In the crystal structure of the title compound, C
6H
7NO
2, symmetry-related molecules are linked by O—H
O hydrogen bonds to form centrosymmetric dimers. Adjacent dimers are linked by O—H
N hydrogen bonds to form a ribbon-like structure extending in the
c direction. The ribbons are in turn linked by a C—H
O hydrogen bond to form a two-dimensional slab-like structure extending in the
bc plane.
Supporting information
CCDC reference: 627364
Key indicators
- Single-crystal X-ray study
- T = 153 K
- Mean (C-C) = 0.002 Å
- R factor = 0.036
- wR factor = 0.104
- Data-to-parameter ratio = 17.7
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT152_ALERT_1_C Supplied and Calc Volume s.u. Inconsistent ..... ?
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
1 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
0 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: X-AREA (Stoe & Cie, 2005); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97.
Pyridin-4-ylmethanediol
top
Crystal data top
C6H7NO2 | Z = 2 |
Mr = 125.13 | F(000) = 132 |
Triclinic, P1 | Dx = 1.442 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.3197 (11) Å | Cell parameters from 3912 reflections |
b = 6.9904 (11) Å | θ = 2.9–29.6° |
c = 7.5711 (13) Å | µ = 0.11 mm−1 |
α = 84.764 (13)° | T = 153 K |
β = 69.546 (13)° | Block, colourless |
γ = 67.036 (12)° | 0.45 × 0.40 × 0.35 mm |
V = 288.15 (8) Å3 | |
Data collection top
Stoe IPDS-2 diffractometer | 1368 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.030 |
Graphite monochromator | θmax = 29.5°, θmin = 2.9° |
Detector resolution: 6.67 pixels mm-1 | h = −8→8 |
φ and ω scans | k = −9→9 |
3890 measured reflections | l = −9→10 |
1591 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.104 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0578P)2 + 0.0448P] where P = (Fo2 + 2Fc2)/3 |
1591 reflections | (Δ/σ)max < 0.001 |
90 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
Special details top
Geometry. Bond distances, angles etc. have been calculated using the rounded
fractional coordinates. All su's are estimated from the variances of the
(full) variance-covariance matrix. The cell e.s.d.'s are taken into account in
the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.79077 (14) | 0.31377 (12) | 0.98968 (10) | 0.0254 (2) | |
O2 | 0.42507 (14) | 0.26523 (13) | 1.06179 (10) | 0.0265 (2) | |
N1 | 0.76336 (16) | 0.25574 (13) | 0.35379 (11) | 0.0224 (2) | |
C1 | 0.92560 (19) | 0.27226 (16) | 0.42073 (13) | 0.0230 (3) | |
C2 | 0.90026 (18) | 0.26052 (15) | 0.61000 (13) | 0.0213 (3) | |
C3 | 0.70027 (17) | 0.22678 (14) | 0.73776 (12) | 0.0190 (2) | |
C4 | 0.53129 (18) | 0.20958 (16) | 0.66913 (14) | 0.0229 (3) | |
C5 | 0.56957 (19) | 0.22600 (16) | 0.47756 (14) | 0.0239 (3) | |
C6 | 0.67107 (18) | 0.20191 (16) | 0.94485 (13) | 0.0219 (3) | |
H1 | 1.06470 | 0.29300 | 0.33430 | 0.0280* | |
H1O | 0.781 (4) | 0.284 (3) | 1.118 (3) | 0.074 (6)* | |
H2 | 1.01840 | 0.27540 | 0.65200 | 0.0260* | |
H2O | 0.346 (3) | 0.404 (3) | 1.044 (2) | 0.045 (4)* | |
H4 | 0.39160 | 0.18690 | 0.75210 | 0.0280* | |
H5 | 0.45200 | 0.21560 | 0.43200 | 0.0290* | |
H6 | 0.75620 | 0.05130 | 0.96300 | 0.0260* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0307 (4) | 0.0367 (4) | 0.0150 (3) | −0.0175 (3) | −0.0103 (3) | 0.0032 (3) |
O2 | 0.0282 (4) | 0.0345 (4) | 0.0160 (3) | −0.0162 (3) | −0.0024 (3) | 0.0027 (3) |
N1 | 0.0261 (4) | 0.0251 (4) | 0.0159 (4) | −0.0086 (3) | −0.0083 (3) | 0.0008 (3) |
C1 | 0.0246 (5) | 0.0299 (5) | 0.0151 (4) | −0.0127 (4) | −0.0050 (3) | 0.0020 (3) |
C2 | 0.0218 (4) | 0.0281 (5) | 0.0162 (4) | −0.0111 (4) | −0.0072 (3) | 0.0012 (3) |
C3 | 0.0215 (4) | 0.0207 (4) | 0.0146 (4) | −0.0076 (3) | −0.0064 (3) | 0.0008 (3) |
C4 | 0.0226 (5) | 0.0299 (5) | 0.0183 (4) | −0.0127 (4) | −0.0066 (3) | 0.0020 (4) |
C5 | 0.0255 (5) | 0.0299 (5) | 0.0195 (4) | −0.0114 (4) | −0.0105 (4) | 0.0006 (4) |
C6 | 0.0249 (5) | 0.0276 (5) | 0.0148 (4) | −0.0122 (4) | −0.0066 (3) | 0.0032 (3) |
Geometric parameters (Å, º) top
O1—C6 | 1.4101 (15) | C3—C4 | 1.3872 (17) |
O2—C6 | 1.4033 (15) | C3—C6 | 1.5151 (13) |
O1—H1O | 0.96 (2) | C4—C5 | 1.3862 (14) |
O2—H2O | 0.92 (2) | C1—H1 | 0.9500 |
N1—C5 | 1.3350 (16) | C2—H2 | 0.9500 |
N1—C1 | 1.3371 (17) | C4—H4 | 0.9500 |
C1—C2 | 1.3836 (14) | C5—H5 | 0.9500 |
C2—C3 | 1.3875 (15) | C6—H6 | 1.0000 |
| | | |
O1···N1i | 2.7039 (12) | C4···H2O | 2.901 (15) |
O1···O2ii | 2.7755 (12) | C4···H5ix | 3.0900 |
O2···O1ii | 2.7755 (12) | C5···H1Ov | 2.65 (2) |
O2···C1iii | 3.3555 (15) | C6···H2Oii | 2.72 (2) |
O1···H2Oii | 1.854 (19) | H1···O2vii | 2.4300 |
O1···H2 | 2.4400 | H1···H2Ovii | 2.5700 |
O2···H4 | 2.5500 | H1O···N1i | 1.75 (2) |
O2···H5i | 2.8500 | H1O···C1i | 2.73 (2) |
O2···H1iii | 2.4300 | H1O···C5i | 2.65 (2) |
O2···H6iv | 2.9100 | H1O···H2Oii | 2.40 (3) |
N1···O1v | 2.7039 (12) | H2···O1 | 2.4400 |
N1···C6v | 3.4225 (15) | H2···H4x | 2.5600 |
N1···C2vi | 3.4436 (14) | H2···H5x | 2.5500 |
N1···H1Ov | 1.75 (2) | H2O···C4 | 2.901 (15) |
C1···O2vii | 3.3555 (15) | H2O···H1iii | 2.5700 |
C1···C5viii | 3.5961 (17) | H2O···O1ii | 1.854 (19) |
C1···C2vi | 3.4521 (15) | H2O···C3ii | 3.054 (19) |
C1···C3vi | 3.3978 (15) | H2O···C6ii | 2.72 (2) |
C2···N1vi | 3.4436 (14) | H2O···H1Oii | 2.40 (3) |
C2···C1vi | 3.4521 (15) | H4···O2 | 2.5500 |
C3···C1vi | 3.3978 (15) | H4···H2xi | 2.5600 |
C5···C5ix | 3.5546 (17) | H5···O2v | 2.8500 |
C5···C1viii | 3.5961 (17) | H5···H2xi | 2.5500 |
C6···N1i | 3.4225 (15) | H5···C4ix | 3.0900 |
C1···H1Ov | 2.73 (2) | H6···O2iv | 2.9100 |
C3···H2Oii | 3.054 (19) | | |
| | | |
C6—O1—H1O | 105.1 (15) | O1—C6—C3 | 107.66 (9) |
C6—O2—H2O | 108.1 (12) | N1—C1—H1 | 118.00 |
C1—N1—C5 | 117.49 (9) | C2—C1—H1 | 118.00 |
N1—C1—C2 | 123.05 (11) | C1—C2—H2 | 120.00 |
C1—C2—C3 | 119.25 (11) | C3—C2—H2 | 120.00 |
C2—C3—C4 | 117.95 (9) | C3—C4—H4 | 121.00 |
C4—C3—C6 | 120.80 (10) | C5—C4—H4 | 121.00 |
C2—C3—C6 | 121.22 (10) | N1—C5—H5 | 118.00 |
C3—C4—C5 | 118.93 (11) | C4—C5—H5 | 118.00 |
N1—C5—C4 | 123.32 (12) | O1—C6—H6 | 108.00 |
O2—C6—C3 | 112.45 (10) | O2—C6—H6 | 108.00 |
O1—C6—O2 | 112.17 (8) | C3—C6—H6 | 108.00 |
| | | |
C5—N1—C1—C2 | −0.19 (15) | C6—C3—C4—C5 | −177.72 (9) |
C1—N1—C5—C4 | −0.70 (15) | C2—C3—C6—O1 | 28.02 (13) |
N1—C1—C2—C3 | 1.06 (15) | C2—C3—C6—O2 | 152.07 (9) |
C1—C2—C3—C4 | −1.03 (14) | C4—C3—C6—O1 | −154.13 (9) |
C1—C2—C3—C6 | 176.89 (9) | C4—C3—C6—O2 | −30.07 (13) |
C2—C3—C4—C5 | 0.21 (14) | C3—C4—C5—N1 | 0.69 (16) |
Symmetry codes: (i) x, y, z+1; (ii) −x+1, −y+1, −z+2; (iii) x−1, y, z+1; (iv) −x+1, −y, −z+2; (v) x, y, z−1; (vi) −x+2, −y, −z+1; (vii) x+1, y, z−1; (viii) −x+1, −y+1, −z+1; (ix) −x+1, −y, −z+1; (x) x+1, y, z; (xi) x−1, y, z. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···N1i | 0.96 (2) | 1.75 (2) | 2.7039 (12) | 174 (2) |
O2—H2O···O1ii | 0.92 (2) | 1.85 (2) | 2.7755 (12) | 175 (2) |
C1—H1···O2vii | 0.95 | 2.43 | 3.3555 (15) | 163 |
Symmetry codes: (i) x, y, z+1; (ii) −x+1, −y+1, −z+2; (vii) x+1, y, z−1. |