Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536800020729/cf6034sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536800020729/cf6034Isup2.hkl |
CCDC reference: 155900
The title compound, (I), was prepared by Spa Contract Synthesis. Crystals of (I) were grown from a methanol solution.
All H atoms were included in the refinement at calculated positions as riding models, with C—H set to 0.95 (Ar—H) and 0.98 Å (CH3), except for the pyridinium H atom, which was located on difference syntheses and for which both positional and displacement parameters were refined.
Data collection: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); cell refinement: DENZO and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); software used to prepare material for publication: SHELXL97.
Fig. 1. The molecular configuration and atom-numbering scheme for (I), showing 50% probability ellipsoids. |
C6H7N2O3+·Cl− | F(000) = 392 |
Mr = 190.59 | Dx = 1.576 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 10.6185 (4) Å | Cell parameters from 4004 reflections |
b = 7.1517 (4) Å | θ = 2.9–27.5° |
c = 11.3701 (5) Å | µ = 0.44 mm−1 |
β = 111.523 (3)° | T = 150 K |
V = 803.24 (6) Å3 | Block, colourless |
Z = 4 | 0.15 × 0.15 × 0.10 mm |
Enraf Nonius KappaCCD area-detector diffractometer | 1835 independent reflections |
Radiation source: Enraf Nonius FR591 rotating anode | 1219 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.3° |
ϕ and ω scans | h = −13→13 |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | k = −8→9 |
Tmin = 0.937, Tmax = 0.957 | l = −13→14 |
5993 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.121 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0664P)2] where P = (Fo2 + 2Fc2)/3 |
1835 reflections | (Δ/σ)max < 0.001 |
114 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C6H7N2O3+·Cl− | V = 803.24 (6) Å3 |
Mr = 190.59 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.6185 (4) Å | µ = 0.44 mm−1 |
b = 7.1517 (4) Å | T = 150 K |
c = 11.3701 (5) Å | 0.15 × 0.15 × 0.10 mm |
β = 111.523 (3)° |
Enraf Nonius KappaCCD area-detector diffractometer | 1835 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 1219 reflections with I > 2σ(I) |
Tmin = 0.937, Tmax = 0.957 | Rint = 0.042 |
5993 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.121 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.25 e Å−3 |
1835 reflections | Δρmin = −0.26 e Å−3 |
114 parameters |
Experimental. PLEASE NOTE cell_measurement_ fields are not relevant to area detector data, the entire data set is used to refine the cell, which is indexed from all observed reflections in a 10 degree phi range. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.14928 (5) | −0.48448 (7) | 0.68197 (5) | 0.0504 (2) | |
N1 | 0.29721 (17) | −0.4262 (3) | 0.95746 (18) | 0.0483 (5) | |
H1 | 0.245 (2) | −0.426 (4) | 0.870 (3) | 0.078 (8)* | |
C2 | 0.3021 (2) | −0.2817 (3) | 1.03233 (19) | 0.0455 (5) | |
H2 | 0.2585 | −0.1676 | 0.9975 | 0.057* | |
C3 | 0.37018 (18) | −0.2979 (3) | 1.15977 (17) | 0.0387 (5) | |
N31 | 0.36643 (19) | −0.1332 (2) | 1.23515 (17) | 0.0500 (5) | |
O31 | 0.29498 (18) | −0.0033 (2) | 1.18145 (18) | 0.0687 (5) | |
O32 | 0.4352 (2) | −0.1318 (2) | 1.34665 (16) | 0.0872 (6) | |
C4 | 0.43571 (18) | −0.4643 (3) | 1.21323 (18) | 0.0377 (5) | |
O41 | 0.49836 (15) | −0.47804 (18) | 1.33625 (13) | 0.0460 (4) | |
C42 | 0.5523 (2) | −0.6580 (3) | 1.3888 (2) | 0.0584 (6) | |
H421 | 0.4788 | −0.7501 | 1.3661 | 0.073* | |
H422 | 0.5939 | −0.6482 | 1.4811 | 0.073* | |
H423 | 0.6205 | −0.6977 | 1.3549 | 0.073* | |
C5 | 0.42871 (19) | −0.6114 (3) | 1.12890 (18) | 0.0426 (5) | |
H5 | 0.4727 | −0.7268 | 1.1597 | 0.053* | |
C6 | 0.35892 (19) | −0.5873 (3) | 1.00372 (19) | 0.0462 (5) | |
H6 | 0.3537 | −0.6877 | 0.9474 | 0.058* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0667 (4) | 0.0442 (4) | 0.0359 (3) | −0.0050 (2) | 0.0138 (3) | 0.0012 (2) |
N1 | 0.0532 (10) | 0.0567 (12) | 0.0342 (10) | −0.0028 (9) | 0.0150 (9) | −0.0030 (9) |
C2 | 0.0552 (12) | 0.0428 (12) | 0.0408 (12) | 0.0066 (10) | 0.0203 (10) | 0.0073 (9) |
C3 | 0.0499 (11) | 0.0323 (10) | 0.0374 (11) | −0.0019 (8) | 0.0199 (9) | −0.0027 (8) |
N31 | 0.0715 (12) | 0.0371 (10) | 0.0475 (12) | −0.0018 (9) | 0.0289 (10) | −0.0029 (8) |
O31 | 0.0751 (11) | 0.0511 (11) | 0.0778 (13) | 0.0212 (8) | 0.0255 (10) | −0.0042 (8) |
O32 | 0.1658 (19) | 0.0456 (11) | 0.0422 (10) | 0.0023 (11) | 0.0285 (11) | −0.0065 (8) |
C4 | 0.0420 (10) | 0.0394 (11) | 0.0328 (11) | −0.0050 (8) | 0.0149 (9) | −0.0020 (8) |
O41 | 0.0550 (8) | 0.0447 (9) | 0.0331 (8) | 0.0060 (6) | 0.0101 (7) | 0.0010 (6) |
C42 | 0.0693 (14) | 0.0559 (14) | 0.0452 (13) | 0.0136 (12) | 0.0152 (11) | 0.0104 (11) |
C5 | 0.0498 (11) | 0.0343 (11) | 0.0448 (12) | −0.0022 (9) | 0.0187 (10) | −0.0014 (9) |
C6 | 0.0543 (12) | 0.0438 (12) | 0.0440 (12) | −0.0107 (10) | 0.0223 (10) | −0.0109 (10) |
N1—C2 | 1.328 (3) | C4—O41 | 1.314 (2) |
N1—C6 | 1.335 (3) | C4—C5 | 1.407 (3) |
N1—H1 | 0.94 (3) | O41—C42 | 1.446 (2) |
C2—C3 | 1.366 (3) | C42—H421 | 0.98 |
C2—H2 | 0.95 | C42—H422 | 0.98 |
C3—C4 | 1.400 (3) | C42—H423 | 0.98 |
C3—N31 | 1.466 (2) | C5—C6 | 1.353 (3) |
N31—O32 | 1.209 (2) | C5—H5 | 0.95 |
N31—O31 | 1.213 (2) | C6—H6 | 0.95 |
C2—N1—C6 | 121.42 (19) | C3—C4—C5 | 116.50 (18) |
C2—N1—H1 | 123.0 (16) | C4—O41—C42 | 118.42 (16) |
C6—N1—H1 | 115.4 (16) | O41—C42—H421 | 109.5 |
N1—C2—C3 | 119.7 (2) | O41—C42—H422 | 109.5 |
N1—C2—H2 | 120.2 | H421—C42—H422 | 109.5 |
C3—C2—H2 | 120.2 | O41—C42—H423 | 109.5 |
C2—C3—C4 | 121.19 (17) | H421—C42—H423 | 109.5 |
C2—C3—N31 | 115.77 (18) | H422—C42—H423 | 109.5 |
C4—C3—N31 | 123.02 (17) | C6—C5—C4 | 119.58 (18) |
O32—N31—O31 | 123.16 (18) | C6—C5—H5 | 120.2 |
O32—N31—C3 | 118.99 (18) | C4—C5—H5 | 120.2 |
O31—N31—C3 | 117.85 (18) | N1—C6—C5 | 121.63 (19) |
O41—C4—C3 | 120.20 (17) | N1—C6—H6 | 119.2 |
O41—C4—C5 | 123.30 (17) | C5—C6—H6 | 119.2 |
C6—N1—C2—C3 | −0.8 (3) | C2—C3—C4—C5 | 0.7 (3) |
N1—C2—C3—C4 | 0.3 (3) | N31—C3—C4—C5 | 178.98 (16) |
N1—C2—C3—N31 | −178.12 (16) | C3—C4—O41—C42 | 173.49 (18) |
C2—C3—N31—O32 | −172.9 (2) | C5—C4—O41—C42 | −5.8 (3) |
C4—C3—N31—O32 | 8.7 (3) | O41—C4—C5—C6 | 178.18 (18) |
C2—C3—N31—O31 | 6.2 (3) | C3—C4—C5—C6 | −1.2 (3) |
C4—C3—N31—O31 | −172.20 (18) | C2—N1—C6—C5 | 0.3 (3) |
C2—C3—C4—O41 | −178.69 (17) | C4—C5—C6—N1 | 0.7 (3) |
N31—C3—C4—O41 | −0.4 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Cl1 | 0.94 (3) | 2.05 (3) | 2.974 (2) | 167 (2) |
C5—H5···Cl1i | 0.95 | 2.74 | 3.629 (2) | 157 |
C6—H6···Cl1ii | 0.95 | 2.58 | 3.521 (2) | 173 |
Symmetry codes: (i) x+1/2, −y−3/2, z+1/2; (ii) −x+1/2, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C6H7N2O3+·Cl− |
Mr | 190.59 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 150 |
a, b, c (Å) | 10.6185 (4), 7.1517 (4), 11.3701 (5) |
β (°) | 111.523 (3) |
V (Å3) | 803.24 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.44 |
Crystal size (mm) | 0.15 × 0.15 × 0.10 |
Data collection | |
Diffractometer | Enraf Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SORTAV; Blessing, 1995) |
Tmin, Tmax | 0.937, 0.957 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5993, 1835, 1219 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.121, 1.00 |
No. of reflections | 1835 |
No. of parameters | 114 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.25, −0.26 |
Computer programs: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998), DENZO and COLLECT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXL97.
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Cl1 | 0.94 (3) | 2.05 (3) | 2.974 (2) | 167 (2) |
C5—H5···Cl1i | 0.95 | 2.74 | 3.629 (2) | 157 |
C6—H6···Cl1ii | 0.95 | 2.58 | 3.521 (2) | 173 |
Symmetry codes: (i) x+1/2, −y−3/2, z+1/2; (ii) −x+1/2, y−1/2, −z+3/2. |
The basified form of 4-methoxy-3-nitropyridine, i.e. the title compound 4-methoxy-3-nitropyridinium chloride, (I), is a useful intermediate in which the methoxy group of can be readily replaced by nucleophiles. The molecule is also commercially available as the 4-ethoxy derivative but the methoxy version is less expensive. Both derivatives are prepared via the 4-chloro analogue, which is then treated with the appropriate alcohol. The 4-chloro compound has increased reactivity to nucleophiles but it is very lipophilic and corrosive to the skin, so it is much easier to handle as a 4-alkoxy compound.