Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270108017502/gd3216sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270108017502/gd3216Isup2.hkl |
CCDC reference: 697587
The title compound was synthesized according a minor modification of the reported procedure (Hanefeld & Gunes, 1986), in which hydrogen peroxide was used as the oxidant instead of nitric acid. Prism-shaped [Needle in CIF tables - please clarify] colourless single crystals of (I) were obtained by slow evaporation of a solution in diethyl ether. The hydrogen sulfate and water components are by-products of the synthetic procedure.
Methylene, amine and hydroxyl H atoms were placed in idealized locations and refined using a riding model, with Uiso(H) = 1.2Ueq(Cmethylene, Namine) or Uiso(H) = 1.5Ueq(Ohydroxyl), and with C—H = 0.97 Å, N—H = 0.86 Å and O—H = 0.82 Å. Water H atoms were permitted to ride at the position derived from the difference maps, with Uiso(H) = 1.5Ueq(Owater), giving O—H distances of 0.85 Å.
Data collection: COLLECT (Nonius, 2000); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 1999).
C6H9N2OS2+·HO4S−·H2O | F(000) = 632 |
Mr = 304.36 | Dx = 1.711 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 10761 reflections |
a = 5.8508 (2) Å | θ = 2.9–27.5° |
b = 13.0999 (4) Å | µ = 0.65 mm−1 |
c = 15.4187 (5) Å | T = 294 K |
V = 1181.84 (7) Å3 | Needle, colourless |
Z = 4 | 0.14 × 0.05 × 0.03 mm |
Nonius KappaCCD diffractometer | 2266 reflections with I > 2σ(I) |
CCD scans | Rint = 0.056 |
Absorption correction: analytical (Alcock, 1970) | θmax = 27.5°, θmin = 3.1° |
Tmin = 0.878, Tmax = 0.966 | h = −7→7 |
14972 measured reflections | k = −16→16 |
2712 independent reflections | l = −18→19 |
Refinement on F2 | H-atom parameters constrained |
Least-squares matrix: full | w = 1/[σ2(Fo2) + (0.0645P)2 + 0.1721P] where P = (Fo2 + 2Fc2)/3 |
R[F2 > 2σ(F2)] = 0.040 | (Δ/σ)max < 0.001 |
wR(F2) = 0.106 | Δρmax = 0.25 e Å−3 |
S = 1.03 | Δρmin = −0.43 e Å−3 |
2712 reflections | Absolute structure: Flack (1983), with 1126 Friedel pairs |
158 parameters | Absolute structure parameter: −0.04 (10) |
0 restraints |
C6H9N2OS2+·HO4S−·H2O | V = 1181.84 (7) Å3 |
Mr = 304.36 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 5.8508 (2) Å | µ = 0.65 mm−1 |
b = 13.0999 (4) Å | T = 294 K |
c = 15.4187 (5) Å | 0.14 × 0.05 × 0.03 mm |
Nonius KappaCCD diffractometer | 2712 independent reflections |
Absorption correction: analytical (Alcock, 1970) | 2266 reflections with I > 2σ(I) |
Tmin = 0.878, Tmax = 0.966 | Rint = 0.056 |
14972 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | H-atom parameters constrained |
wR(F2) = 0.106 | Δρmax = 0.25 e Å−3 |
S = 1.03 | Δρmin = −0.43 e Å−3 |
2712 reflections | Absolute structure: Flack (1983), with 1126 Friedel pairs |
158 parameters | Absolute structure parameter: −0.04 (10) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | −0.2155 (5) | 0.67390 (19) | 0.06591 (18) | 0.0387 (6) | |
C2 | 0.0215 (7) | 0.6715 (3) | 0.2066 (2) | 0.0718 (12) | |
H2A | 0.1208 | 0.7213 | 0.2339 | 0.086* | |
H2B | −0.0198 | 0.6207 | 0.2496 | 0.086* | |
C3 | 0.1430 (5) | 0.6217 (2) | 0.13284 (18) | 0.0446 (6) | |
H3A | 0.2773 | 0.661 | 0.1173 | 0.054* | |
H3B | 0.1917 | 0.5536 | 0.1494 | 0.054* | |
C4 | 0.0405 (5) | 0.5646 (2) | −0.01473 (17) | 0.0352 (5) | |
C5 | 0.0866 (7) | 0.4898 (3) | −0.1634 (2) | 0.0620 (9) | |
H5A | 0.0146 | 0.4317 | −0.1911 | 0.074* | |
H5B | 0.1587 | 0.531 | −0.208 | 0.074* | |
C6 | 0.2599 (7) | 0.4543 (3) | −0.1011 (2) | 0.0725 (11) | |
H6A | 0.2413 | 0.3818 | −0.0903 | 0.087* | |
H6B | 0.4121 | 0.4657 | −0.1241 | 0.087* | |
N1 | −0.0136 (4) | 0.61595 (17) | 0.05889 (14) | 0.0347 (5) | |
N2 | 0.2291 (4) | 0.51180 (18) | −0.02068 (16) | 0.0438 (5) | |
H2 | 0.3291 | 0.5109 | 0.0202 | 0.053* | |
O1 | −0.3565 (4) | 0.68092 (16) | 0.00813 (14) | 0.0506 (5) | |
S1 | −0.23042 (15) | 0.73305 (6) | 0.16645 (5) | 0.0558 (2) | |
S2 | −0.12763 (14) | 0.56517 (6) | −0.10671 (5) | 0.0469 (2) | |
O1W | 0.2293 (5) | 0.2342 (2) | 0.09439 (17) | 0.0673 (7) | |
H1W | 0.1245 | 0.2783 | 0.0871 | 0.101* | |
H2W | 0.2854 | 0.2204 | 0.045 | 0.101* | |
O2 | 0.5575 (5) | 0.46676 (19) | 0.10722 (19) | 0.0703 (7) | |
O3 | 0.5760 (5) | 0.3030 (2) | 0.17587 (18) | 0.0719 (8) | |
H3 | 0.4769 | 0.2847 | 0.1416 | 0.108* | |
O4 | 0.8613 (5) | 0.42366 (18) | 0.20498 (16) | 0.0662 (7) | |
O5 | 0.8428 (5) | 0.3492 (2) | 0.06472 (18) | 0.0786 (8) | |
S3 | 0.71458 (12) | 0.39105 (5) | 0.13578 (5) | 0.03976 (18) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0363 (13) | 0.0374 (13) | 0.0423 (14) | 0.0025 (11) | 0.0022 (12) | 0.0058 (11) |
C2 | 0.071 (2) | 0.094 (3) | 0.050 (2) | 0.030 (2) | −0.0205 (19) | −0.0260 (19) |
C3 | 0.0367 (14) | 0.0571 (17) | 0.0401 (14) | 0.0013 (13) | −0.0074 (12) | −0.0013 (13) |
C4 | 0.0349 (13) | 0.0351 (11) | 0.0355 (13) | −0.0031 (11) | 0.0027 (10) | 0.0045 (11) |
C5 | 0.080 (3) | 0.061 (2) | 0.0454 (18) | 0.0045 (19) | 0.0001 (18) | −0.0097 (15) |
C6 | 0.057 (2) | 0.096 (3) | 0.064 (2) | 0.016 (2) | −0.0003 (19) | −0.035 (2) |
N1 | 0.0331 (11) | 0.0379 (10) | 0.0331 (11) | 0.0028 (10) | −0.0025 (9) | −0.0001 (9) |
N2 | 0.0389 (13) | 0.0493 (12) | 0.0433 (13) | 0.0051 (11) | −0.0019 (11) | −0.0060 (10) |
O1 | 0.0403 (11) | 0.0622 (13) | 0.0493 (11) | 0.0118 (10) | −0.0048 (10) | 0.0090 (9) |
S1 | 0.0577 (5) | 0.0596 (4) | 0.0502 (4) | 0.0164 (4) | 0.0034 (4) | −0.0093 (4) |
S2 | 0.0447 (4) | 0.0593 (4) | 0.0368 (3) | −0.0016 (4) | −0.0054 (3) | −0.0001 (3) |
O1W | 0.0518 (14) | 0.0804 (17) | 0.0697 (15) | 0.0044 (13) | −0.0074 (13) | −0.0120 (14) |
O2 | 0.0630 (15) | 0.0595 (14) | 0.0884 (19) | 0.0233 (12) | −0.0160 (14) | 0.0126 (14) |
O3 | 0.0696 (17) | 0.0795 (16) | 0.0666 (15) | −0.0310 (14) | −0.0173 (13) | 0.0333 (14) |
O4 | 0.0704 (16) | 0.0734 (16) | 0.0548 (13) | −0.0134 (14) | −0.0217 (13) | 0.0004 (12) |
O5 | 0.0621 (15) | 0.112 (2) | 0.0614 (15) | 0.0206 (16) | 0.0112 (13) | −0.0203 (15) |
S3 | 0.0382 (3) | 0.0425 (3) | 0.0386 (3) | 0.0025 (3) | −0.0001 (3) | 0.0046 (3) |
C1—O1 | 1.218 (3) | C5—S2 | 1.819 (4) |
C1—N1 | 1.408 (3) | C5—H5A | 0.97 |
C1—S1 | 1.735 (3) | C5—H5B | 0.97 |
C2—C3 | 1.491 (4) | C6—N2 | 1.462 (4) |
C2—S1 | 1.791 (4) | C6—H6A | 0.97 |
C2—H2A | 0.97 | C6—H6B | 0.97 |
C2—H2B | 0.97 | N2—H2 | 0.86 |
C3—N1 | 1.464 (3) | O1W—H1W | 0.85 |
C3—H3A | 0.97 | O1W—H2W | 0.8494 |
C3—H3B | 0.97 | O2—S3 | 1.422 (2) |
C4—N2 | 1.306 (4) | O3—S3 | 1.539 (2) |
C4—N1 | 1.357 (3) | O3—H3 | 0.82 |
C4—S2 | 1.726 (3) | O4—S3 | 1.435 (2) |
C5—C6 | 1.473 (5) | O5—S3 | 1.437 (3) |
O1—C1—N1 | 123.6 (3) | H5A—C5—H5B | 108.2 |
O1—C1—S1 | 125.9 (2) | N2—C6—C5 | 107.8 (3) |
N1—C1—S1 | 110.6 (2) | N2—C6—H6A | 110.1 |
C3—C2—S1 | 109.0 (2) | C5—C6—H6A | 110.1 |
C3—C2—H2A | 109.9 | N2—C6—H6B | 110.1 |
S1—C2—H2A | 109.9 | C5—C6—H6B | 110.1 |
C3—C2—H2B | 109.9 | H6A—C6—H6B | 108.5 |
S1—C2—H2B | 109.9 | C4—N1—C1 | 121.8 (2) |
H2A—C2—H2B | 108.3 | C4—N1—C3 | 122.1 (2) |
N1—C3—C2 | 108.5 (2) | C1—N1—C3 | 115.9 (2) |
N1—C3—H3A | 110 | C4—N2—C6 | 115.9 (3) |
C2—C3—H3A | 110 | C4—N2—H2 | 122.1 |
N1—C3—H3B | 110 | C6—N2—H2 | 122.1 |
C2—C3—H3B | 110 | C1—S1—C2 | 93.79 (14) |
H3A—C3—H3B | 108.4 | C4—S2—C5 | 90.00 (15) |
N2—C4—N1 | 121.2 (2) | H1W—O1W—H2W | 107.7 |
N2—C4—S2 | 115.2 (2) | S3—O3—H3 | 109.5 |
N1—C4—S2 | 123.5 (2) | O2—S3—O4 | 114.16 (15) |
C6—C5—S2 | 109.4 (2) | O2—S3—O5 | 111.56 (18) |
C6—C5—H5A | 109.8 | O4—S3—O5 | 111.63 (17) |
S2—C5—H5A | 109.8 | O2—S3—O3 | 107.84 (16) |
C6—C5—H5B | 109.8 | O4—S3—O3 | 103.87 (14) |
S2—C5—H5B | 109.8 | O5—S3—O3 | 107.19 (18) |
S1—C2—C3—N1 | −15.3 (4) | C2—C3—N1—C1 | 12.3 (4) |
S2—C5—C6—N2 | −13.4 (4) | N1—C4—N2—C6 | 175.9 (3) |
N2—C4—N1—C1 | 179.4 (2) | S2—C4—N2—C6 | −5.1 (4) |
S2—C4—N1—C1 | 0.5 (3) | C5—C6—N2—C4 | 12.2 (4) |
N2—C4—N1—C3 | 4.8 (4) | O1—C1—S1—C2 | 175.2 (3) |
S2—C4—N1—C3 | −174.1 (2) | N1—C1—S1—C2 | −5.4 (2) |
O1—C1—N1—C4 | 1.3 (4) | C3—C2—S1—C1 | 12.2 (3) |
S1—C1—N1—C4 | −178.19 (19) | N2—C4—S2—C5 | −2.8 (2) |
O1—C1—N1—C3 | 176.2 (3) | N1—C4—S2—C5 | 176.1 (2) |
S1—C1—N1—C3 | −3.2 (3) | C6—C5—S2—C4 | 9.6 (3) |
C2—C3—N1—C4 | −172.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···O5i | 0.85 | 1.92 | 2.755 (4) | 166 |
N2—H2···O2 | 0.86 | 1.98 | 2.816 (4) | 164 |
O1W—H2W···O5ii | 0.85 | 1.95 | 2.766 (4) | 161 |
O3—H3···O1W | 0.82 | 1.75 | 2.550 (4) | 164 |
Symmetry codes: (i) x−1, y, z; (ii) x−1/2, −y+1/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C6H9N2OS2+·HO4S−·H2O |
Mr | 304.36 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 294 |
a, b, c (Å) | 5.8508 (2), 13.0999 (4), 15.4187 (5) |
V (Å3) | 1181.84 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.65 |
Crystal size (mm) | 0.14 × 0.05 × 0.03 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Analytical (Alcock, 1970) |
Tmin, Tmax | 0.878, 0.966 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14972, 2712, 2266 |
Rint | 0.056 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.106, 1.03 |
No. of reflections | 2712 |
No. of parameters | 158 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.25, −0.43 |
Absolute structure | Flack (1983), with 1126 Friedel pairs |
Absolute structure parameter | −0.04 (10) |
Computer programs: COLLECT (Nonius, 2000), SCALEPACK (Otwinowski & Minor, 1997), DENZO (Otwinowski & Minor, 1997) and SCALEPACK (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2006), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···O5i | 0.85 | 1.92 | 2.755 (4) | 166 |
N2—H2···O2 | 0.86 | 1.98 | 2.816 (4) | 164 |
O1W—H2W···O5ii | 0.85 | 1.95 | 2.766 (4) | 161 |
O3—H3···O1W | 0.82 | 1.75 | 2.550 (4) | 164 |
Symmetry codes: (i) x−1, y, z; (ii) x−1/2, −y+1/2, −z. |
Thiazolidinone derivatives are attractive targets for drug synthesis (Lesyk & Zimenkovsky, 2004) because these pharmacologically active compounds present various biological properties. For instance, antitumour (Lesyk et al., 2006), antimicrobial (Vicini et al., 2006), antidiarrhoeal (Mazzoni et al., 2006), anti-inflammatory (Ottanà et al., 2005) and antioxidant activities (Shimizu et al., 2002) have been attributed to them. In addition, they are potentially useful for neuropathic pain treatment (Shimizu et al., 2002). The synthesis and spectroscopic analysis of the title compound, (I), have been described previously (Hanefeld & Gunes, 1986). In the present paper, we report the structure of (I) (Fig. 1). A related compound, the monohydrated hydrogen sulfate salt of bis(pyrimethamine), crystallizes in the same space group (P212121) as (I) (Devi et al., 2006). Therefore, the presence of the hydrogen sulfate anion and the water molecule may play an important role in the assembly of these compounds.
The intramolecular geometric parameters of (I) were compared with those of similar structures deposited in the Cambridge Structural Database (CSD, Version?; Allen, 2002) using Mogul (Bruno et al., 2004). The lengths of the C1—N1 [1.408 (3) Å] and C1═O1 [1.218 (3) Å] bonds are typical of their types [average values 1.40 (1) and 1.21 (2) Å, respectively]. The length of the N1—C4 bond which links the two rings [1.357 (3) Å] is very similar to that of the corresponding bond [1.350 (5) Å] in the analogous compound, 1-(5-nitro-1,3-thiazol-2-yl)-2-imidazolidinone (Peeters et al., 1984), and these values are both typical for bonds of this type [average value 1.35 (1) Å].
Each of the rings adopts an envelope conformation, with atoms C2 and C6 in the flap positions of the 2-thiazolidinone and 2-thiazolyl groups, respectively. The largest deviation from the least-squares plane through the five atoms of the 2-thiazolidinone ring occurs for atom C2 [displacement 0.094 (2) Å], with an r.m.s. deviation of 0.0682 Å for the ring atoms. In the 2-thiazolyl ring, the largest displacement is for atom C6 [0.78 (22) Å], with an r.m.s. deviation of 0.0547 Å. The non-planarity of the rings arises from the adjacent CH2 groups within each ring (Raper et al., 1983; Corrêa et al., 2006). The dihedral angle between the mean planes of the two rings in the cation is only 2.1 (2)°, so that overall the cation is close to being planar.
Within the anion, the S—OH distance of 1.539 (2) Å is clearly distinct from the other three S—O distances, which are in the range 1.422 (2)–1.437 (2) Å, indicating that the H-atom site is static, rather than mobile between the O atoms. The O—S—O bond angles [103.9 (2)–114.2 (2)°] are typical of those found in hydrogen sulfate anions in crystalline salts.
The crystal packing of (I) is strongly stabilized by a network of hydrogen bonds (Table 1). Moreover, the presence of the water molecule and the hydrogen sulfate anion play a key role in the molecular aggregation, where the anions and water molecules form a helical chain of edge-fused hydrogen-bonded rings running along along the [100] direction (Fig. 2). Atom O5 acts as an acceptor from two neighbouring water molecules, while atom O1W acts as acceptor from the anion. The cation is linked to the anion via a strong N—H···O hydrogen bond (Table 1), so that the cations are all pendent from the water/anion chains.
Other hydrated sulfate and hydrogen sulfate salts containing organic cations have been described, in which the inorganic components form dimers (Lu et al., 2004), chains (Gomes et al., 1996), or networks in two and three dimensions (Warden et al., 2004; Białońska & Ciunik, 2005). In 4-carboxyphenylammonium perchlorate monohydrate (Athimoolam & Natarajan, 2006), the water molecules and the anions form chains of edge-fused hydrogen-bonded rings which resemble those reported here for (I).