Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270108031739/fn3002sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270108031739/fn3002Isup2.hkl |
CCDC reference: 710749
The compound was obtained from Lancaster Synthesis Inc. Attempts were made to recrystallize the compound from a number of solvents but none gave acceptable crystals. Crystals from the original sample were used for the data collection.
The crystals had a strong tendency to twin. When a single crystal was eventually found, the solution and refinement were straightforward. The H-atom positions and isotropic displacement parameters were refined [C—H = 0.970 (18) and 0.91 (3) Å].
3,5-Difluorobenzonitrile (hereafter 35D; Britton, 2002) and 2,6-difluorobenzonitrile (hereafter 26D; Britton, 2004) both pack in slightly puckered molecular sheets held together by weak C—H···N and very weak C—H···F hydrogen bonds. The structure determination of the title compound (hereafter 246T) was undertaken to see the effect of replacing one more H atom with F, with the expectation that the C—H···N interactions would be slightly stronger (shorter).
There are two half-molecules and one quarter-molecule in the asymmetric unit (Z' = 5/4). Molecules 1 and 2 are normal to a mirror plane, and molecule 3 is on the intersection of two mirror planes. The Z value can be described, in the notation of Zorky (1996), as Z = 20(m2mm1). The atom labelling and anisotropic displacement parameters for all three moleclules are shown in Fig. 1. The bond lengths and angles are all normal. The ring angles at atoms C11 and C13 and analogous atoms are less than 120°, and those at atoms C12 and C14 and analogous atoms are greater, in reasonable agreement with the substituent effects described by Domenicano (1992).
The molecules are arranged in layers normal to c. Each of the three types of molecules form layers with their own kind. The stacking of these layers is shown in Fig. 2; the unique layers are indicated by the labelling of the N atoms. Layer 3 is exactly planar. Molecules in layer 2 are tilted 2.9 (1)° away from parallel to layer 3. The N28 atoms are 2.862 (3) Å away from the plane of layer 3, and the F24 atoms 3.181 (2) Å away. A molecule in layer 1 is tilted 8.7 (1)° away from the plane of layer 3, and 11.6° away from the mean plane of a molecule in layer 2.
The molecules in the layers form C—H···N hydrogen bonds. The metric data for these bonds are given in Table 1, where they are compared with similar bonds in 35D and 26D. The H···N distances in molecules 2 and 3 are shorter than those in 35D and 26D, but the H···N distance in molecule 1 is not. This would appear to be a consequence of the deviation from planarity in the layer.
The stacking of the layers is shown in Fig. 3. The overlaps between layers 1 and 2 and between 2 and 3 are about the same, with no overlap between the rings and F atoms in one ring above the ring in the next layer. When layer 1 overlaps with layer 1', the rings do overlap, and the CN group in one molecule lies above the ring in the next layer. The two intralayer packing modes must have about the same energy; otherwise a structure with one of these modes exclusively ought to be favored.
Given the two distinctly different packing modes in the same structure, it seems likely that polymorphs might exist. Crystals were grown from acetone, benzene, CH2Cl2, CHCl3, CCl4 and acetonitrile. However, the crystals were all poor; in the two cases where a unit cell could be determined, it was the known cell.
For related literature, see: Britton (2002, 2004); Domenicano (1992); Zorky (1996).
Data collection: SMART (Bruker, 2003); cell refinement: SAINT (Bruker, 2003); data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
C7H2F3N | F(000) = 1560 |
Mr = 157.10 | Dx = 1.631 Mg m−3 |
Orthorhombic, Cmcm | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2c 2 | Cell parameters from 2977 reflections |
a = 7.5228 (10) Å | θ = 2.9–27.4° |
b = 13.8222 (18) Å | µ = 0.16 mm−1 |
c = 30.755 (4) Å | T = 173 K |
V = 3198.0 (7) Å3 | Prism, colorless |
Z = 20 | 0.5 × 0.5 × 0.4 mm |
Bruker SMART 1K CCD area-detector diffractometer | 2004 independent reflections |
Radiation source: fine-focus sealed tube | 1721 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
ω scans | θmax = 27.5°, θmin = 1.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003; Blessing, 1995) | h = −9→9 |
Tmin = 0.93, Tmax = 0.94 | k = −17→17 |
18050 measured reflections | l = −39→39 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.040 | All H-atom parameters refined |
wR(F2) = 0.127 | w = 1/[σ2(Fo2) + (0.064P)2 + 1.81P] where P = (Fo2 + 2Fc2)/3 |
S = 1.12 | (Δ/σ)max = 0.001 |
2004 reflections | Δρmax = 0.35 e Å−3 |
165 parameters | Δρmin = −0.27 e Å−3 |
0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0016 (3) |
C7H2F3N | V = 3198.0 (7) Å3 |
Mr = 157.10 | Z = 20 |
Orthorhombic, Cmcm | Mo Kα radiation |
a = 7.5228 (10) Å | µ = 0.16 mm−1 |
b = 13.8222 (18) Å | T = 173 K |
c = 30.755 (4) Å | 0.5 × 0.5 × 0.4 mm |
Bruker SMART 1K CCD area-detector diffractometer | 2004 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003; Blessing, 1995) | 1721 reflections with I > 2σ(I) |
Tmin = 0.93, Tmax = 0.94 | Rint = 0.028 |
18050 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.127 | All H-atom parameters refined |
S = 1.12 | Δρmax = 0.35 e Å−3 |
2004 reflections | Δρmin = −0.27 e Å−3 |
165 parameters |
x | y | z | Uiso*/Ueq | ||
C11 | 0.5000 | −0.01950 (12) | 0.05738 (5) | 0.0287 (4) | |
F12 | 0.19046 (11) | −0.01670 (7) | 0.05722 (3) | 0.0514 (3) | |
C12 | 0.34258 (17) | 0.03226 (10) | 0.05363 (4) | 0.0341 (3) | |
C13 | 0.3385 (2) | 0.13039 (11) | 0.04635 (5) | 0.0433 (4) | |
H13 | 0.233 (3) | 0.1608 (13) | 0.0436 (6) | 0.053 (5)* | |
F14 | 0.5000 | 0.27250 (9) | 0.03568 (5) | 0.0714 (5) | |
C14 | 0.5000 | 0.17609 (15) | 0.04288 (6) | 0.0449 (5) | |
C17 | 0.5000 | −0.12236 (14) | 0.06366 (6) | 0.0326 (4) | |
N18 | 0.5000 | −0.20423 (13) | 0.06765 (6) | 0.0437 (4) | |
C21 | 0.5000 | 0.42065 (12) | 0.15322 (5) | 0.0256 (4) | |
F22 | 0.18998 (10) | 0.41825 (7) | 0.15336 (3) | 0.0402 (3) | |
C22 | 0.34242 (16) | 0.36836 (10) | 0.15196 (4) | 0.0279 (3) | |
C23 | 0.33765 (19) | 0.26903 (10) | 0.14946 (4) | 0.0323 (3) | |
H23 | 0.225 (2) | 0.2352 (12) | 0.1486 (5) | 0.038 (4)* | |
F24 | 0.5000 | 0.12533 (8) | 0.14657 (4) | 0.0462 (4) | |
C24 | 0.5000 | 0.22265 (13) | 0.14846 (5) | 0.0316 (4) | |
C27 | 0.5000 | 0.52423 (13) | 0.15530 (6) | 0.0317 (4) | |
N28 | 0.5000 | 0.60661 (13) | 0.15692 (7) | 0.0489 (5) | |
C31 | 0.5000 | −0.01780 (17) | 0.2500 | 0.0259 (5) | |
F32 | 0.18994 (14) | −0.01524 (9) | 0.2500 | 0.0409 (3) | |
C32 | 0.3421 (2) | 0.03461 (13) | 0.2500 | 0.0280 (4) | |
C33 | 0.3377 (3) | 0.13438 (13) | 0.2500 | 0.0323 (4) | |
H33 | 0.232 (4) | 0.1666 (19) | 0.2500 | 0.052 (7)* | |
F34 | 0.5000 | 0.27807 (11) | 0.2500 | 0.0453 (5) | |
C34 | 0.5000 | 0.18077 (18) | 0.2500 | 0.0327 (6) | |
C37 | 0.5000 | −0.12155 (19) | 0.2500 | 0.0324 (5) | |
N38 | 0.5000 | −0.20380 (18) | 0.2500 | 0.0496 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C11 | 0.0299 (9) | 0.0305 (9) | 0.0257 (8) | 0.000 | 0.000 | 0.0000 (6) |
F12 | 0.0272 (4) | 0.0619 (6) | 0.0650 (6) | 0.0003 (4) | 0.0024 (4) | 0.0032 (5) |
C12 | 0.0302 (7) | 0.0405 (7) | 0.0316 (6) | 0.0029 (5) | 0.0024 (5) | −0.0014 (5) |
C13 | 0.0511 (9) | 0.0408 (8) | 0.0381 (7) | 0.0166 (7) | −0.0008 (6) | −0.0011 (6) |
F14 | 0.1211 (15) | 0.0285 (7) | 0.0645 (9) | 0.000 | 0.000 | 0.0033 (6) |
C14 | 0.0726 (15) | 0.0286 (10) | 0.0337 (10) | 0.000 | 0.000 | −0.0001 (7) |
C17 | 0.0311 (9) | 0.0359 (10) | 0.0306 (9) | 0.000 | 0.000 | −0.0006 (7) |
N18 | 0.0498 (10) | 0.0328 (9) | 0.0487 (10) | 0.000 | 0.000 | 0.0006 (7) |
C21 | 0.0253 (8) | 0.0236 (8) | 0.0280 (8) | 0.000 | 0.000 | 0.0018 (6) |
F22 | 0.0210 (4) | 0.0431 (5) | 0.0566 (5) | 0.0032 (3) | −0.0018 (3) | −0.0015 (4) |
C22 | 0.0234 (6) | 0.0310 (7) | 0.0294 (6) | 0.0005 (5) | −0.0012 (4) | 0.0011 (4) |
C23 | 0.0351 (7) | 0.0312 (7) | 0.0306 (6) | −0.0086 (5) | −0.0018 (5) | 0.0002 (5) |
F24 | 0.0747 (10) | 0.0225 (6) | 0.0413 (6) | 0.000 | 0.000 | −0.0016 (4) |
C24 | 0.0491 (11) | 0.0218 (8) | 0.0238 (8) | 0.000 | 0.000 | 0.0004 (6) |
C27 | 0.0248 (8) | 0.0270 (9) | 0.0434 (10) | 0.000 | 0.000 | 0.0023 (7) |
N28 | 0.0398 (10) | 0.0283 (9) | 0.0787 (14) | 0.000 | 0.000 | 0.0016 (8) |
C31 | 0.0240 (11) | 0.0251 (12) | 0.0285 (11) | 0.000 | 0.000 | 0.000 |
F32 | 0.0217 (5) | 0.0427 (7) | 0.0584 (7) | −0.0028 (4) | 0.000 | 0.000 |
C32 | 0.0224 (8) | 0.0315 (9) | 0.0302 (8) | 0.0010 (6) | 0.000 | 0.000 |
C33 | 0.0340 (10) | 0.0316 (9) | 0.0313 (9) | 0.0107 (7) | 0.000 | 0.000 |
F34 | 0.0754 (13) | 0.0212 (7) | 0.0392 (9) | 0.000 | 0.000 | 0.000 |
C34 | 0.0495 (16) | 0.0220 (11) | 0.0264 (11) | 0.000 | 0.000 | 0.000 |
C37 | 0.0246 (12) | 0.0276 (13) | 0.0448 (14) | 0.000 | 0.000 | 0.000 |
N38 | 0.0385 (13) | 0.0281 (12) | 0.082 (2) | 0.000 | 0.000 | 0.000 |
C11—C17 | 1.435 (2) | C23—C24 | 1.3797 (16) |
C11—C12 | 1.3884 (16) | C23—H23 | 0.970 (18) |
F12—C12 | 1.3341 (16) | F24—C24 | 1.346 (2) |
C12—C13 | 1.375 (2) | C27—N28 | 1.140 (3) |
C13—C14 | 1.3733 (19) | C31—C32 | 1.391 (2) |
C13—H13 | 0.905 (19) | C31—C37 | 1.434 (3) |
F14—C14 | 1.351 (2) | F32—C32 | 1.336 (2) |
C17—N18 | 1.138 (3) | C32—C33 | 1.379 (3) |
C21—C22 | 1.3890 (15) | C33—C34 | 1.379 (2) |
C21—C27 | 1.433 (2) | C33—H33 | 0.91 (3) |
F22—C22 | 1.3387 (14) | F34—C34 | 1.345 (3) |
C22—C23 | 1.3756 (19) | C37—N38 | 1.137 (4) |
C17—C11—C12 | 121.45 (8) | C22—C23—H23 | 120.3 (10) |
C12—C11—C12i | 117.07 (17) | C24—C23—H23 | 123.5 (10) |
F12—C12—C13 | 119.66 (13) | F24—C24—C23 | 117.72 (8) |
F12—C12—C11 | 117.60 (12) | C23—C24—C23i | 124.56 (17) |
C13—C12—C11 | 122.74 (14) | N28—C27—C21 | 179.9 (2) |
C12—C13—C14 | 116.54 (15) | C32—C31—C32ii | 117.3 (2) |
C12—C13—H13 | 119.6 (12) | C32—C31—C37 | 121.37 (11) |
C14—C13—H13 | 123.9 (12) | F32—C32—C33 | 119.69 (16) |
F14—C14—C13 | 117.81 (9) | F32—C32—C31 | 117.58 (15) |
C13i—C14—C13 | 124.39 (18) | C33—C32—C31 | 122.73 (17) |
N18—C17—C11 | 178.5 (2) | C32—C33—C34 | 116.35 (17) |
C22—C21—C22i | 117.18 (15) | C32—C33—H33 | 120.7 (17) |
C22—C21—C27 | 121.41 (8) | C34—C33—H33 | 123.0 (17) |
F22—C22—C23 | 119.57 (12) | F34—C34—C33 | 117.71 (11) |
F22—C22—C21 | 117.53 (11) | C33—C34—C33ii | 124.6 (2) |
C23—C22—C21 | 122.90 (12) | N38—C37—C31 | 180.0 |
C22—C23—C24 | 116.23 (13) | ||
C17—C11—C12—F12 | 1.7 (2) | F22—C22—C23—C24 | −179.54 (12) |
C12i—C11—C12—F12 | −179.95 (9) | C21—C22—C23—C24 | 0.33 (19) |
C17—C11—C12—C13 | −178.07 (15) | C22—C23—C24—F24 | 179.19 (12) |
C12i—C11—C12—C13 | 0.3 (3) | C22—C23—C24—C23i | −0.5 (2) |
F12—C12—C13—C14 | −179.82 (14) | C32ii—C31—C32—F32 | 180.0 |
C11—C12—C13—C14 | 0.0 (2) | C37—C31—C32—F32 | 0.0 |
C12—C13—C14—F14 | 179.94 (15) | C32ii—C31—C32—C33 | 0.0 |
C12—C13—C14—C13i | −0.2 (3) | C37—C31—C32—C33 | 180.0 |
C22i—C21—C22—F22 | 179.71 (9) | F32—C32—C33—C34 | 180.0 |
C27—C21—C22—F22 | −0.9 (2) | C31—C32—C33—C34 | 0.0 |
C22i—C21—C22—C23 | −0.2 (2) | C32—C33—C34—F34 | 180.0 |
C27—C21—C22—C23 | 179.24 (14) | C32—C33—C34—C33ii | 0.0 |
Symmetry codes: (i) −x+1, y, z; (ii) −x+1, y, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C7H2F3N |
Mr | 157.10 |
Crystal system, space group | Orthorhombic, Cmcm |
Temperature (K) | 173 |
a, b, c (Å) | 7.5228 (10), 13.8222 (18), 30.755 (4) |
V (Å3) | 3198.0 (7) |
Z | 20 |
Radiation type | Mo Kα |
µ (mm−1) | 0.16 |
Crystal size (mm) | 0.5 × 0.5 × 0.4 |
Data collection | |
Diffractometer | Bruker SMART 1K CCD area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003; Blessing, 1995) |
Tmin, Tmax | 0.93, 0.94 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18050, 2004, 1721 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.127, 1.12 |
No. of reflections | 2004 |
No. of parameters | 165 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.35, −0.27 |
Computer programs: SMART (Bruker, 2003), SAINT (Bruker, 2003), SHELXTL (Sheldrick, 2008).
compound | H | N | C-H | C-H···N | H···N | H···N≡C | C···N |
35D | H2 | N1 | 0.97 (2) | 151 (1) | 2.65 (2) | 134 (1) | 3.523 (2) |
26D | H3 | N1 | 0.95 (2) | 160 (1) | 2.63 (2) | 99 (1) | 3.537 (2) |
26D | H4 | N1 | 0.97 (2) | 124 (1) | 2.75 (2) | 124 (1) | 3.393 (2) |
26D | H5 | N1 | 0.97 (2) | 125 (1) | 2.71 (2) | 175 (1) | 3.352 (2) |
246T | H13 | N18i | 0.91 (2) | 151 (1) | 2.66 (2) | 132 (1) | 3.484 (2) |
246T | H23 | N28ii | 0.97 (2) | 161 (1) | 2.47 (2) | 136 (1) | 3.398 (2) |
246T | H33 | N38i | 0.91 (3) | 164 (1) | 2.50 (3) | 136 (1) | 3.385 (2) |
Symmetry codes: (i) x-1/2, y+1/2, z; (ii) x-1/2, y-1/2, z. |
3,5-Difluorobenzonitrile (hereafter 35D; Britton, 2002) and 2,6-difluorobenzonitrile (hereafter 26D; Britton, 2004) both pack in slightly puckered molecular sheets held together by weak C—H···N and very weak C—H···F hydrogen bonds. The structure determination of the title compound (hereafter 246T) was undertaken to see the effect of replacing one more H atom with F, with the expectation that the C—H···N interactions would be slightly stronger (shorter).
There are two half-molecules and one quarter-molecule in the asymmetric unit (Z' = 5/4). Molecules 1 and 2 are normal to a mirror plane, and molecule 3 is on the intersection of two mirror planes. The Z value can be described, in the notation of Zorky (1996), as Z = 20(m2mm1). The atom labelling and anisotropic displacement parameters for all three moleclules are shown in Fig. 1. The bond lengths and angles are all normal. The ring angles at atoms C11 and C13 and analogous atoms are less than 120°, and those at atoms C12 and C14 and analogous atoms are greater, in reasonable agreement with the substituent effects described by Domenicano (1992).
The molecules are arranged in layers normal to c. Each of the three types of molecules form layers with their own kind. The stacking of these layers is shown in Fig. 2; the unique layers are indicated by the labelling of the N atoms. Layer 3 is exactly planar. Molecules in layer 2 are tilted 2.9 (1)° away from parallel to layer 3. The N28 atoms are 2.862 (3) Å away from the plane of layer 3, and the F24 atoms 3.181 (2) Å away. A molecule in layer 1 is tilted 8.7 (1)° away from the plane of layer 3, and 11.6° away from the mean plane of a molecule in layer 2.
The molecules in the layers form C—H···N hydrogen bonds. The metric data for these bonds are given in Table 1, where they are compared with similar bonds in 35D and 26D. The H···N distances in molecules 2 and 3 are shorter than those in 35D and 26D, but the H···N distance in molecule 1 is not. This would appear to be a consequence of the deviation from planarity in the layer.
The stacking of the layers is shown in Fig. 3. The overlaps between layers 1 and 2 and between 2 and 3 are about the same, with no overlap between the rings and F atoms in one ring above the ring in the next layer. When layer 1 overlaps with layer 1', the rings do overlap, and the CN group in one molecule lies above the ring in the next layer. The two intralayer packing modes must have about the same energy; otherwise a structure with one of these modes exclusively ought to be favored.
Given the two distinctly different packing modes in the same structure, it seems likely that polymorphs might exist. Crystals were grown from acetone, benzene, CH2Cl2, CHCl3, CCl4 and acetonitrile. However, the crystals were all poor; in the two cases where a unit cell could be determined, it was the known cell.