) |
N1' | 0.0545 (10) | 0.0570 (10) | 0.0579 (11) | −0.0184 (8) | −0.0180 (9) | −0.0067 (8) |
N2' | 0.0535 (10) | 0.0469 (9) | 0.0540 (10) | −0.0047 (8) | −0.0202 (8) | −0.0087 (8) |
C3' | 0.0436 (11) | 0.0489 (11) | 0.0655 (13) | −0.0020 (9) | −0.0218 (10) | −0.0149 (10) |
C3'A | 0.0371 (10) | 0.0436 (10) | 0.0579 (12) | −0.0033 (8) | −0.0157 (9) | −0.0135 (9) |
C4' | 0.0350 (10) | 0.0460 (11) | 0.0623 (13) | −0.0033 (8) | −0.0128 (9) | −0.0153 (9) |
N5' | 0.0405 (9) | 0.0526 (10) | 0.0576 (10) | −0.0107 (7) | −0.0135 (8) | −0.0108 (8) |
C6' | 0.0432 (11) | 0.0465 (11) | 0.0584 (12) | −0.0100 (9) | −0.0164 (9) | −0.0118 (9) |
C7'A | 0.0452 (11) | 0.0414 (10) | 0.0549 (12) | −0.0105 (8) | −0.0145 (9) | −0.0084 (9) |
N7' | 0.0481 (10) | 0.0583 (10) | 0.0556 (10) | −0.0202 (8) | −0.0171 (8) | −0.0071 (8) |
C19 | 0.0522 (14) | 0.105 (2) | 0.0798 (18) | −0.0300 (14) | −0.0112 (13) | −0.0035 (15) |
C20 | 0.0601 (16) | 0.129 (3) | 0.0815 (18) | −0.0391 (16) | −0.0287 (14) | −0.0141 (17) |
Geometric parameters (Å, º) top
S1—C6 | 1.765 (2) | N13—C14 | 1.450 (3) |
S1—C18 | 1.788 (3) | N13—C17 | 1.466 (3) |
S2—C4' | 1.745 (2) | C14—C15 | 1.524 (4) |
S2—C19 | 1.790 (3) | C14—H14A | 0.9700 |
S3—C6' | 1.758 (2) | C14—H14B | 0.9700 |
S3—C20 | 1.788 (3) | C15—C16 | 1.498 (5) |
N1—C7A | 1.352 (3) | C15—H15A | 0.9700 |
N1—N2 | 1.367 (3) | C15—H15B | 0.9700 |
N1—C8 | 1.444 (3) | C16—C17 | 1.511 (4) |
N2—C3 | 1.313 (3) | C16—H16A | 0.9700 |
C3—C3A | 1.410 (3) | C16—H16B | 0.9700 |
C3—H3 | 0.9300 | C17—H17A | 0.9700 |
C3A—C7A | 1.389 (3) | C17—H17B | 0.9700 |
C3A—C4 | 1.425 (3) | C18—H18A | 0.9600 |
C4—N13 | 1.332 (3) | C18—H18B | 0.9600 |
C4—N5 | 1.348 (3) | C18—H18C | 0.9600 |
N5—C6 | 1.337 (3) | N1'—C7'A | 1.331 (3) |
C6—N7 | 1.324 (3) | N1'—N2' | 1.365 (2) |
N7—C7A | 1.354 (3) | N2'—C3' | 1.331 (3) |
C8—C9 | 1.503 (3) | C3'—C3'A | 1.388 (3) |
C8—H8A | 0.9700 | C3'—H3' | 0.9300 |
C8—H8B | 0.9700 | C3'A—C4' | 1.412 (3) |
C9—C10 | 1.524 (3) | C3'A—C7'A | 1.413 (3) |
C9—H9A | 0.9700 | C4'—N5' | 1.315 (3) |
C9—H9B | 0.9700 | N5'—C6' | 1.373 (3) |
C10—C11 | 1.502 (3) | C6'—N7' | 1.304 (3) |
C10—H10A | 0.9700 | C7'A—N7' | 1.362 (3) |
C10—H10B | 0.9700 | C19—H19A | 0.9600 |
C11—C12 | 1.512 (3) | C19—H19B | 0.9600 |
C11—H11A | 0.9700 | C19—H19C | 0.9600 |
C11—H11B | 0.9700 | C20—H20A | 0.9600 |
C12—N2' | 1.460 (3) | C20—H20B | 0.9600 |
C12—H12A | 0.9700 | C20—H20C | 0.9600 |
C12—H12B | 0.9700 | | |
| | | |
C6—S1—C18 | 102.28 (12) | N13—C14—H14B | 111.3 |
C4'—S2—C19 | 102.53 (12) | C15—C14—H14B | 111.3 |
C6'—S3—C20 | 101.60 (12) | H14A—C14—H14B | 109.2 |
C7A—N1—N2 | 111.00 (18) | C16—C15—C14 | 103.9 (2) |
C7A—N1—C8 | 129.12 (19) | C16—C15—H15A | 111.0 |
N2—N1—C8 | 119.86 (18) | C14—C15—H15A | 111.0 |
C3—N2—N1 | 105.73 (18) | C16—C15—H15B | 111.0 |
N2—C3—C3A | 111.8 (2) | C14—C15—H15B | 111.0 |
N2—C3—H3 | 124.1 | H15A—C15—H15B | 109.0 |
C3A—C3—H3 | 124.1 | C15—C16—C17 | 103.1 (3) |
C7A—C3A—C3 | 104.15 (19) | C15—C16—H16A | 111.2 |
C7A—C3A—C4 | 115.58 (19) | C17—C16—H16A | 111.2 |
C3—C3A—C4 | 140.3 (2) | C15—C16—H16B | 111.2 |
N13—C4—N5 | 117.85 (19) | C17—C16—H16B | 111.2 |
N13—C4—C3A | 123.5 (2) | H16A—C16—H16B | 109.1 |
N5—C4—C3A | 118.63 (19) | N13—C17—C16 | 103.3 (2) |
C6—N5—C4 | 118.02 (18) | N13—C17—H17A | 111.1 |
N7—C6—N5 | 130.12 (19) | C16—C17—H17A | 111.1 |
N7—C6—S1 | 118.93 (16) | N13—C17—H17B | 111.1 |
N5—C6—S1 | 110.95 (15) | C16—C17—H17B | 111.1 |
C6—N7—C7A | 110.54 (18) | H17A—C17—H17B | 109.1 |
N1—C7A—N7 | 125.61 (19) | S1—C18—H18A | 109.5 |
N1—C7A—C3A | 107.28 (18) | S1—C18—H18B | 109.5 |
N7—C7A—C3A | 127.10 (19) | H18A—C18—H18B | 109.5 |
N1—C8—C9 | 112.86 (19) | S1—C18—H18C | 109.5 |
N1—C8—H8A | 109.0 | H18A—C18—H18C | 109.5 |
C9—C8—H8A | 109.0 | H18B—C18—H18C | 109.5 |
N1—C8—H8B | 109.0 | C7'A—N1'—N2' | 103.07 (17) |
C9—C8—H8B | 109.0 | C3'—N2'—N1' | 114.19 (18) |
H8A—C8—H8B | 107.8 | C3'—N2'—C12 | 126.7 (2) |
C8—C9—C10 | 111.3 (2) | N1'—N2'—C12 | 119.04 (19) |
C8—C9—H9A | 109.4 | N2'—C3'—C3'A | 106.11 (18) |
C10—C9—H9A | 109.4 | N2'—C3'—H3' | 126.9 |
C8—C9—H9B | 109.4 | C3'A—C3'—H3' | 126.9 |
C10—C9—H9B | 109.4 | C3'—C3'A—C4' | 138.83 (19) |
H9A—C9—H9B | 108.0 | C3'—C3'A—C7'A | 104.44 (18) |
C11—C10—C9 | 113.2 (2) | C4'—C3'A—C7'A | 116.71 (18) |
C11—C10—H10A | 108.9 | N5'—C4'—C3'A | 120.64 (18) |
C9—C10—H10A | 108.9 | N5'—C4'—S2 | 121.23 (16) |
C11—C10—H10B | 108.9 | C3'A—C4'—S2 | 118.13 (16) |
C9—C10—H10B | 108.9 | C4'—N5'—C6' | 116.62 (18) |
H10A—C10—H10B | 107.8 | N7'—C6'—N5' | 129.55 (19) |
C10—C11—C12 | 114.0 (2) | N7'—C6'—S3 | 119.40 (15) |
C10—C11—H11A | 108.8 | N5'—C6'—S3 | 111.04 (15) |
C12—C11—H11A | 108.8 | N1'—C7'A—N7' | 124.50 (19) |
C10—C11—H11B | 108.8 | N1'—C7'A—C3'A | 112.18 (18) |
C12—C11—H11B | 108.8 | N7'—C7'A—C3'A | 123.30 (19) |
H11A—C11—H11B | 107.7 | C6'—N7'—C7'A | 113.09 (17) |
N2'—C12—C11 | 111.95 (18) | S2—C19—H19A | 109.5 |
N2'—C12—H12A | 109.2 | S2—C19—H19B | 109.5 |
C11—C12—H12A | 109.2 | H19A—C19—H19B | 109.5 |
N2'—C12—H12B | 109.2 | S2—C19—H19C | 109.5 |
C11—C12—H12B | 109.2 | H19A—C19—H19C | 109.5 |
H12A—C12—H12B | 107.9 | H19B—C19—H19C | 109.5 |
C4—N13—C14 | 124.47 (19) | S3—C20—H20A | 109.5 |
C4—N13—C17 | 122.7 (2) | S3—C20—H20B | 109.5 |
C14—N13—C17 | 112.16 (18) | H20A—C20—H20B | 109.5 |
N13—C14—C15 | 102.5 (2) | S3—C20—H20C | 109.5 |
N13—C14—H14A | 111.3 | H20A—C20—H20C | 109.5 |
C15—C14—H14A | 111.3 | H20B—C20—H20C | 109.5 |
| | | |
C7A—N1—N2—C3 | 0.0 (3) | C4—N13—C14—C15 | −176.3 (2) |
C8—N1—N2—C3 | 179.0 (2) | C17—N13—C14—C15 | 12.7 (3) |
N1—N2—C3—C3A | 0.1 (3) | N13—C14—C15—C16 | −32.0 (3) |
N2—C3—C3A—C7A | −0.3 (3) | C14—C15—C16—C17 | 39.4 (3) |
N2—C3—C3A—C4 | −179.4 (2) | C4—N13—C17—C16 | −159.9 (2) |
C7A—C3A—C4—N13 | 179.70 (19) | C14—N13—C17—C16 | 11.3 (3) |
C3—C3A—C4—N13 | −1.2 (4) | C15—C16—C17—N13 | −31.0 (3) |
C7A—C3A—C4—N5 | 0.0 (3) | C7'A—N1'—N2'—C3' | 0.1 (2) |
C3—C3A—C4—N5 | 179.1 (3) | C7'A—N1'—N2'—C12 | −177.63 (18) |
N13—C4—N5—C6 | −179.47 (18) | C11—C12—N2'—C3' | −114.4 (2) |
C3A—C4—N5—C6 | 0.3 (3) | C11—C12—N2'—N1' | 63.1 (3) |
C4—N5—C6—N7 | −0.2 (3) | N1'—N2'—C3'—C3'A | 0.3 (2) |
C4—N5—C6—S1 | 179.53 (14) | C12—N2'—C3'—C3'A | 177.88 (19) |
C18—S1—C6—N7 | −4.5 (2) | N2'—C3'—C3'A—C4' | −178.8 (2) |
C18—S1—C6—N5 | 175.72 (17) | N2'—C3'—C3'A—C7'A | −0.6 (2) |
N5—C6—N7—C7A | −0.2 (3) | C3'—C3'A—C4'—N5' | 175.9 (2) |
S1—C6—N7—C7A | −179.87 (14) | C7'A—C3'A—C4'—N5' | −2.1 (3) |
N2—N1—C7A—N7 | 179.8 (2) | C3'—C3'A—C4'—S2 | −4.1 (4) |
C8—N1—C7A—N7 | 1.0 (4) | C7'A—C3'A—C4'—S2 | 177.90 (14) |
N2—N1—C7A—C3A | −0.2 (2) | C19—S2—C4'—N5' | −7.1 (2) |
C8—N1—C7A—C3A | −179.1 (2) | C19—S2—C4'—C3'A | 172.93 (18) |
C6—N7—C7A—N1 | −179.6 (2) | C3'A—C4'—N5'—C6' | 0.8 (3) |
C6—N7—C7A—C3A | 0.4 (3) | S2—C4'—N5'—C6' | −179.20 (15) |
C3—C3A—C7A—N1 | 0.3 (2) | C4'—N5'—C6'—N7' | 2.1 (3) |
C4—C3A—C7A—N1 | 179.69 (17) | C4'—N5'—C6'—S3 | −177.00 (15) |
C3—C3A—C7A—N7 | −179.8 (2) | C20—S3—C6'—N7' | −2.9 (2) |
C4—C3A—C7A—N7 | −0.4 (3) | C20—S3—C6'—N5' | 176.28 (17) |
C7A—N1—C8—C9 | 113.2 (3) | N2'—N1'—C7'A—N7' | 177.85 (19) |
N2—N1—C8—C9 | −65.6 (3) | N2'—N1'—C7'A—C3'A | −0.5 (2) |
N1—C8—C9—C10 | 170.11 (19) | C3'—C3'A—C7'A—N1' | 0.7 (2) |
C8—C9—C10—C11 | 175.6 (2) | C4'—C3'A—C7'A—N1' | 179.39 (18) |
C9—C10—C11—C12 | 177.9 (2) | C3'—C3'A—C7'A—N7' | −177.67 (19) |
C10—C11—C12—N2' | 58.0 (3) | C4'—C3'A—C7'A—N7' | 1.0 (3) |
N5—C4—N13—C14 | −179.7 (2) | N5'—C6'—N7'—C7'A | −3.1 (3) |
C3A—C4—N13—C14 | 0.6 (3) | S3—C6'—N7'—C7'A | 175.91 (15) |
N5—C4—N13—C17 | −9.6 (3) | N1'—C7'A—N7'—C6' | −176.8 (2) |
C3A—C4—N13—C17 | 170.6 (2) | C3'A—C7'A—N7'—C6' | 1.4 (3) |
(III) 6-methylsulfanyl-1-{5-[6-methylsulfanyl-4-(pyrrolidin-1-yl)-2
H- pyrazolo[3,4-
d]pyrimidin-2-yl]pentyl}-4-(pyrrolidin-1-yl)-1
H- pyrazolo[3,4-
d]pyrimidine
top
Crystal data top
C25H34N10S2 | F(000) = 1144 |
Mr = 538.74 | Dx = 1.324 Mg m−3 |
Triclinic, P1 | Melting point = 431–433 K |
a = 10.006 (1) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 15.283 (1) Å | Cell parameters from 41 reflections |
c = 18.411 (2) Å | θ = 5.3–12.5° |
α = 74.164 (7)° | µ = 0.23 mm−1 |
β = 89.970 (9)° | T = 293 K |
γ = 86.359 (9)° | Block, colourless |
V = 2702.7 (4) Å3 | 0.38 × 0.33 × 0.23 mm |
Z = 4 | |
Data collection top
Bruker P4 diffractometer | Rint = 0.018 |
Radiation source: fine-focus sealed tube | θmax = 26.0°, θmin = 2.0° |
Graphite monochromator | h = −1→12 |
θ/2θ scans | k = −18→18 |
12443 measured reflections | l = −22→22 |
10538 independent reflections | 3 standard reflections every 97 reflections |
6258 reflections with I > 2σ(I) | intensity decay: none |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.150 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0618P)2 + 0.688P] where P = (Fo2 + 2Fc2)/3 |
10538 reflections | (Δ/σ)max = 0.001 |
671 parameters | Δρmax = 0.27 e Å−3 |
10 restraints | Δρmin = −0.30 e Å−3 |
Crystal data top
C25H34N10S2 | γ = 86.359 (9)° |
Mr = 538.74 | V = 2702.7 (4) Å3 |
Triclinic, P1 | Z = 4 |
a = 10.006 (1) Å | Mo Kα radiation |
b = 15.283 (1) Å | µ = 0.23 mm−1 |
c = 18.411 (2) Å | T = 293 K |
α = 74.164 (7)° | 0.38 × 0.33 × 0.23 mm |
β = 89.970 (9)° | |
Data collection top
Bruker P4 diffractometer | Rint = 0.018 |
12443 measured reflections | 3 standard reflections every 97 reflections |
10538 independent reflections | intensity decay: none |
6258 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.057 | 10 restraints |
wR(F2) = 0.150 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.27 e Å−3 |
10538 reflections | Δρmin = −0.30 e Å−3 |
671 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.79844 (9) | 0.87520 (7) | 0.57598 (5) | 0.0779 (3) | |
S2 | 0.40059 (8) | 0.63881 (6) | 0.25424 (5) | 0.0677 (2) | |
S1' | 0.22124 (9) | 0.86701 (7) | 0.07883 (5) | 0.0757 (3) | |
S2' | 0.66919 (9) | 0.64044 (6) | −0.24553 (5) | 0.0673 (2) | |
N1 | 0.3827 (3) | 0.88458 (17) | 0.73087 (14) | 0.0587 (6) | |
N2 | 0.3591 (3) | 0.87786 (18) | 0.80541 (15) | 0.0655 (7) | |
C3 | 0.4777 (3) | 0.8722 (2) | 0.83693 (18) | 0.0632 (8) | |
H3 | 0.4917 | 0.8667 | 0.8880 | 0.076* | |
C3A | 0.5820 (3) | 0.87551 (19) | 0.78485 (16) | 0.0517 (7) | |
C4 | 0.7231 (3) | 0.87579 (19) | 0.78103 (16) | 0.0518 (7) | |
N5 | 0.7824 (2) | 0.87691 (17) | 0.71474 (13) | 0.0577 (6) | |
C6 | 0.7031 (3) | 0.8807 (2) | 0.65598 (16) | 0.0573 (8) | |
N7 | 0.5709 (3) | 0.88628 (17) | 0.64923 (13) | 0.0575 (6) | |
C7A | 0.5144 (3) | 0.88284 (19) | 0.71745 (16) | 0.0532 (7) | |
C8 | 0.2718 (3) | 0.8988 (2) | 0.67762 (19) | 0.0678 (9) | |
H8A | 0.3055 | 0.9194 | 0.6268 | 0.081* | |
H8B | 0.2099 | 0.9466 | 0.6856 | 0.081* | |
C9 | 0.1970 (3) | 0.8137 (2) | 0.68443 (17) | 0.0624 (8) | |
H9A | 0.1622 | 0.7937 | 0.7350 | 0.075* | |
H9B | 0.1213 | 0.8287 | 0.6493 | 0.075* | |
C10 | 0.2829 (3) | 0.7361 (2) | 0.66867 (17) | 0.0594 (8) | |
H10A | 0.3568 | 0.7197 | 0.7049 | 0.071* | |
H10B | 0.3202 | 0.7568 | 0.6187 | 0.071* | |
C11 | 0.2074 (3) | 0.6522 (2) | 0.67275 (17) | 0.0624 (8) | |
H11A | 0.1652 | 0.6339 | 0.7215 | 0.075* | |
H11B | 0.1369 | 0.6678 | 0.6344 | 0.075* | |
C12 | 0.2935 (3) | 0.5724 (2) | 0.66191 (17) | 0.0651 (9) | |
H12A | 0.3646 | 0.5569 | 0.6999 | 0.078* | |
H12B | 0.2395 | 0.5202 | 0.6695 | 0.078* | |
N13 | 0.8036 (2) | 0.87547 (17) | 0.83920 (13) | 0.0587 (6) | |
C14 | 0.9489 (3) | 0.8810 (3) | 0.83260 (18) | 0.0715 (9) | |
H14A | 0.9718 | 0.9252 | 0.7863 | 0.086* | |
H14B | 0.9933 | 0.8222 | 0.8341 | 0.086* | |
C15 | 0.9854 (4) | 0.9111 (3) | 0.90070 (19) | 0.0838 (11) | |
H15A | 1.0764 | 0.8897 | 0.9176 | 0.101* | |
H15B | 0.9772 | 0.9771 | 0.8896 | 0.101* | |
C16 | 0.8865 (4) | 0.8687 (3) | 0.95936 (19) | 0.0818 (11) | |
H16A | 0.8756 | 0.9024 | 0.9969 | 0.098* | |
H16B | 0.9153 | 0.8059 | 0.9845 | 0.098* | |
C17 | 0.7576 (3) | 0.8741 (2) | 0.91473 (16) | 0.0611 (8) | |
H17A | 0.7063 | 0.8216 | 0.9358 | 0.073* | |
H17B | 0.7029 | 0.9291 | 0.9139 | 0.073* | |
C18 | 0.6715 (4) | 0.8806 (3) | 0.50790 (19) | 0.0931 (12) | |
H18A | 0.6133 | 0.8321 | 0.5266 | 0.140* | |
H18B | 0.7115 | 0.8745 | 0.4620 | 0.140* | |
H18C | 0.6206 | 0.9381 | 0.4982 | 0.140* | |
N19 | 0.7191 (2) | 0.63988 (17) | 0.45192 (14) | 0.0594 (7) | |
C20 | 0.8222 (3) | 0.6542 (3) | 0.3940 (2) | 0.0736 (10) | |
H20A | 0.8203 | 0.7176 | 0.3651 | 0.088* | |
H20B | 0.8098 | 0.6169 | 0.3598 | 0.088* | |
C21 | 0.9492 (4) | 0.6262 (3) | 0.4374 (2) | 0.0983 (13) | |
H21A | 1.0204 | 0.6630 | 0.4127 | 0.118* | |
H21B | 0.9750 | 0.5626 | 0.4420 | 0.118* | |
C22 | 0.9235 (3) | 0.6404 (3) | 0.5128 (3) | 0.0941 (13) | |
H22A | 0.9400 | 0.7023 | 0.5128 | 0.113* | |
H22B | 0.9807 | 0.5984 | 0.5511 | 0.113* | |
C23 | 0.7763 (3) | 0.6224 (2) | 0.52791 (18) | 0.0657 (9) | |
H23A | 0.7663 | 0.5600 | 0.5571 | 0.079* | |
H23B | 0.7346 | 0.6635 | 0.5545 | 0.079* | |
C24 | 0.2240 (3) | 0.6280 (3) | 0.24791 (19) | 0.0809 (11) | |
H24A | 0.1987 | 0.5770 | 0.2877 | 0.121* | |
H24B | 0.2024 | 0.6186 | 0.1999 | 0.121* | |
H24C | 0.1765 | 0.6826 | 0.2528 | 0.121* | |
N1' | 0.2720 (2) | 0.59602 (16) | 0.52662 (13) | 0.0550 (6) | |
N2' | 0.3524 (2) | 0.59044 (16) | 0.58748 (13) | 0.0540 (6) | |
C3' | 0.4799 (3) | 0.60173 (19) | 0.57092 (17) | 0.0534 (7) | |
H3' | 0.5495 | 0.6000 | 0.6049 | 0.064* | |
C3'A | 0.4904 (3) | 0.61657 (18) | 0.49343 (16) | 0.0481 (7) | |
C4' | 0.5903 (3) | 0.63189 (18) | 0.43694 (17) | 0.0500 (7) | |
N5' | 0.5552 (2) | 0.63897 (16) | 0.36525 (13) | 0.0526 (6) | |
C6' | 0.4244 (3) | 0.63145 (19) | 0.35078 (16) | 0.0499 (7) | |
N7' | 0.3215 (2) | 0.61973 (16) | 0.39587 (13) | 0.0522 (6) | |
C7'A | 0.3580 (3) | 0.61184 (18) | 0.46885 (16) | 0.0468 (7) | |
N1'' | 0.6316 (3) | 0.89594 (17) | 0.22882 (14) | 0.0595 (6) | |
N2'' | 0.6566 (3) | 0.89108 (18) | 0.30313 (15) | 0.0670 (7) | |
C3'' | 0.5395 (3) | 0.8809 (2) | 0.33569 (18) | 0.0633 (8) | |
H3'' | 0.5267 | 0.8761 | 0.3866 | 0.076* | |
C3''A | 0.4357 (3) | 0.87793 (19) | 0.28502 (15) | 0.0509 (7) | |
C4'' | 0.2951 (3) | 0.87252 (19) | 0.28286 (16) | 0.0521 (7) | |
N5'' | 0.2359 (2) | 0.87115 (17) | 0.21733 (13) | 0.0565 (6) | |
C6'' | 0.3143 (3) | 0.8769 (2) | 0.15763 (16) | 0.0559 (7) | |
N7'' | 0.4440 (3) | 0.88800 (16) | 0.14956 (13) | 0.0572 (6) | |
C7''A | 0.5001 (3) | 0.88792 (18) | 0.21698 (16) | 0.0524 (7) | |
C8'' | 0.7383 (3) | 0.9125 (2) | 0.17478 (19) | 0.0685 (9) | |
H8''1 | 0.7886 | 0.9617 | 0.1822 | 0.082* | |
H8''2 | 0.6995 | 0.9321 | 0.1242 | 0.082* | |
C9'' | 0.8330 (3) | 0.8296 (2) | 0.18127 (18) | 0.0637 (8) | |
H9''1 | 0.8726 | 0.8104 | 0.2317 | 0.076* | |
H9''2 | 0.9048 | 0.8459 | 0.1457 | 0.076* | |
C10'' | 0.7642 (3) | 0.7504 (2) | 0.16600 (17) | 0.0587 (8) | |
H10C | 0.6948 | 0.7326 | 0.2029 | 0.070* | |
H10D | 0.7214 | 0.7705 | 0.1165 | 0.070* | |
C11'' | 0.8588 (3) | 0.6688 (2) | 0.16921 (17) | 0.0628 (8) | |
H11C | 0.9246 | 0.6857 | 0.1300 | 0.075* | |
H11D | 0.9062 | 0.6515 | 0.2175 | 0.075* | |
C12'' | 0.7903 (3) | 0.5878 (2) | 0.15941 (16) | 0.0638 (8) | |
H12C | 0.8559 | 0.5366 | 0.1665 | 0.077* | |
H12D | 0.7236 | 0.5714 | 0.1982 | 0.077* | |
N13'' | 0.2162 (2) | 0.86998 (17) | 0.34131 (12) | 0.0588 (6) | |
C14'' | 0.0696 (3) | 0.8746 (3) | 0.33597 (16) | 0.0744 (10) | |
H14C | 0.0374 | 0.8158 | 0.3367 | 0.089* | |
H14D | 0.0366 | 0.9195 | 0.2904 | 0.089* | |
C15'' | 0.0285 (3) | 0.9023 (3) | 0.40508 (18) | 0.0949 (13) | |
H15C | −0.0564 | 0.8781 | 0.4231 | 0.114* | |
H15D | 0.0196 | 0.9682 | 0.3944 | 0.114* | |
C16'' | 0.1368 (3) | 0.8635 (3) | 0.46188 (16) | 0.0922 (12) | |
H16C | 0.1223 | 0.8008 | 0.4885 | 0.111* | |
H16D | 0.1412 | 0.8987 | 0.4983 | 0.111* | |
C17'' | 0.2641 (3) | 0.8689 (2) | 0.41670 (14) | 0.0632 (8) | |
H17C | 0.3083 | 0.9240 | 0.4155 | 0.076* | |
H17D | 0.3258 | 0.8164 | 0.4375 | 0.076* | |
C18'' | 0.3480 (4) | 0.8746 (3) | 0.01009 (19) | 0.0897 (12) | |
H18D | 0.3830 | 0.9338 | −0.0012 | 0.135* | |
H18E | 0.3107 | 0.8654 | −0.0351 | 0.135* | |
H18F | 0.4189 | 0.8288 | 0.0294 | 0.135* | |
N19'' | 0.3472 (2) | 0.62778 (17) | −0.04580 (12) | 0.0551 (6) | |
C20'' | 0.2422 (3) | 0.6412 (2) | −0.10351 (15) | 0.0653 (8) | |
H20C | 0.2548 | 0.5967 | −0.1322 | 0.078* | |
H20D | 0.2414 | 0.7019 | −0.1379 | 0.078* | |
C21'' | 0.1168 (3) | 0.6285 (4) | −0.0605 (2) | 0.1119 (16) | |
H21C | 0.0501 | 0.6769 | −0.0837 | 0.134* | |
H21D | 0.0821 | 0.5708 | −0.0607 | 0.134* | |
C22'' | 0.1445 (3) | 0.6300 (3) | 0.0169 (2) | 0.1040 (14) | |
H22C | 0.1007 | 0.5814 | 0.0521 | 0.125* | |
H22D | 0.1110 | 0.6877 | 0.0246 | 0.125* | |
C23'' | 0.2935 (3) | 0.6171 (2) | 0.02968 (15) | 0.0613 (8) | |
H23C | 0.3253 | 0.6627 | 0.0520 | 0.074* | |
H23D | 0.3189 | 0.5571 | 0.0625 | 0.074* | |
C24'' | 0.8481 (3) | 0.6398 (3) | −0.2520 (2) | 0.0798 (10) | |
H24D | 0.8781 | 0.6939 | −0.2419 | 0.120* | |
H24E | 0.8741 | 0.6383 | −0.3018 | 0.120* | |
H24F | 0.8879 | 0.5870 | −0.2157 | 0.120* | |
N31 | 0.8028 (2) | 0.61659 (16) | 0.02331 (13) | 0.0547 (6) | |
N32 | 0.7254 (2) | 0.60432 (16) | 0.08548 (13) | 0.0529 (6) | |
C33 | 0.5956 (3) | 0.60545 (19) | 0.07115 (16) | 0.0536 (7) | |
H33 | 0.5274 | 0.5987 | 0.1062 | 0.064* | |
C33A | 0.5805 (3) | 0.61871 (18) | −0.00640 (15) | 0.0465 (6) | |
C34 | 0.4779 (3) | 0.62670 (18) | −0.06196 (16) | 0.0474 (7) | |
N35 | 0.5123 (2) | 0.63286 (15) | −0.13327 (13) | 0.0508 (6) | |
C36 | 0.6439 (3) | 0.63520 (18) | −0.14966 (15) | 0.0488 (7) | |
N37 | 0.7482 (2) | 0.63378 (16) | −0.10631 (13) | 0.0512 (6) | |
C37A | 0.7139 (3) | 0.62423 (18) | −0.03266 (16) | 0.0464 (7) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0660 (6) | 0.1225 (8) | 0.0528 (5) | −0.0065 (5) | 0.0097 (4) | −0.0367 (5) |
S2 | 0.0585 (5) | 0.0933 (6) | 0.0551 (5) | −0.0057 (4) | −0.0020 (4) | −0.0267 (4) |
S1' | 0.0655 (6) | 0.1150 (8) | 0.0533 (5) | −0.0040 (5) | −0.0025 (4) | −0.0348 (5) |
S2' | 0.0600 (5) | 0.0923 (6) | 0.0544 (5) | −0.0052 (4) | 0.0047 (4) | −0.0280 (4) |
N1 | 0.0557 (16) | 0.0634 (16) | 0.0595 (16) | 0.0001 (12) | 0.0012 (13) | −0.0222 (13) |
N2 | 0.0613 (18) | 0.0769 (19) | 0.0623 (17) | 0.0001 (14) | 0.0111 (14) | −0.0268 (14) |
C3 | 0.067 (2) | 0.075 (2) | 0.0524 (18) | −0.0038 (17) | 0.0090 (16) | −0.0250 (16) |
C3A | 0.0576 (19) | 0.0495 (17) | 0.0507 (17) | −0.0037 (14) | 0.0073 (14) | −0.0184 (13) |
C4 | 0.0588 (19) | 0.0488 (17) | 0.0490 (17) | −0.0049 (14) | 0.0043 (14) | −0.0151 (13) |
N5 | 0.0588 (16) | 0.0708 (17) | 0.0457 (14) | −0.0072 (13) | 0.0059 (12) | −0.0192 (12) |
C6 | 0.061 (2) | 0.062 (2) | 0.0492 (17) | −0.0050 (15) | 0.0083 (15) | −0.0162 (14) |
N7 | 0.0604 (17) | 0.0655 (16) | 0.0481 (14) | −0.0012 (13) | 0.0030 (12) | −0.0187 (12) |
C7A | 0.0550 (19) | 0.0463 (17) | 0.0591 (19) | −0.0004 (14) | 0.0065 (15) | −0.0167 (14) |
C8 | 0.057 (2) | 0.073 (2) | 0.075 (2) | 0.0088 (17) | 0.0003 (17) | −0.0247 (18) |
C9 | 0.0463 (17) | 0.084 (2) | 0.0575 (18) | 0.0027 (16) | 0.0028 (14) | −0.0218 (16) |
C10 | 0.0471 (17) | 0.076 (2) | 0.0587 (18) | −0.0057 (15) | 0.0050 (14) | −0.0236 (16) |
C11 | 0.0557 (19) | 0.086 (2) | 0.0489 (17) | −0.0170 (17) | 0.0088 (14) | −0.0218 (16) |
C12 | 0.075 (2) | 0.069 (2) | 0.0510 (18) | −0.0205 (18) | 0.0084 (16) | −0.0119 (15) |
N13 | 0.0579 (16) | 0.0728 (17) | 0.0482 (14) | −0.0073 (13) | 0.0034 (12) | −0.0208 (12) |
C14 | 0.059 (2) | 0.093 (3) | 0.061 (2) | −0.0052 (18) | 0.0022 (16) | −0.0167 (18) |
C15 | 0.069 (2) | 0.113 (3) | 0.072 (2) | −0.009 (2) | −0.0071 (19) | −0.029 (2) |
C16 | 0.078 (2) | 0.109 (3) | 0.057 (2) | −0.002 (2) | −0.0026 (18) | −0.022 (2) |
C17 | 0.072 (2) | 0.063 (2) | 0.0490 (17) | −0.0048 (16) | 0.0037 (15) | −0.0164 (15) |
C18 | 0.075 (3) | 0.153 (4) | 0.055 (2) | −0.001 (2) | 0.0025 (18) | −0.038 (2) |
N19 | 0.0426 (14) | 0.0691 (17) | 0.0689 (17) | −0.0097 (12) | −0.0048 (12) | −0.0216 (13) |
C20 | 0.0497 (19) | 0.086 (2) | 0.089 (2) | −0.0122 (17) | 0.0109 (18) | −0.029 (2) |
C21 | 0.047 (2) | 0.125 (4) | 0.112 (3) | −0.007 (2) | −0.003 (2) | −0.015 (3) |
C22 | 0.048 (2) | 0.126 (3) | 0.124 (3) | −0.004 (2) | −0.018 (2) | −0.060 (3) |
C23 | 0.0538 (19) | 0.071 (2) | 0.075 (2) | −0.0082 (16) | −0.0120 (16) | −0.0236 (17) |
C24 | 0.064 (2) | 0.115 (3) | 0.067 (2) | −0.014 (2) | −0.0149 (17) | −0.029 (2) |
N1' | 0.0478 (14) | 0.0639 (16) | 0.0542 (15) | −0.0081 (12) | 0.0005 (12) | −0.0167 (12) |
N2' | 0.0581 (16) | 0.0560 (15) | 0.0498 (14) | −0.0100 (12) | 0.0008 (12) | −0.0163 (11) |
C3' | 0.0511 (18) | 0.0506 (17) | 0.0598 (19) | −0.0064 (14) | −0.0075 (14) | −0.0165 (14) |
C3'A | 0.0465 (16) | 0.0446 (16) | 0.0560 (17) | −0.0025 (13) | −0.0054 (13) | −0.0183 (13) |
C4' | 0.0403 (16) | 0.0467 (17) | 0.0647 (19) | −0.0029 (12) | −0.0039 (14) | −0.0180 (14) |
N5' | 0.0419 (14) | 0.0584 (15) | 0.0594 (15) | −0.0040 (11) | −0.0006 (11) | −0.0190 (12) |
C6' | 0.0459 (17) | 0.0517 (17) | 0.0541 (17) | −0.0011 (13) | −0.0025 (14) | −0.0180 (13) |
N7' | 0.0416 (13) | 0.0599 (15) | 0.0572 (15) | −0.0025 (11) | −0.0059 (12) | −0.0197 (12) |
C7'A | 0.0422 (16) | 0.0466 (16) | 0.0535 (17) | −0.0034 (12) | −0.0039 (13) | −0.0169 (13) |
N1'' | 0.0585 (17) | 0.0623 (16) | 0.0617 (16) | −0.0110 (13) | 0.0043 (13) | −0.0224 (13) |
N2'' | 0.0641 (18) | 0.0769 (19) | 0.0677 (18) | −0.0112 (14) | −0.0051 (14) | −0.0314 (14) |
C3'' | 0.064 (2) | 0.075 (2) | 0.0566 (19) | −0.0089 (17) | 0.0014 (17) | −0.0264 (16) |
C3''A | 0.0556 (18) | 0.0511 (17) | 0.0483 (16) | −0.0029 (14) | −0.0028 (14) | −0.0174 (13) |
C4'' | 0.0574 (19) | 0.0501 (17) | 0.0487 (17) | −0.0015 (14) | −0.0026 (14) | −0.0139 (13) |
N5'' | 0.0577 (15) | 0.0661 (16) | 0.0482 (14) | −0.0020 (12) | 0.0009 (12) | −0.0204 (12) |
C6'' | 0.058 (2) | 0.0594 (19) | 0.0516 (17) | 0.0008 (15) | −0.0044 (15) | −0.0180 (14) |
N7'' | 0.0620 (17) | 0.0608 (16) | 0.0490 (14) | −0.0031 (13) | 0.0004 (12) | −0.0152 (12) |
C7''A | 0.0549 (19) | 0.0444 (17) | 0.0590 (19) | −0.0039 (14) | −0.0029 (15) | −0.0157 (14) |
C8'' | 0.063 (2) | 0.070 (2) | 0.076 (2) | −0.0176 (18) | 0.0111 (17) | −0.0236 (17) |
C9'' | 0.0495 (18) | 0.085 (2) | 0.0623 (19) | −0.0136 (17) | 0.0048 (15) | −0.0285 (17) |
C10'' | 0.0467 (17) | 0.074 (2) | 0.0593 (18) | −0.0047 (15) | −0.0014 (14) | −0.0246 (16) |
C11'' | 0.0526 (18) | 0.086 (2) | 0.0532 (17) | 0.0029 (17) | −0.0043 (14) | −0.0256 (16) |
C12'' | 0.065 (2) | 0.074 (2) | 0.0500 (17) | 0.0028 (17) | −0.0055 (15) | −0.0143 (15) |
N13'' | 0.0552 (16) | 0.0755 (18) | 0.0467 (14) | −0.0047 (13) | 0.0006 (12) | −0.0184 (12) |
C14'' | 0.058 (2) | 0.104 (3) | 0.060 (2) | −0.0131 (19) | 0.0042 (16) | −0.0203 (19) |
C15'' | 0.069 (2) | 0.148 (4) | 0.072 (2) | −0.013 (2) | 0.016 (2) | −0.036 (2) |
C16'' | 0.083 (3) | 0.141 (4) | 0.057 (2) | −0.031 (3) | 0.014 (2) | −0.029 (2) |
C17'' | 0.067 (2) | 0.076 (2) | 0.0475 (17) | −0.0073 (17) | −0.0016 (15) | −0.0181 (15) |
C18'' | 0.078 (3) | 0.138 (4) | 0.057 (2) | −0.008 (2) | 0.0040 (18) | −0.035 (2) |
N19'' | 0.0376 (13) | 0.0659 (16) | 0.0611 (15) | −0.0018 (11) | 0.0044 (11) | −0.0163 (12) |
C20'' | 0.0462 (18) | 0.072 (2) | 0.076 (2) | −0.0018 (15) | −0.0069 (16) | −0.0172 (17) |
C21'' | 0.043 (2) | 0.185 (5) | 0.097 (3) | 0.006 (2) | 0.005 (2) | −0.023 (3) |
C22'' | 0.043 (2) | 0.170 (4) | 0.115 (3) | −0.008 (2) | 0.016 (2) | −0.066 (3) |
C23'' | 0.0459 (17) | 0.067 (2) | 0.073 (2) | −0.0015 (15) | 0.0113 (15) | −0.0239 (17) |
C24'' | 0.063 (2) | 0.111 (3) | 0.070 (2) | −0.002 (2) | 0.0188 (17) | −0.033 (2) |
N31 | 0.0437 (14) | 0.0662 (16) | 0.0557 (15) | −0.0028 (12) | 0.0009 (12) | −0.0190 (12) |
N32 | 0.0516 (15) | 0.0580 (15) | 0.0498 (14) | −0.0018 (12) | −0.0007 (12) | −0.0161 (11) |
C33 | 0.0462 (18) | 0.0583 (18) | 0.0576 (18) | 0.0005 (14) | 0.0063 (14) | −0.0189 (14) |
C33A | 0.0429 (16) | 0.0448 (16) | 0.0522 (16) | −0.0007 (12) | 0.0050 (13) | −0.0146 (13) |
C34 | 0.0396 (16) | 0.0438 (16) | 0.0584 (18) | −0.0035 (12) | 0.0020 (13) | −0.0132 (13) |
N35 | 0.0448 (14) | 0.0555 (15) | 0.0524 (14) | −0.0032 (11) | 0.0025 (11) | −0.0151 (11) |
C36 | 0.0470 (17) | 0.0487 (17) | 0.0510 (16) | −0.0032 (13) | 0.0042 (14) | −0.0141 (13) |
N37 | 0.0430 (14) | 0.0634 (16) | 0.0487 (14) | −0.0037 (11) | 0.0050 (11) | −0.0176 (12) |
C37A | 0.0400 (15) | 0.0443 (16) | 0.0557 (17) | −0.0010 (12) | 0.0021 (13) | −0.0156 (13) |
Geometric parameters (Å, º) top
S1—C18 | 1.768 (4) | C4'—N5' | 1.340 (4) |
S1—C6 | 1.773 (3) | N5'—C6' | 1.354 (3) |
S2—C6' | 1.765 (3) | C6'—N7' | 1.312 (4) |
S2—C24 | 1.791 (3) | N7'—C7'A | 1.364 (3) |
S1'—C6'' | 1.770 (3) | N1''—C7''A | 1.352 (4) |
S1'—C18'' | 1.778 (4) | N1''—N2'' | 1.372 (3) |
S2'—C36 | 1.764 (3) | N1''—C8'' | 1.446 (4) |
S2'—C24'' | 1.794 (3) | N2''—C3'' | 1.314 (4) |
N1—C7A | 1.340 (4) | C3''—C3''A | 1.407 (4) |
N1—N2 | 1.369 (3) | C3''—H3'' | 0.9300 |
N1—C8 | 1.447 (4) | C3''A—C7''A | 1.384 (4) |
N2—C3 | 1.309 (4) | C3''A—C4'' | 1.416 (4) |
C3—C3A | 1.411 (4) | C4''—N13'' | 1.328 (3) |
C3—H3 | 0.9300 | C4''—N5'' | 1.350 (4) |
C3A—C7A | 1.388 (4) | N5''—C6'' | 1.336 (4) |
C3A—C4 | 1.413 (4) | C6''—N7'' | 1.322 (4) |
C4—N13 | 1.339 (4) | N7''—C7''A | 1.362 (4) |
C4—N5 | 1.353 (4) | C8''—C9'' | 1.512 (4) |
N5—C6 | 1.328 (4) | C8''—H8''1 | 0.9700 |
C6—N7 | 1.324 (4) | C8''—H8''2 | 0.9700 |
N7—C7A | 1.367 (4) | C9''—C10'' | 1.519 (4) |
C8—C9 | 1.518 (4) | C9''—H9''1 | 0.9700 |
C8—H8A | 0.9700 | C9''—H9''2 | 0.9700 |
C8—H8B | 0.9700 | C10''—C11'' | 1.505 (4) |
C9—C10 | 1.512 (4) | C10''—H10C | 0.9700 |
C9—H9A | 0.9700 | C10''—H10D | 0.9700 |
C9—H9B | 0.9700 | C11''—C12'' | 1.505 (4) |
C10—C11 | 1.513 (4) | C11''—H11C | 0.9700 |
C10—H10A | 0.9700 | C11''—H11D | 0.9700 |
C10—H10B | 0.9700 | C12''—N32 | 1.459 (4) |
C11—C12 | 1.505 (4) | C12''—H12C | 0.9700 |
C11—H11A | 0.9700 | C12''—H12D | 0.9700 |
C11—H11B | 0.9700 | N13''—C17'' | 1.464 (3) |
C12—N2' | 1.454 (4) | N13''—C14'' | 1.466 (3) |
C12—H12A | 0.9700 | C14''—C15'' | 1.496 (4) |
C12—H12B | 0.9700 | C14''—H14C | 0.9700 |
N13—C17 | 1.460 (4) | C14''—H14D | 0.9700 |
N13—C14 | 1.465 (4) | C15''—C16'' | 1.484 (4) |
C14—C15 | 1.501 (5) | C15''—H15C | 0.9700 |
C14—H14A | 0.9700 | C15''—H15D | 0.9700 |
C14—H14B | 0.9700 | C16''—C17'' | 1.515 (3) |
C15—C16 | 1.504 (5) | C16''—H16C | 0.9700 |
C15—H15A | 0.9700 | C16''—H16D | 0.9700 |
C15—H15B | 0.9700 | C17''—H17C | 0.9700 |
C16—C17 | 1.516 (4) | C17''—H17D | 0.9700 |
C16—H16A | 0.9700 | C18''—H18D | 0.9600 |
C16—H16B | 0.9700 | C18''—H18E | 0.9600 |
C17—H17A | 0.9700 | C18''—H18F | 0.9600 |
C17—H17B | 0.9700 | N19''—C34 | 1.341 (3) |
C18—H18A | 0.9600 | N19''—C23'' | 1.460 (3) |
C18—H18B | 0.9600 | N19''—C20'' | 1.459 (3) |
C18—H18C | 0.9600 | C20''—C21'' | 1.478 (4) |
N19—C4' | 1.338 (3) | C20''—H20C | 0.9700 |
N19—C23 | 1.460 (4) | C20''—H20D | 0.9700 |
N19—C20 | 1.466 (4) | C21''—C22'' | 1.457 (4) |
C20—C21 | 1.478 (5) | C21''—H21C | 0.9700 |
C20—H20A | 0.9700 | C21''—H21D | 0.9700 |
C20—H20B | 0.9700 | C22''—C23'' | 1.502 (3) |
C21—C22 | 1.483 (6) | C22''—H22C | 0.9700 |
C21—H21A | 0.9700 | C22''—H22D | 0.9700 |
C21—H21B | 0.9700 | C23''—H23C | 0.9700 |
C22—C23 | 1.528 (5) | C23''—H23D | 0.9700 |
C22—H22A | 0.9700 | C24''—H24D | 0.9600 |
C22—H22B | 0.9700 | C24''—H24E | 0.9600 |
C23—H23A | 0.9700 | C24''—H24F | 0.9600 |
C23—H23B | 0.9700 | N31—C37A | 1.338 (3) |
C24—H24A | 0.9600 | N31—N32 | 1.358 (3) |
C24—H24B | 0.9600 | N32—C33 | 1.324 (3) |
C24—H24C | 0.9600 | C33—C33A | 1.393 (4) |
N1'—C7'A | 1.347 (4) | C33—H33 | 0.9300 |
N1'—N2' | 1.360 (3) | C33A—C37A | 1.419 (4) |
N2'—C3' | 1.323 (4) | C33A—C34 | 1.426 (4) |
C3'—C3'A | 1.387 (4) | C34—N35 | 1.337 (3) |
C3'—H3' | 0.9300 | N35—C36 | 1.351 (3) |
C3'A—C7'A | 1.413 (4) | C36—N37 | 1.310 (3) |
C3'A—C4' | 1.425 (4) | N37—C37A | 1.370 (3) |
| | | |
C18—S1—C6 | 101.69 (17) | N1'—C7'A—C3'A | 111.9 (2) |
C6'—S2—C24 | 102.36 (15) | N7'—C7'A—C3'A | 124.3 (3) |
C6''—S1'—C18'' | 101.43 (16) | C7''A—N1''—N2'' | 110.7 (2) |
C36—S2'—C24'' | 102.25 (15) | C7''A—N1''—C8'' | 129.0 (3) |
C7A—N1—N2 | 111.0 (2) | N2''—N1''—C8'' | 120.2 (3) |
C7A—N1—C8 | 128.7 (3) | C3''—N2''—N1'' | 105.1 (2) |
N2—N1—C8 | 120.1 (3) | N2''—C3''—C3''A | 112.6 (3) |
C3—N2—N1 | 105.2 (2) | N2''—C3''—H3'' | 123.7 |
N2—C3—C3A | 112.5 (3) | C3''A—C3''—H3'' | 123.7 |
N2—C3—H3 | 123.8 | C7''A—C3''A—C3'' | 103.6 (3) |
C3A—C3—H3 | 123.8 | C7''A—C3''A—C4'' | 116.0 (3) |
C7A—C3A—C3 | 103.2 (3) | C3''—C3''A—C4'' | 140.3 (3) |
C7A—C3A—C4 | 116.1 (3) | N13''—C4''—N5'' | 117.2 (3) |
C3—C3A—C4 | 140.7 (3) | N13''—C4''—C3''A | 124.1 (3) |
N13—C4—N5 | 116.9 (3) | N5''—C4''—C3''A | 118.6 (3) |
N13—C4—C3A | 124.2 (3) | C6''—N5''—C4'' | 117.5 (3) |
N5—C4—C3A | 118.9 (3) | N7''—C6''—N5'' | 130.9 (3) |
C6—N5—C4 | 117.4 (3) | N7''—C6''—S1' | 118.1 (2) |
N7—C6—N5 | 131.0 (3) | N5''—C6''—S1' | 111.0 (2) |
N7—C6—S1 | 118.1 (2) | C6''—N7''—C7''A | 109.7 (2) |
N5—C6—S1 | 110.9 (2) | N1''—C7''A—N7'' | 125.0 (3) |
C6—N7—C7A | 110.0 (2) | N1''—C7''A—C3''A | 108.0 (2) |
N1—C7A—N7 | 125.5 (3) | N7''—C7''A—C3''A | 127.0 (3) |
N1—C7A—C3A | 108.1 (3) | N1''—C8''—C9'' | 113.0 (3) |
N7—C7A—C3A | 126.5 (3) | N1''—C8''—H8''1 | 109.0 |
N1—C8—C9 | 113.1 (3) | C9''—C8''—H8''1 | 109.0 |
N1—C8—H8A | 109.0 | N1''—C8''—H8''2 | 109.0 |
C9—C8—H8A | 109.0 | C9''—C8''—H8''2 | 109.0 |
N1—C8—H8B | 109.0 | H8''1—C8''—H8''2 | 107.8 |
C9—C8—H8B | 109.0 | C8''—C9''—C10'' | 112.7 (3) |
H8A—C8—H8B | 107.8 | C8''—C9''—H9''1 | 109.0 |
C10—C9—C8 | 113.4 (2) | C10''—C9''—H9''1 | 109.0 |
C10—C9—H9A | 108.9 | C8''—C9''—H9''2 | 109.0 |
C8—C9—H9A | 108.9 | C10''—C9''—H9''2 | 109.0 |
C10—C9—H9B | 108.9 | H9''1—C9''—H9''2 | 107.8 |
C8—C9—H9B | 108.9 | C11''—C10''—C9'' | 113.1 (2) |
H9A—C9—H9B | 107.7 | C11''—C10''—H10C | 109.0 |
C9—C10—C11 | 113.6 (3) | C9''—C10''—H10C | 109.0 |
C9—C10—H10A | 108.9 | C11''—C10''—H10D | 109.0 |
C11—C10—H10A | 108.9 | C9''—C10''—H10D | 109.0 |
C9—C10—H10B | 108.9 | H10C—C10''—H10D | 107.8 |
C11—C10—H10B | 108.9 | C12''—C11''—C10'' | 113.6 (3) |
H10A—C10—H10B | 107.7 | C12''—C11''—H11C | 108.9 |
C12—C11—C10 | 114.2 (3) | C10''—C11''—H11C | 108.9 |
C12—C11—H11A | 108.7 | C12''—C11''—H11D | 108.9 |
C10—C11—H11A | 108.7 | C10''—C11''—H11D | 108.9 |
C12—C11—H11B | 108.7 | H11C—C11''—H11D | 107.7 |
C10—C11—H11B | 108.7 | N32—C12''—C11'' | 113.2 (3) |
H11A—C11—H11B | 107.6 | N32—C12''—H12C | 108.9 |
N2'—C12—C11 | 113.0 (3) | C11''—C12''—H12C | 108.9 |
N2'—C12—H12A | 109.0 | N32—C12''—H12D | 108.9 |
C11—C12—H12A | 109.0 | C11''—C12''—H12D | 108.9 |
N2'—C12—H12B | 109.0 | H12C—C12''—H12D | 107.7 |
C11—C12—H12B | 109.0 | C4''—N13''—C17'' | 124.3 (2) |
H12A—C12—H12B | 107.8 | C4''—N13''—C14'' | 123.4 (2) |
C4—N13—C17 | 124.6 (3) | C17''—N13''—C14'' | 112.22 (19) |
C4—N13—C14 | 123.1 (2) | N13''—C14''—C15'' | 102.6 (2) |
C17—N13—C14 | 112.3 (2) | N13''—C14''—H14C | 111.2 |
N13—C14—C15 | 102.5 (3) | C15''—C14''—H14C | 111.2 |
N13—C14—H14A | 111.3 | N13''—C14''—H14D | 111.2 |
C15—C14—H14A | 111.3 | C15''—C14''—H14D | 111.2 |
N13—C14—H14B | 111.3 | H14C—C14''—H14D | 109.2 |
C15—C14—H14B | 111.3 | C14''—C15''—C16'' | 105.5 (3) |
H14A—C14—H14B | 109.2 | C14''—C15''—H15C | 110.6 |
C16—C15—C14 | 104.5 (3) | C16''—C15''—H15C | 110.6 |
C16—C15—H15A | 110.9 | C14''—C15''—H15D | 110.6 |
C14—C15—H15A | 110.9 | C16''—C15''—H15D | 110.6 |
C16—C15—H15B | 110.9 | H15C—C15''—H15D | 108.8 |
C14—C15—H15B | 110.9 | C15''—C16''—C17'' | 104.9 (2) |
H15A—C15—H15B | 108.9 | C15''—C16''—H16C | 110.8 |
C15—C16—C17 | 104.0 (3) | C17''—C16''—H16C | 110.8 |
C15—C16—H16A | 111.0 | C15''—C16''—H16D | 110.8 |
C17—C16—H16A | 111.0 | C17''—C16''—H16D | 110.8 |
C15—C16—H16B | 111.0 | H16C—C16''—H16D | 108.8 |
C17—C16—H16B | 111.0 | N13''—C17''—C16'' | 103.2 (2) |
H16A—C16—H16B | 109.0 | N13''—C17''—H17C | 111.1 |
N13—C17—C16 | 103.5 (3) | C16''—C17''—H17C | 111.1 |
N13—C17—H17A | 111.1 | N13''—C17''—H17D | 111.1 |
C16—C17—H17A | 111.1 | C16''—C17''—H17D | 111.1 |
N13—C17—H17B | 111.1 | H17C—C17''—H17D | 109.1 |
C16—C17—H17B | 111.1 | S1'—C18''—H18D | 109.5 |
H17A—C17—H17B | 109.0 | S1'—C18''—H18E | 109.5 |
S1—C18—H18A | 109.5 | H18D—C18''—H18E | 109.5 |
S1—C18—H18B | 109.5 | S1'—C18''—H18F | 109.5 |
H18A—C18—H18B | 109.5 | H18D—C18''—H18F | 109.5 |
S1—C18—H18C | 109.5 | H18E—C18''—H18F | 109.5 |
H18A—C18—H18C | 109.5 | C34—N19''—C23'' | 124.8 (2) |
H18B—C18—H18C | 109.5 | C34—N19''—C20'' | 122.6 (2) |
C4'—N19—C23 | 124.3 (3) | C23''—N19''—C20'' | 112.56 (18) |
C4'—N19—C20 | 123.0 (3) | N19''—C20''—C21'' | 104.3 (2) |
C23—N19—C20 | 112.2 (2) | N19''—C20''—H20C | 110.9 |
N19—C20—C21 | 104.0 (3) | C21''—C20''—H20C | 110.9 |
N19—C20—H20A | 110.9 | N19''—C20''—H20D | 110.9 |
C21—C20—H20A | 110.9 | C21''—C20''—H20D | 110.9 |
N19—C20—H20B | 110.9 | H20C—C20''—H20D | 108.9 |
C21—C20—H20B | 110.9 | C22''—C21''—C20'' | 109.0 (2) |
H20A—C20—H20B | 109.0 | C22''—C21''—H21C | 109.9 |
C20—C21—C22 | 105.9 (3) | C20''—C21''—H21C | 109.9 |
C20—C21—H21A | 110.5 | C22''—C21''—H21D | 109.9 |
C22—C21—H21A | 110.5 | C20''—C21''—H21D | 109.9 |
C20—C21—H21B | 110.5 | H21C—C21''—H21D | 108.3 |
C22—C21—H21B | 110.5 | C21''—C22''—C23'' | 107.8 (2) |
H21A—C21—H21B | 108.7 | C21''—C22''—H22C | 110.1 |
C21—C22—C23 | 105.4 (3) | C23''—C22''—H22C | 110.1 |
C21—C22—H22A | 110.7 | C21''—C22''—H22D | 110.1 |
C23—C22—H22A | 110.7 | C23''—C22''—H22D | 110.1 |
C21—C22—H22B | 110.7 | H22C—C22''—H22D | 108.5 |
C23—C22—H22B | 110.7 | N19''—C23''—C22'' | 104.1 (2) |
H22A—C22—H22B | 108.8 | N19''—C23''—H23C | 110.9 |
N19—C23—C22 | 102.7 (3) | C22''—C23''—H23C | 110.9 |
N19—C23—H23A | 111.2 | N19''—C23''—H23D | 110.9 |
C22—C23—H23A | 111.2 | C22''—C23''—H23D | 110.9 |
N19—C23—H23B | 111.2 | H23C—C23''—H23D | 109.0 |
C22—C23—H23B | 111.2 | S2'—C24''—H24D | 109.5 |
H23A—C23—H23B | 109.1 | S2'—C24''—H24E | 109.5 |
S2—C24—H24A | 109.5 | H24D—C24''—H24E | 109.5 |
S2—C24—H24B | 109.5 | S2'—C24''—H24F | 109.5 |
H24A—C24—H24B | 109.5 | H24D—C24''—H24F | 109.5 |
S2—C24—H24C | 109.5 | H24E—C24''—H24F | 109.5 |
H24A—C24—H24C | 109.5 | C37A—N31—N32 | 103.3 (2) |
H24B—C24—H24C | 109.5 | C33—N32—N31 | 114.1 (2) |
C7'A—N1'—N2' | 103.1 (2) | C33—N32—C12'' | 126.9 (3) |
C3'—N2'—N1' | 114.0 (2) | N31—N32—C12'' | 118.9 (2) |
C3'—N2'—C12 | 127.0 (3) | N32—C33—C33A | 107.0 (2) |
N1'—N2'—C12 | 119.0 (2) | N32—C33—H33 | 126.5 |
N2'—C3'—C3'A | 107.1 (2) | C33A—C33—H33 | 126.5 |
N2'—C3'—H3' | 126.4 | C33—C33A—C37A | 103.5 (2) |
C3'A—C3'—H3' | 126.4 | C33—C33A—C34 | 140.1 (3) |
C3'—C3'A—C7'A | 103.9 (3) | C37A—C33A—C34 | 116.4 (2) |
C3'—C3'A—C4' | 139.4 (3) | N35—C34—N19'' | 118.1 (2) |
C7'A—C3'A—C4' | 116.6 (3) | N35—C34—C33A | 119.1 (2) |
N19—C4'—N5' | 117.8 (3) | N19''—C34—C33A | 122.8 (3) |
N19—C4'—C3'A | 123.0 (3) | C34—N35—C36 | 117.7 (2) |
N5'—C4'—C3'A | 119.2 (2) | N37—C36—N35 | 130.3 (3) |
C4'—N5'—C6' | 117.2 (2) | N37—C36—S2' | 118.8 (2) |
N7'—C6'—N5' | 130.6 (3) | N35—C36—S2' | 110.9 (2) |
N7'—C6'—S2 | 119.5 (2) | C36—N37—C37A | 112.2 (2) |
N5'—C6'—S2 | 109.9 (2) | N31—C37A—N37 | 123.8 (2) |
C6'—N7'—C7'A | 112.1 (2) | N31—C37A—C33A | 112.1 (2) |
N1'—C7'A—N7' | 123.8 (2) | N37—C37A—C33A | 124.1 (2) |
| | | |
C7A—N1—N2—C3 | 0.1 (3) | C7''A—N1''—N2''—C3'' | −0.5 (3) |
C8—N1—N2—C3 | −175.4 (3) | C8''—N1''—N2''—C3'' | 176.5 (3) |
N1—N2—C3—C3A | 0.3 (4) | N1''—N2''—C3''—C3''A | 0.5 (4) |
N2—C3—C3A—C7A | −0.6 (4) | N2''—C3''—C3''A—C7''A | −0.3 (4) |
N2—C3—C3A—C4 | 177.4 (4) | N2''—C3''—C3''A—C4'' | −176.6 (4) |
C7A—C3A—C4—N13 | 175.3 (3) | C7''A—C3''A—C4''—N13'' | −174.6 (3) |
C3—C3A—C4—N13 | −2.5 (6) | C3''—C3''A—C4''—N13'' | 1.4 (6) |
C7A—C3A—C4—N5 | −4.3 (4) | C7''A—C3''A—C4''—N5'' | 4.4 (4) |
C3—C3A—C4—N5 | 177.8 (3) | C3''—C3''A—C4''—N5'' | −179.7 (3) |
N13—C4—N5—C6 | −177.5 (3) | N13''—C4''—N5''—C6'' | 177.7 (3) |
C3A—C4—N5—C6 | 2.1 (4) | C3''A—C4''—N5''—C6'' | −1.4 (4) |
C4—N5—C6—N7 | 2.2 (5) | C4''—N5''—C6''—N7'' | −3.3 (5) |
C4—N5—C6—S1 | −176.7 (2) | C4''—N5''—C6''—S1' | 176.4 (2) |
C18—S1—C6—N7 | 0.5 (3) | C18''—S1'—C6''—N7'' | 0.8 (3) |
C18—S1—C6—N5 | 179.6 (2) | C18''—S1'—C6''—N5'' | −178.9 (2) |
N5—C6—N7—C7A | −3.5 (5) | N5''—C6''—N7''—C7''A | 3.9 (5) |
S1—C6—N7—C7A | 175.4 (2) | S1'—C6''—N7''—C7''A | −175.8 (2) |
N2—N1—C7A—N7 | 178.5 (3) | N2''—N1''—C7''A—N7'' | −178.5 (3) |
C8—N1—C7A—N7 | −6.4 (5) | C8''—N1''—C7''A—N7'' | 4.9 (5) |
N2—N1—C7A—C3A | −0.5 (3) | N2''—N1''—C7''A—C3''A | 0.3 (3) |
C8—N1—C7A—C3A | 174.5 (3) | C8''—N1''—C7''A—C3''A | −176.3 (3) |
C6—N7—C7A—N1 | −178.3 (3) | C6''—N7''—C7''A—N1'' | 178.6 (3) |
C6—N7—C7A—C3A | 0.6 (4) | C6''—N7''—C7''A—C3''A | 0.1 (4) |
C3—C3A—C7A—N1 | 0.7 (3) | C3''—C3''A—C7''A—N1'' | 0.0 (3) |
C4—C3A—C7A—N1 | −177.9 (2) | C4''—C3''A—C7''A—N1'' | 177.3 (2) |
C3—C3A—C7A—N7 | −178.4 (3) | C3''—C3''A—C7''A—N7'' | 178.7 (3) |
C4—C3A—C7A—N7 | 3.0 (4) | C4''—C3''A—C7''A—N7'' | −3.9 (4) |
C7A—N1—C8—C9 | 110.2 (3) | C7''A—N1''—C8''—C9'' | −107.7 (4) |
N2—N1—C8—C9 | −75.1 (3) | N2''—N1''—C8''—C9'' | 75.9 (4) |
N1—C8—C9—C10 | −61.8 (4) | N1''—C8''—C9''—C10'' | 61.9 (4) |
C8—C9—C10—C11 | −178.0 (3) | C8''—C9''—C10''—C11'' | 177.7 (3) |
C9—C10—C11—C12 | −176.4 (3) | C9''—C10''—C11''—C12'' | 176.1 (3) |
C10—C11—C12—N2' | −63.4 (3) | C10''—C11''—C12''—N32 | 63.6 (4) |
N5—C4—N13—C17 | −179.9 (3) | N5''—C4''—N13''—C17'' | 178.6 (3) |
C3A—C4—N13—C17 | 0.5 (5) | C3''A—C4''—N13''—C17'' | −2.5 (5) |
N5—C4—N13—C14 | 3.2 (4) | N5''—C4''—N13''—C14'' | −6.0 (4) |
C3A—C4—N13—C14 | −176.4 (3) | C3''A—C4''—N13''—C14'' | 173.0 (3) |
C4—N13—C14—C15 | 160.9 (3) | C4''—N13''—C14''—C15'' | −160.8 (3) |
C17—N13—C14—C15 | −16.4 (4) | C17''—N13''—C14''—C15'' | 15.1 (4) |
N13—C14—C15—C16 | 32.3 (4) | N13''—C14''—C15''—C16'' | −30.3 (4) |
C14—C15—C16—C17 | −36.8 (4) | C14''—C15''—C16''—C17'' | 34.6 (4) |
C4—N13—C17—C16 | 176.8 (3) | C4''—N13''—C17''—C16'' | −178.6 (3) |
C14—N13—C17—C16 | −6.1 (4) | C14''—N13''—C17''—C16'' | 5.5 (4) |
C15—C16—C17—N13 | 26.1 (4) | C15''—C16''—C17''—N13'' | −24.3 (4) |
C4'—N19—C20—C21 | −160.3 (3) | C34—N19''—C20''—C21'' | 174.7 (3) |
C23—N19—C20—C21 | 11.4 (4) | C23''—N19''—C20''—C21'' | −6.1 (4) |
N19—C20—C21—C22 | −26.6 (4) | N19''—C20''—C21''—C22'' | 13.3 (5) |
C20—C21—C22—C23 | 32.1 (5) | C20''—C21''—C22''—C23'' | −15.7 (5) |
C4'—N19—C23—C22 | 179.5 (3) | C34—N19''—C23''—C22'' | 176.1 (3) |
C20—N19—C23—C22 | 7.9 (4) | C20''—N19''—C23''—C22'' | −3.2 (4) |
C21—C22—C23—N19 | −24.2 (4) | C21''—C22''—C23''—N19'' | 11.4 (5) |
C7'A—N1'—N2'—C3' | 0.1 (3) | C37A—N31—N32—C33 | −1.0 (3) |
C7'A—N1'—N2'—C12 | −179.3 (2) | C37A—N31—N32—C12'' | 176.4 (2) |
C11—C12—N2'—C3' | 109.3 (3) | C11''—C12''—N32—C33 | −115.7 (3) |
C11—C12—N2'—N1' | −71.4 (3) | C11''—C12''—N32—N31 | 67.2 (3) |
N1'—N2'—C3'—C3'A | 0.2 (3) | N31—N32—C33—C33A | 0.5 (3) |
C12—N2'—C3'—C3'A | 179.6 (3) | C12''—N32—C33—C33A | −176.8 (3) |
N2'—C3'—C3'A—C7'A | −0.4 (3) | N32—C33—C33A—C37A | 0.3 (3) |
N2'—C3'—C3'A—C4' | −178.6 (3) | N32—C33—C33A—C34 | 179.5 (3) |
C23—N19—C4'—N5' | −171.9 (3) | C23''—N19''—C34—N35 | 176.8 (3) |
C20—N19—C4'—N5' | −1.2 (4) | C20''—N19''—C34—N35 | −4.0 (4) |
C23—N19—C4'—C3'A | 8.3 (4) | C23''—N19''—C34—C33A | −2.8 (4) |
C20—N19—C4'—C3'A | 179.0 (3) | C20''—N19''—C34—C33A | 176.4 (3) |
C3'—C3'A—C4'—N19 | −3.4 (5) | C33—C33A—C34—N35 | −174.9 (3) |
C7'A—C3'A—C4'—N19 | 178.5 (3) | C37A—C33A—C34—N35 | 4.2 (4) |
C3'—C3'A—C4'—N5' | 176.7 (3) | C33—C33A—C34—N19'' | 4.7 (5) |
C7'A—C3'A—C4'—N5' | −1.4 (4) | C37A—C33A—C34—N19'' | −176.2 (3) |
N19—C4'—N5'—C6' | −179.5 (2) | N19''—C34—N35—C36 | 177.5 (2) |
C3'A—C4'—N5'—C6' | 0.3 (4) | C33A—C34—N35—C36 | −2.8 (4) |
C4'—N5'—C6'—N7' | 1.5 (5) | C34—N35—C36—N37 | −1.2 (4) |
C4'—N5'—C6'—S2 | −178.0 (2) | C34—N35—C36—S2' | 178.5 (2) |
C24—S2—C6'—N7' | 0.7 (3) | C24''—S2'—C36—N37 | 1.2 (3) |
C24—S2—C6'—N5' | −179.7 (2) | C24''—S2'—C36—N35 | −178.6 (2) |
N5'—C6'—N7'—C7'A | −2.0 (4) | N35—C36—N37—C37A | 3.3 (4) |
S2—C6'—N7'—C7'A | 177.55 (19) | S2'—C36—N37—C37A | −176.38 (19) |
N2'—N1'—C7'A—N7' | 178.0 (2) | N32—N31—C37A—N37 | −177.1 (2) |
N2'—N1'—C7'A—C3'A | −0.3 (3) | N32—N31—C37A—C33A | 1.2 (3) |
C6'—N7'—C7'A—N1' | −177.5 (3) | C36—N37—C37A—N31 | 176.7 (3) |
C6'—N7'—C7'A—C3'A | 0.6 (4) | C36—N37—C37A—C33A | −1.4 (4) |
C3'—C3'A—C7'A—N1' | 0.5 (3) | C33—C33A—C37A—N31 | −0.9 (3) |
C4'—C3'A—C7'A—N1' | 179.2 (2) | C34—C33A—C37A—N31 | 179.6 (2) |
C3'—C3'A—C7'A—N7' | −177.8 (3) | C33—C33A—C37A—N37 | 177.4 (3) |
C4'—C3'A—C7'A—N7' | 0.9 (4) | C34—C33A—C37A—N37 | −2.0 (4) |
Experimental details
| (II) | (III) |
Crystal data |
Chemical formula | C22H29N9S3 | C25H34N10S2 |
Mr | 515.72 | 538.74 |
Crystal system, space group | Triclinic, P1 | Triclinic, P1 |
Temperature (K) | 293 | 293 |
a, b, c (Å) | 10.1195 (8), 11.865 (1), 12.271 (1) | 10.006 (1), 15.283 (1), 18.411 (2) |
α, β, γ (°) | 70.563 (7), 70.092 (8), 73.452 (7) | 74.164 (7), 89.970 (9), 86.359 (9) |
V (Å3) | 1281.7 (2) | 2702.7 (4) |
Z | 2 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.32 | 0.23 |
Crystal size (mm) | 0.44 × 0.30 × 0.22 | 0.38 × 0.33 × 0.23 |
|
Data collection |
Diffractometer | Bruker P4 diffractometer | Bruker P4 diffractometer |
Absorption correction | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5878, 4980, 3921 | 12443, 10538, 6258 |
Rint | 0.018 | 0.018 |
(sin θ/λ)max (Å−1) | 0.617 | 0.617 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.119, 1.03 | 0.057, 0.150, 1.02 |
No. of reflections | 4980 | 10538 |
No. of parameters | 310 | 671 |
No. of restraints | 0 | 10 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.38, −0.34 | 0.27, −0.30 |
Selected torsion angles (º) for (II) topC7A—N1—C8—C9 | 113.2 (3) | C10—C11—C12—N2' | 58.0 (3) |
N2—N1—C8—C9 | −65.6 (3) | C7'A—N1'—N2'—C12 | −177.63 (18) |
N1—C8—C9—C10 | 170.11 (19) | C11—C12—N2'—C3' | −114.4 (2) |
C8—C9—C10—C11 | 175.6 (2) | C11—C12—N2'—N1' | 63.1 (3) |
C9—C10—C11—C12 | 177.9 (2) | C12—N2'—C3'—C3'A | 177.88 (19) |
Selected torsion angles (º) for (III) topC7A—N1—C8—C9 | 110.2 (3) | C7''A—N1''—C8''—C9'' | −107.7 (4) |
N2—N1—C8—C9 | −75.1 (3) | N2''—N1''—C8''—C9'' | 75.9 (4) |
N1—C8—C9—C10 | −61.8 (4) | N1''—C8''—C9''—C10'' | 61.9 (4) |
C8—C9—C10—C11 | −178.0 (3) | C8''—C9''—C10''—C11'' | 177.7 (3) |
C9—C10—C11—C12 | −176.4 (3) | C9''—C10''—C11''—C12'' | 176.1 (3) |
C10—C11—C12—N2' | −63.4 (3) | C10''—C11''—C12''—N32 | 63.6 (4) |
C7'A—N1'—N2'—C12 | −179.3 (2) | C37A—N31—N32—C12'' | 176.4 (2) |
C11—C12—N2'—C3' | 109.3 (3) | C11''—C12''—N32—C33 | −115.7 (3) |
C11—C12—N2'—N1' | −71.4 (3) | C11''—C12''—N32—N31 | 67.2 (3) |
C12—N2'—C3'—C3'A | 179.6 (3) | C12''—N32—C33—C33A | −176.8 (3) |
Interactions between aromatic moieties are known to play an important role in chemistry (Tsuzuki et al., 2002; Hunter et al., 2001) and biology. They play a significant role in molecular recognition, stabilization of DNA/RNA structures (Hobza & Sponer, 1999) and crystal engineering (Desiraju, 1995). Use of a polymethylene, and especially a trimethylene (propylene) linker for studying intramolecular π–π interactions was pioneered by Leonard (Browne et al., 1968) and early work has been reviewed by Leonard (1979).
In 1995, we reported the first synthesis (Avasthi et al., 1995) and crystal structure determination (Biswas et al., 1995) of a trimethylene-linked molecule based on the pyrazolo[3,4-d]pyrimidine core, which is isomeric with the biologically important purine system. The robustness of the U-motif formed due to intramolecular stacking has been further demonstrated by crystal structure determinations of other closely related propylene-linked compounds (Maulik et al., 1998; Avasthi, Aswal & Maulik, 2001; Avasthi, Rawat et al., 2001). Interestingly, no intramolecular stacking is observed when the trimethylene linker is replaced by an ethylene (Avasthi, Rawat et al., 2001) or tetramethylene linker (Maulik et al., 2000). Importantly, bis-compounds involving ethylene, trimethylene, tetramethylene and pentamethylene linkers based on the pyrazolo[3,4-d]pyrimidine core show varying and unusual degrees of upfield shifts in their high-resolution (400 MHz) 1H NMR spectra when compared with those of monomeric compounds (Garg et al., 1989). These observations indicate the possibility of intramolecular stacking in solution (Avasthi et al., 1995). Here, we report the structures of two pentamethylene-linked flexible molecules, 1-{5-[4,6-bis(methylsulfanyl)-2H-pyrazolo[3,4-d]pyrimidin-2-yl]pentyl}- 6-methylsulfanyl-4-(pyrrolidin-1-yl)-1H-pyrazolo[3,4-d]pyrimidine, (II), and 6-methylsulfanyl-1-{5-[6-methylsulfanyl-4-(pyrrolidin-1-yl)-2H- pyrazolo[3,4-d]pyrimidin-2-yl]pentyl}-4-(pyrrolidin-1-yl)-1H- pyrazolo[3,4-d]pyrimidine, (III), based on the same pyrazolo[3,4-d]pyrimidine core. Although many attempts have been made to crystallize the parent compound, 4,6-dimethylthio-1-[5-(4,6-dimethylthio-2H-pyrazolo-[3,4-d]pyrimidin-2-yl)- pentyl-1H-pyrazolo[3,4-d]pyrimidine, (I) (Avasthi et al., 1995), none of these proved successful. \sch
The crystal structure of (II) (Fig. 1) does not show any intramolecular stacking [N1···N2' 6.656 (3) Å]. The C—C—C angles in the five-atom linker bridge range between 111.3 (2) and 114.0 (2)°. The planar pyrazolo[3,4-d]pyrimidine rings are twisted [dihedral angle 62.82 (4)°] Interestingly, this twist allows intermolecular stacking (Fig. 2) between the pyrazolo[3,4-d]pyrimidine rings related by the symmetry operation (1 − x, 1 − y, 1 − z) about the body centre of the cell, with an interplanar separation of 3.534 (2) Å in a `parallel-displaced' orientation, the rings being parallel by symmetry. In addition, the other pyrazolo[3,4-d]pyrimidine ring, carrying a pyrrolidino group, similarly interacts with a neighbouring molecule, related by the symmetry operation (2 − x, −y, −z), at an interplanar distance of 3.512 (2) Å (Fig. 2). These two stacking interactions link the molecules into chains running parallel to [100].
The molecular structure and conformation of (III), which differs from (II) in having an additional pyrrolidino group, rather than a thiomethyl group, at position C4', is shown in Fig. 3. The planar pyrazolo[3,4-d]pyrimidine rings are closer to coplanarity [dihedral angles 8.3 (1) and 5.70 (4)° for the two molecules of the asymmetric unit]. Again, the crystal structure does not show any intramolecular stacking [N1···N2' 5.824 (3) and 5.797 (4) Å for the two molecules of the asymmetric unit]. The C—C—C angles in the five-atom linker range from 112.7 (3) to 113.6 (3)° for one molecule and from 113.0 (3) to 114.2 (3)° for the other. However, intermolecular stacking due to aromatic π–π interactions is still present, with the two molecules in the asymmetric unit stacking (Fig. 4) through partial overlap of their pyrazolo[3,4-d]pyrimidine rings. The average intermolecular spacing is 3.506 (4) Å and the minimum atom-atom distance is 3.580 (4) Å for N5'-C3''. In addition, there is also a face-to-face overlap of the pyrazolo[3,4-d]pyrimidine rings related by (1 − x, 1 − y, 1 − z), with an interplanar separation of 3.430 (2) Å; the rings are parallel by symmetry (Fig. 5). Thus, the crystal structures of (II) and (III) are stabilized mainly by aromatic π–π interactions.