Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805039346/bv6020sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536805039346/bv6020Isup2.hkl |
CCDC reference: 248793
An aqueous solution of thorium nitrate pentahydrate (0.570 g in 25 ml) was added to a solution of pyrazine-2,3-dicarboxylic acid (0.745 g in 25 ml H2O) and 10% hydrazine hydrate (2 ml). The pH of the resulting solution was mantained at 3 by adding a few drops of 10% hydrazine hydrate. After concentration over a steam bath to one-half of the initial volume, the turbid solution was filtered and the clear filtrate was left for crystallization at room temperature. Pale-yellow plate-shaped crystals were found in the mother liquid after a week. They were washed with a cold (1:1) water–ethanol mixture and dried in air.
The positions of H atoms attached to the coordinated water O atoms (O1 and O2) and to the solvation water O atoms (O3, O4 and O5) were not observed directly in Fourier maps. To insert them and construct the hydrogen-bond network, the method of Nardelli (1999) as implemented in the WinGX software (Faruggia, 1999) has been adopted. The full structure of (I) was then refined using constraints on the O—H distances and H—O—H angles [please specify values]. The hydrogen bonds listed in Table 2 have reasonable geometric parameters, so they can be considered as physical. Pyrazine ring H atoms were inserted by HFIX, each at a distance of 0.93 Å from the respective C atom, and refined adopting a riding model. Small intensities of reflections in the range of large Bragg scattering angles resulted in a completeness factor of 0.95.
Data collection: KM-4 Software (Kuma, 1996); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: XP (Siemens, 1992); software used to prepare material for publication: SHELXL97.
[Th(C5H3N2O2)4(H2O)2]·3H2O | F(000) = 1568 |
Mr = 814.50 | Dx = 1.968 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 7.9080 (16) Å | Cell parameters from 25 reflections |
b = 18.014 (4) Å | θ = 6–15° |
c = 19.391 (4) Å | µ = 5.50 mm−1 |
β = 95.70 (3)° | T = 293 K |
V = 2748.7 (10) Å3 | Rectangular plate, pale yellow |
Z = 4 | 0.41 × 0.31 × 0.19 mm |
Kuma KM-4 diffractometer | 4872 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.067 |
Graphite monochromator | θmax = 30.1°, θmin = 1.6° |
ω/2θ scans | h = 0→11 |
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2000) | k = 0→25 |
Tmin = 0.241, Tmax = 0.379 | l = −26→26 |
7144 measured reflections | 3 standard reflections every 200 reflections |
5768 independent reflections | intensity decay: 9.7% |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0835P)2 + 2.9776P] where P = (Fo2 + 2Fc2)/3 |
5768 reflections | (Δ/σ)max = 0.002 |
388 parameters | Δρmax = 1.54 e Å−3 |
13 restraints | Δρmin = −3.93 e Å−3 |
[Th(C5H3N2O2)4(H2O)2]·3H2O | V = 2748.7 (10) Å3 |
Mr = 814.50 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 7.9080 (16) Å | µ = 5.50 mm−1 |
b = 18.014 (4) Å | T = 293 K |
c = 19.391 (4) Å | 0.41 × 0.31 × 0.19 mm |
β = 95.70 (3)° |
Kuma KM-4 diffractometer | 4872 reflections with I > 2σ(I) |
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2000) | Rint = 0.067 |
Tmin = 0.241, Tmax = 0.379 | 3 standard reflections every 200 reflections |
7144 measured reflections | intensity decay: 9.7% |
5768 independent reflections |
R[F2 > 2σ(F2)] = 0.042 | 13 restraints |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | Δρmax = 1.54 e Å−3 |
5768 reflections | Δρmin = −3.93 e Å−3 |
388 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Th1 | 1.03088 (3) | 0.943782 (13) | 0.253092 (13) | 0.02560 (9) | |
N11 | 0.9713 (8) | 0.8032 (3) | 0.2023 (3) | 0.0312 (13) | |
C12 | 0.8124 (10) | 0.7804 (4) | 0.2022 (4) | 0.0344 (16) | |
C13 | 0.7640 (12) | 0.7096 (5) | 0.1793 (5) | 0.047 (2) | |
H13 | 0.6515 | 0.6951 | 0.1806 | 0.056* | |
N12 | 0.8727 (11) | 0.6618 (5) | 0.1555 (5) | 0.060 (2) | |
C15 | 1.0309 (13) | 0.6856 (5) | 0.1557 (5) | 0.053 (2) | |
H15 | 1.1105 | 0.6539 | 0.1392 | 0.063* | |
C16 | 1.0843 (11) | 0.7551 (5) | 0.1793 (4) | 0.0419 (19) | |
H16 | 1.1978 | 0.7686 | 0.1793 | 0.050* | |
C17 | 0.6878 (9) | 0.8349 (4) | 0.2270 (4) | 0.0312 (14) | |
O11 | 0.7433 (7) | 0.8987 (3) | 0.2420 (3) | 0.0341 (11) | |
O12 | 0.5403 (7) | 0.8137 (3) | 0.2305 (4) | 0.0458 (15) | |
N21 | 0.9077 (10) | 0.9384 (4) | 0.1146 (4) | 0.0413 (16) | |
C22 | 1.0214 (12) | 0.9177 (5) | 0.0712 (4) | 0.0411 (18) | |
C23 | 0.9713 (14) | 0.9059 (7) | 0.0004 (5) | 0.060 (3) | |
H23 | 1.0539 | 0.8924 | −0.0281 | 0.072* | |
N22 | 0.8153 (13) | 0.9129 (7) | −0.0272 (5) | 0.068 (3) | |
C25 | 0.7009 (16) | 0.9340 (7) | 0.0170 (6) | 0.064 (3) | |
H25 | 0.5879 | 0.9406 | −0.0002 | 0.077* | |
C26 | 0.7470 (13) | 0.9457 (6) | 0.0858 (5) | 0.056 (3) | |
H26 | 0.6636 | 0.9593 | 0.1139 | 0.068* | |
C27 | 1.2021 (11) | 0.9092 (6) | 0.1019 (5) | 0.046 (2) | |
O21 | 1.2227 (7) | 0.9143 (3) | 0.1680 (3) | 0.0386 (12) | |
O22 | 1.3152 (9) | 0.8966 (5) | 0.0658 (4) | 0.070 (2) | |
N31 | 1.2036 (9) | 1.0643 (4) | 0.2043 (4) | 0.0352 (14) | |
N32 | 1.3387 (10) | 1.1983 (5) | 0.1615 (4) | 0.0457 (18) | |
C32 | 1.1049 (9) | 1.1227 (4) | 0.1864 (4) | 0.0318 (15) | |
C33 | 1.1724 (11) | 1.1898 (5) | 0.1655 (4) | 0.0395 (18) | |
H33 | 1.0997 | 1.2295 | 0.1542 | 0.047* | |
C35 | 1.4358 (10) | 1.1374 (6) | 0.1780 (5) | 0.046 (2) | |
H35 | 1.5525 | 1.1401 | 0.1755 | 0.056* | |
C36 | 1.3656 (11) | 1.0709 (5) | 0.1985 (5) | 0.046 (2) | |
H36 | 1.4363 | 1.0302 | 0.2082 | 0.055* | |
C37 | 0.9172 (9) | 1.1132 (4) | 0.1891 (4) | 0.0320 (15) | |
O31 | 0.8742 (7) | 1.0537 (3) | 0.2205 (3) | 0.0349 (11) | |
O32 | 0.8185 (8) | 1.1597 (4) | 0.1625 (4) | 0.062 (2) | |
N41 | 0.8422 (7) | 0.9956 (3) | 0.3582 (3) | 0.0266 (12) | |
C42 | 0.9275 (10) | 1.0386 (4) | 0.4055 (4) | 0.0304 (15) | |
C43 | 0.8550 (11) | 1.0694 (5) | 0.4612 (5) | 0.0394 (18) | |
H43 | 0.9204 | 1.0989 | 0.4929 | 0.047* | |
N42 | 0.6925 (9) | 1.0568 (4) | 0.4696 (4) | 0.0379 (15) | |
C45 | 0.6056 (10) | 1.0161 (4) | 0.4228 (4) | 0.0365 (17) | |
H45 | 0.4908 | 1.0080 | 0.4267 | 0.044* | |
C46 | 0.6785 (10) | 0.9842 (4) | 0.3673 (4) | 0.0361 (17) | |
H46 | 0.6123 | 0.9546 | 0.3360 | 0.043* | |
C47 | 1.1119 (11) | 1.0529 (5) | 0.3943 (4) | 0.0370 (16) | |
O41 | 1.1650 (7) | 1.0177 (3) | 0.3436 (3) | 0.0381 (12) | |
O42 | 1.1934 (9) | 1.0973 (5) | 0.4307 (4) | 0.071 (3) | |
O1 | 1.0106 (7) | 0.8497 (3) | 0.3499 (3) | 0.0413 (13) | |
H11 | 1.079 (11) | 0.814 (4) | 0.357 (6) | 0.062* | |
H12 | 0.9274 | 0.8328 | 0.3702 | 0.062* | |
O2 | 1.3021 (8) | 0.8844 (4) | 0.2961 (3) | 0.0432 (14) | |
H21 | 1.364 (12) | 0.861 (5) | 0.271 (5) | 0.065* | |
H22 | 1.323 (14) | 0.881 (6) | 0.3398 (13) | 0.065* | |
O3 | 0.4182 (8) | 0.8464 (4) | 0.4251 (3) | 0.0514 (16) | |
H301 | 0.5217 | 0.8430 | 0.4355 | 0.077* | |
H302 | 0.4030 | 0.8647 | 0.4634 | 0.077* | |
O4 | 0.7484 (13) | 0.7966 (6) | 0.4160 (6) | 0.131 (5) | |
H402 | 0.7266 | 0.7545 | 0.3910 | 0.197* | |
H401 | 0.7289 | 0.7701 | 0.4530 | 0.197* | |
O5 | 0.920 (2) | 0.7488 (7) | 0.5269 (7) | 0.172 (7) | |
H502 | 0.8893 | 0.7071 | 0.5417 | 0.258* | |
H501 | 0.9002 | 0.7789 | 0.5587 | 0.258* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Th1 | 0.01934 (12) | 0.02827 (12) | 0.03041 (13) | 0.00152 (10) | 0.00859 (8) | −0.00275 (11) |
N11 | 0.023 (3) | 0.032 (3) | 0.039 (3) | 0.005 (2) | 0.007 (2) | −0.006 (3) |
C12 | 0.028 (4) | 0.038 (4) | 0.038 (4) | −0.001 (3) | 0.008 (3) | −0.004 (3) |
C13 | 0.042 (5) | 0.038 (4) | 0.060 (6) | −0.001 (4) | 0.008 (4) | −0.021 (4) |
N12 | 0.058 (5) | 0.040 (4) | 0.083 (6) | −0.002 (4) | 0.021 (5) | −0.023 (4) |
C15 | 0.052 (6) | 0.045 (5) | 0.065 (6) | 0.018 (4) | 0.022 (5) | −0.009 (4) |
C16 | 0.038 (4) | 0.043 (4) | 0.047 (5) | 0.009 (4) | 0.016 (4) | −0.002 (4) |
C17 | 0.025 (3) | 0.039 (4) | 0.031 (4) | 0.004 (3) | 0.008 (3) | 0.002 (3) |
O11 | 0.028 (3) | 0.034 (3) | 0.041 (3) | 0.006 (2) | 0.008 (2) | −0.008 (2) |
O12 | 0.027 (3) | 0.047 (3) | 0.066 (4) | −0.003 (2) | 0.016 (3) | −0.014 (3) |
N21 | 0.039 (4) | 0.054 (4) | 0.032 (3) | 0.005 (3) | 0.008 (3) | 0.001 (3) |
C22 | 0.045 (5) | 0.044 (4) | 0.036 (4) | 0.004 (4) | 0.015 (4) | 0.001 (3) |
C23 | 0.055 (6) | 0.090 (8) | 0.038 (5) | 0.011 (6) | 0.018 (4) | −0.008 (5) |
N22 | 0.052 (6) | 0.093 (7) | 0.057 (6) | 0.004 (5) | −0.003 (4) | −0.009 (5) |
C25 | 0.047 (6) | 0.094 (9) | 0.052 (6) | 0.014 (6) | 0.001 (5) | 0.008 (6) |
C26 | 0.038 (5) | 0.082 (7) | 0.048 (5) | 0.010 (5) | 0.002 (4) | 0.005 (5) |
C27 | 0.036 (4) | 0.060 (5) | 0.044 (5) | 0.006 (4) | 0.019 (4) | 0.000 (4) |
O21 | 0.027 (3) | 0.049 (3) | 0.042 (3) | −0.001 (2) | 0.011 (2) | −0.007 (3) |
O22 | 0.048 (4) | 0.119 (7) | 0.048 (4) | 0.011 (4) | 0.025 (3) | −0.017 (4) |
N31 | 0.027 (3) | 0.039 (3) | 0.042 (4) | 0.003 (3) | 0.012 (3) | 0.000 (3) |
N32 | 0.034 (4) | 0.056 (4) | 0.048 (4) | −0.016 (3) | 0.011 (3) | 0.003 (3) |
C32 | 0.029 (4) | 0.033 (3) | 0.035 (4) | −0.007 (3) | 0.010 (3) | 0.000 (3) |
C33 | 0.029 (4) | 0.043 (4) | 0.047 (5) | −0.008 (3) | 0.004 (3) | 0.003 (3) |
C35 | 0.019 (3) | 0.063 (5) | 0.059 (5) | −0.012 (4) | 0.009 (3) | 0.001 (4) |
C36 | 0.026 (4) | 0.051 (5) | 0.061 (6) | 0.006 (3) | 0.007 (4) | 0.007 (4) |
C37 | 0.021 (3) | 0.030 (3) | 0.046 (4) | 0.006 (3) | 0.006 (3) | 0.010 (3) |
O31 | 0.023 (3) | 0.037 (3) | 0.047 (3) | 0.003 (2) | 0.013 (2) | 0.002 (2) |
O32 | 0.035 (3) | 0.052 (4) | 0.101 (6) | 0.002 (3) | 0.013 (3) | 0.029 (4) |
N41 | 0.026 (3) | 0.024 (3) | 0.032 (3) | 0.001 (2) | 0.014 (2) | −0.002 (2) |
C42 | 0.028 (4) | 0.031 (3) | 0.034 (4) | 0.002 (3) | 0.008 (3) | −0.002 (3) |
C43 | 0.034 (4) | 0.048 (5) | 0.037 (4) | −0.003 (3) | 0.012 (3) | −0.008 (3) |
N42 | 0.033 (4) | 0.047 (4) | 0.036 (3) | 0.006 (3) | 0.015 (3) | 0.000 (3) |
C45 | 0.032 (4) | 0.036 (4) | 0.045 (4) | −0.004 (3) | 0.020 (3) | −0.002 (3) |
C46 | 0.026 (4) | 0.034 (4) | 0.050 (5) | −0.004 (3) | 0.013 (3) | −0.002 (3) |
C47 | 0.031 (4) | 0.043 (4) | 0.038 (4) | −0.002 (3) | 0.010 (3) | −0.004 (3) |
O41 | 0.025 (3) | 0.047 (3) | 0.044 (3) | −0.004 (2) | 0.014 (2) | −0.012 (3) |
O42 | 0.042 (4) | 0.095 (6) | 0.081 (5) | −0.032 (4) | 0.028 (4) | −0.057 (5) |
O1 | 0.033 (3) | 0.041 (3) | 0.053 (3) | 0.008 (2) | 0.018 (3) | 0.003 (3) |
O2 | 0.031 (3) | 0.059 (4) | 0.040 (3) | 0.017 (3) | 0.010 (2) | −0.004 (3) |
O3 | 0.043 (4) | 0.061 (4) | 0.052 (4) | 0.004 (3) | 0.007 (3) | −0.013 (3) |
O4 | 0.081 (7) | 0.148 (10) | 0.178 (12) | 0.035 (7) | 0.072 (8) | 0.095 (9) |
O5 | 0.22 (2) | 0.121 (11) | 0.174 (15) | 0.008 (12) | 0.019 (14) | 0.018 (10) |
Th1—O41 | 2.369 (6) | N31—C36 | 1.303 (11) |
Th1—O31 | 2.388 (5) | N31—C32 | 1.334 (10) |
Th1—O11 | 2.405 (6) | N32—C33 | 1.334 (11) |
Th1—O21 | 2.409 (5) | N32—C35 | 1.359 (13) |
Th1—O2 | 2.466 (6) | C32—C33 | 1.399 (10) |
Th1—O1 | 2.545 (6) | C32—C37 | 1.501 (10) |
Th1—N11 | 2.742 (6) | C33—H33 | 0.9300 |
Th1—N21 | 2.766 (7) | C35—C36 | 1.395 (12) |
Th1—N31 | 2.781 (6) | C35—H35 | 0.9300 |
Th1—N41 | 2.804 (5) | C36—H36 | 0.9300 |
N11—C12 | 1.322 (10) | C37—O32 | 1.223 (9) |
N11—C16 | 1.352 (9) | C37—O31 | 1.295 (9) |
C12—C13 | 1.392 (11) | N41—C42 | 1.331 (9) |
C12—C17 | 1.503 (10) | N41—C46 | 1.339 (9) |
C13—N12 | 1.330 (11) | C42—C43 | 1.388 (10) |
C13—H13 | 0.9300 | C42—C47 | 1.517 (11) |
N12—C15 | 1.322 (13) | C43—N42 | 1.331 (11) |
C15—C16 | 1.384 (12) | C43—H43 | 0.9300 |
C15—H15 | 0.9300 | N42—C45 | 1.308 (11) |
C16—H16 | 0.9300 | C45—C46 | 1.394 (10) |
C17—O12 | 1.235 (9) | C45—H45 | 0.9300 |
C17—O11 | 1.254 (9) | C46—H46 | 0.9300 |
N21—C26 | 1.343 (13) | C47—O42 | 1.210 (10) |
N21—C22 | 1.343 (10) | C47—O41 | 1.274 (9) |
C22—C23 | 1.407 (13) | O1—H11 | 0.85 (2) |
C22—C27 | 1.500 (14) | O1—H12 | 0.856 (5) |
C23—N22 | 1.301 (15) | O2—H21 | 0.84 (2) |
C23—H23 | 0.9300 | O2—H22 | 0.85 (2) |
N22—C25 | 1.361 (15) | O3—H301 | 0.825 (6) |
C25—C26 | 1.363 (15) | O3—H302 | 0.832 (6) |
C25—H25 | 0.9300 | O4—H402 | 0.908 (12) |
C26—H26 | 0.9300 | O4—H401 | 0.888 (9) |
C27—O22 | 1.211 (10) | O5—H502 | 0.849 (12) |
C27—O21 | 1.278 (10) | O5—H501 | 0.848 (13) |
O41—Th1—O31 | 85.0 (2) | C22—N21—Th1 | 115.1 (6) |
O41—Th1—O11 | 127.31 (17) | N21—C22—C23 | 120.8 (9) |
O31—Th1—O11 | 78.20 (18) | N21—C22—C27 | 116.8 (8) |
O41—Th1—O21 | 111.44 (19) | C23—C22—C27 | 122.4 (8) |
O31—Th1—O21 | 110.3 (2) | N22—C23—C22 | 123.4 (9) |
O11—Th1—O21 | 121.24 (19) | N22—C23—H23 | 118.3 |
O41—Th1—O2 | 71.5 (2) | C22—C23—H23 | 118.3 |
O31—Th1—O2 | 149.3 (2) | C23—N22—C25 | 115.5 (9) |
O11—Th1—O2 | 131.8 (2) | N22—C25—C26 | 121.9 (11) |
O21—Th1—O2 | 63.3 (2) | N22—C25—H25 | 119.0 |
O41—Th1—O1 | 83.3 (2) | C26—C25—H25 | 119.0 |
O31—Th1—O1 | 132.72 (17) | N21—C26—C25 | 122.8 (10) |
O11—Th1—O1 | 73.3 (2) | N21—C26—H26 | 118.6 |
O21—Th1—O1 | 116.63 (19) | C25—C26—H26 | 118.6 |
O2—Th1—O1 | 65.1 (2) | O22—C27—O21 | 124.3 (9) |
O41—Th1—N11 | 146.5 (2) | O22—C27—C22 | 121.3 (9) |
O31—Th1—N11 | 127.2 (2) | O21—C27—C22 | 114.3 (7) |
O11—Th1—N11 | 61.86 (17) | C27—O21—Th1 | 132.5 (5) |
O21—Th1—N11 | 69.35 (19) | C36—N31—C32 | 117.5 (7) |
O2—Th1—N11 | 80.4 (2) | C36—N31—Th1 | 128.4 (6) |
O1—Th1—N11 | 68.2 (2) | C32—N31—Th1 | 114.1 (5) |
O41—Th1—N21 | 145.9 (2) | C33—N32—C35 | 115.5 (7) |
O31—Th1—N21 | 69.4 (2) | N31—C32—C33 | 121.8 (7) |
O11—Th1—N21 | 70.3 (2) | N31—C32—C37 | 117.2 (6) |
O21—Th1—N21 | 60.8 (2) | C33—C32—C37 | 121.0 (7) |
O2—Th1—N21 | 121.6 (2) | N32—C33—C32 | 121.5 (8) |
O1—Th1—N21 | 130.6 (2) | N32—C33—H33 | 119.3 |
N11—Th1—N21 | 65.6 (2) | C32—C33—H33 | 119.3 |
O41—Th1—N31 | 67.3 (2) | N32—C35—C36 | 122.0 (7) |
O31—Th1—N31 | 61.43 (19) | N32—C35—H35 | 119.0 |
O11—Th1—N31 | 136.5 (2) | C36—C35—H35 | 119.0 |
O21—Th1—N31 | 64.8 (2) | N31—C36—C35 | 121.7 (8) |
O2—Th1—N31 | 90.8 (2) | N31—C36—H36 | 119.2 |
O1—Th1—N31 | 147.1 (2) | C35—C36—H36 | 119.2 |
N11—Th1—N31 | 132.19 (19) | O32—C37—O31 | 125.4 (7) |
N21—Th1—N31 | 80.5 (2) | O32—C37—C32 | 120.0 (7) |
O41—Th1—N41 | 60.34 (17) | O31—C37—C32 | 114.6 (6) |
O31—Th1—N41 | 67.46 (18) | C37—O31—Th1 | 131.1 (4) |
O11—Th1—N41 | 67.08 (18) | C42—N41—C46 | 115.5 (6) |
O21—Th1—N41 | 171.28 (18) | C42—N41—Th1 | 115.1 (4) |
O2—Th1—N41 | 113.98 (19) | C46—N41—Th1 | 129.4 (5) |
O1—Th1—N41 | 66.95 (17) | N41—C42—C43 | 123.2 (7) |
N11—Th1—N41 | 118.96 (17) | N41—C42—C47 | 115.4 (6) |
N21—Th1—N41 | 123.8 (2) | C43—C42—C47 | 121.4 (7) |
N31—Th1—N41 | 107.61 (17) | N42—C43—C42 | 120.4 (8) |
C12—N11—C16 | 117.4 (7) | N42—C43—H43 | 119.8 |
C12—N11—Th1 | 114.6 (5) | C42—C43—H43 | 119.8 |
C16—N11—Th1 | 128.0 (5) | C45—N42—C43 | 117.3 (7) |
N11—C12—C13 | 121.1 (7) | N42—C45—C46 | 122.5 (7) |
N11—C12—C17 | 116.8 (7) | N42—C45—H45 | 118.8 |
C13—C12—C17 | 122.1 (7) | C46—C45—H45 | 118.8 |
N12—C13—C12 | 122.4 (9) | N41—C46—C45 | 121.2 (8) |
N12—C13—H13 | 118.8 | N41—C46—H46 | 119.4 |
C12—C13—H13 | 118.8 | C45—C46—H46 | 119.4 |
C15—N12—C13 | 115.7 (8) | O42—C47—O41 | 125.6 (8) |
N12—C15—C16 | 123.5 (8) | O42—C47—C42 | 119.5 (7) |
N12—C15—H15 | 118.3 | O41—C47—C42 | 114.9 (7) |
C16—C15—H15 | 118.3 | C47—O41—Th1 | 133.9 (5) |
N11—C16—C15 | 119.9 (8) | Th1—O1—H11 | 123 (8) |
N11—C16—H16 | 120.1 | Th1—O1—H12 | 133.2 |
C15—C16—H16 | 120.1 | H11—O1—H12 | 99 |
O12—C17—O11 | 125.5 (7) | Th1—O2—H21 | 124 (8) |
O12—C17—C12 | 117.9 (7) | Th1—O2—H22 | 116 (8) |
O11—C17—C12 | 116.5 (6) | H21—O2—H22 | 119 (10) |
C17—O11—Th1 | 129.6 (4) | H301—O3—H302 | 92.3 |
C26—N21—C22 | 115.5 (8) | H402—O4—H401 | 86.8 |
C26—N21—Th1 | 128.9 (6) | H502—O5—H501 | 103.9 |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H11···N32i | 0.85 (2) | 2.22 (6) | 2.994 (9) | 152 (10) |
O1—H12···O4 | 0.86 | 1.86 | 2.718 (10) | 179 |
O2—H21···O12ii | 0.84 (2) | 1.87 (3) | 2.696 (8) | 167 (11) |
O2—H22···O3ii | 0.85 (2) | 1.86 (5) | 2.668 (9) | 159 (11) |
O3—H301···O4 | 0.83 | 2.05 | 2.783 (12) | 148 |
O3—H302···N42iii | 0.83 | 2.11 | 2.886 (9) | 155 |
O4—H402···O32iv | 0.91 | 2.01 | 2.919 (14) | 179 |
O4—H401···O5 | 0.89 | 2.01 | 2.574 (19) | 120 |
O5—H502···O22v | 0.85 | 2.03 | 2.871 (15) | 174 |
O5—H501···O42vi | 0.85 | 2.36 | 3.051 (15) | 138 |
Symmetry codes: (i) −x+5/2, y−1/2, −z+1/2; (ii) x+1, y, z; (iii) −x+1, −y+2, −z+1; (iv) −x+3/2, y−1/2, −z+1/2; (v) x−1/2, −y+3/2, z+1/2; (vi) −x+2, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Th(C5H3N2O2)4(H2O)2]·3H2O |
Mr | 814.50 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 7.9080 (16), 18.014 (4), 19.391 (4) |
β (°) | 95.70 (3) |
V (Å3) | 2748.7 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 5.50 |
Crystal size (mm) | 0.41 × 0.31 × 0.19 |
Data collection | |
Diffractometer | Kuma KM-4 diffractometer |
Absorption correction | Analytical (CrysAlis RED; Oxford Diffraction, 2000) |
Tmin, Tmax | 0.241, 0.379 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7144, 5768, 4872 |
Rint | 0.067 |
(sin θ/λ)max (Å−1) | 0.705 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.124, 1.10 |
No. of reflections | 5768 |
No. of parameters | 388 |
No. of restraints | 13 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.54, −3.93 |
Computer programs: KM-4 Software (Kuma, 1996), KM-4 Software, DATAPROC (Kuma, 2001), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), XP (Siemens, 1992), SHELXL97.
Th1—O41 | 2.369 (6) | Th1—O1 | 2.545 (6) |
Th1—O31 | 2.388 (5) | Th1—N11 | 2.742 (6) |
Th1—O11 | 2.405 (6) | Th1—N21 | 2.766 (7) |
Th1—O21 | 2.409 (5) | Th1—N31 | 2.781 (6) |
Th1—O2 | 2.466 (6) | Th1—N41 | 2.804 (5) |
O41—Th1—O31 | 85.0 (2) | O31—Th1—N31 | 61.43 (19) |
O41—Th1—O1 | 83.3 (2) | O11—Th1—N31 | 136.5 (2) |
O11—Th1—O1 | 73.3 (2) | O2—Th1—N31 | 90.8 (2) |
O2—Th1—O1 | 65.1 (2) | O41—Th1—N41 | 60.34 (17) |
O2—Th1—N11 | 80.4 (2) | O21—Th1—N41 | 171.28 (18) |
N11—Th1—N21 | 65.6 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H11···N32i | 0.85 (2) | 2.22 (6) | 2.994 (9) | 152 (10) |
O1—H12···O4 | 0.856 | 1.86 | 2.718 (10) | 179 |
O2—H21···O12ii | 0.84 (2) | 1.87 (3) | 2.696 (8) | 167 (11) |
O2—H22···O3ii | 0.85 (2) | 1.86 (5) | 2.668 (9) | 159 (11) |
O3—H301···O4 | 0.83 | 2.05 | 2.783 (12) | 148 |
O3—H302···N42iii | 0.83 | 2.11 | 2.886 (9) | 155 |
O4—H402···O32iv | 0.91 | 2.01 | 2.919 (14) | 179 |
O4—H401···O5 | 0.89 | 2.01 | 2.574 (19) | 120 |
O5—H502···O22v | 0.85 | 2.03 | 2.871 (15) | 174 |
O5—H501···O42vi | 0.85 | 2.36 | 3.051 (15) | 138 |
Symmetry codes: (i) −x+5/2, y−1/2, −z+1/2; (ii) x+1, y, z; (iii) −x+1, −y+2, −z+1; (iv) −x+3/2, y−1/2, −z+1/2; (v) x−1/2, −y+3/2, z+1/2; (vi) −x+2, −y+2, −z+1. |
The structures and properties of divalent 3d transition metal complexes with the pyrazine-2-carboxylate ligand still attract much interest. In contrast, the structure of only one complex with the trivalent LaIII ion has been reported (Leciejewicz et al., 2004). Its structure is polymeric, with three bridging pathways via the pyrazine-2-carboxylate ligands.
The structure of a complex with a tetravalent ion, ThIV, is described here. It contains monomeric molecules in which four pyrazine-2-carboxylate ligands are chelated to a ThIV ion using their N,O-bonding groups. Two water O atoms complete the ten-coordination. Fig. 1 shows the complex molecule with the ligand and atom numbering, and Fig. 2 is a packing diagram.
Each acid ligand is almost coplanar since the relevant r.m.s. deviations from the mean plane are 0.027 (1), 0.049 (1), 0.073 (1) and 0.040 (1) Å for the ligands PYR1, PYR2, PYR3 and PYR4, respectively. The dihedral angles between ligand planes are PYR1/PYR2 = 63.0 (2)°, PYR2/PYR3 = 78.0 (2)°, PYR3/PYR4 = 75.9 (2)° and PYR4/PYR1 = 34.0 (2)°. The bond lengths and bond angles in the ligands are close to those reported for pyrazine-2-carboxylate acid (Takusagawa et al., 1974).
The coordination polyhedron around the ThIV ion is an irregular decahexahedron and the geometry is composed of two monocapped square pyramids rotated by ca 45° around O21—Th—N41 axis [O21—Th—N41 = 171.28 (18)°].
Fig. 3 shows the atom alignment in the polyhedron viewed along the O21—Th—N41 axis. The base of the upper pyramid consists of atoms N11, N21, N31 and O2; its apex is atom O21. The base of the lower pyramid is formed by atoms O11, O31, O41 and O1, the apex being atom N41. The bond distances and bond angles observed within this polyhedron are listed in Table 1.
The same coordination geometry has been reported in the structure of the ThIV complex with pyridine-2,6-dicarboxylate and water, in which the metal ion is coordinated by the O,O',N-bonding groups donated by two pyridine-2,6-dicarboxylate ligands and four water O atoms, forming a monomeric molecule (Degetto et al., 1978).