The crystal structure of NaCl·CH4N2O·H2O has been determined at 117 K and redetermined at room temperature. It can be described as consisting of alternating `organic' and `inorganic' planar layers. While at room temperature the structure belongs to the space group I2, the low-temperature structure belongs to the space group Pn21m. All water O atoms are located on positions with crystallographic symmetry 2 (m) in the room-temperature (low-temperature) structure, which means that the water molecules belong, in both cases, to point group mm2. During the phase transition, half of the urea molecules per unit cell perform a 90° rotation about their respective C-O axes. The other half and the inorganic parts of the structure remain unaltered. The relationship between the two phases is remarkable, inasmuch as no obvious reason for the transition to occur could be found; the internal structures of all components of the two phases remain unaltered and even the interactions between the different parts seem to be the same before and after the transition (at least when looked at from an energetic point of view).
Supporting information
CCDC references: 700016; 700017
Urea (40.0 g, 0.666 mol), NaCl (15.5 g, 0.265 mol) and H2O (40 ml) were
stirred at 303 K by a magnetic stirrer until a clear solution had formed.
After slow evaporation of the water at 285 K (in a refrigerator), large
crystal plates formed. The experiment was repeated. The separated solution was
cooled to room temperature. A seed crystal cut from one of the crystal plates
obtained in the previous experiment was added and the solution was put into
the refrigerator. Large crystal plates formed comparatively rapidly in the
solution. The solution was removed and the plates were dried with paper. Two
small roughly isometric fragments were cut from the large crystal plates and
measured in sealed capillaries. The first fragment was measured first at 117 K
and then at room temperature. The second fragment was measured first at room
temperature and then at 117 K.
After solution and/or refinement, the two room-temperature (and the two
low-temperature) structures turned out to be essentially the same (Figs. 5 and
6). The two structures yielding the best reliability factors (the
room-temperature structure of crystal 1 and the low-temperature structure of
crystal 2) are referred to in the tables and figures. All H atoms were located
in difference maps, but free refinement did not lead to positions of
sufficient quality. Therefore, in both structures, the H atoms bonded to N
atoms were treated as riding atoms, with N—H distances of 0.88 Å and with
Uiso(H) values of 1.2Ueq(N). Restraints were applied to the
water molecules [specify values of restraints]. The correct absolute
configuration for the ambient-temperature structure, and the correct
orientation of the low-temperature structure with respect to the polar-axis
direction, were established by means of the Flack ( 1983) parameters,
although these have no chemical significance.
For both compounds, data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SCHAKAL99 (Keller, 2004); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
(I_293K) Rock salt–urea–water (1/1/1) (NaCl.CH
4N
2O.H
2O)
top
Crystal data top
NaCl·CH4N2O·H2O | F(000) = 280 |
Mr = 136.52 | Dx = 1.539 Mg m−3 |
Monoclinic, I2 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: I 2y | Cell parameters from 5993 reflections |
a = 6.4845 (2) Å | θ = 3.1–35.2° |
b = 5.2362 (2) Å | µ = 0.62 mm−1 |
c = 17.3497 (5) Å | T = 293 K |
β = 90.152 (2)° | Distorted cube, colourless |
V = 589.09 (3) Å3 | 0.4 × 0.4 × 0.4 mm |
Z = 4 | |
Data collection top
Bruker SMART CCD area-detector diffractometer | 1728 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.057 |
Graphite monochromator | θmax = 30.3°, θmin = 2.4° |
phi and ω scans | h = −9→9 |
7728 measured reflections | k = −7→7 |
1752 independent reflections | l = −24→24 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.085 | w = 1/[σ2(Fo2) + (0.0443P)2 + 0.0989P] where P = (Fo2 + 2Fc2)/3 |
S = 1.25 | (Δ/σ)max = 0.006 |
1752 reflections | Δρmax = 0.36 e Å−3 |
71 parameters | Δρmin = −0.31 e Å−3 |
5 restraints | Absolute structure: Flack (1983), 783 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.00 (7) |
Crystal data top
NaCl·CH4N2O·H2O | V = 589.09 (3) Å3 |
Mr = 136.52 | Z = 4 |
Monoclinic, I2 | Mo Kα radiation |
a = 6.4845 (2) Å | µ = 0.62 mm−1 |
b = 5.2362 (2) Å | T = 293 K |
c = 17.3497 (5) Å | 0.4 × 0.4 × 0.4 mm |
β = 90.152 (2)° | |
Data collection top
Bruker SMART CCD area-detector diffractometer | 1728 reflections with I > 2σ(I) |
7728 measured reflections | Rint = 0.057 |
1752 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.031 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.085 | Δρmax = 0.36 e Å−3 |
S = 1.25 | Δρmin = −0.31 e Å−3 |
1752 reflections | Absolute structure: Flack (1983), 783 Friedel pairs |
71 parameters | Absolute structure parameter: 0.00 (7) |
5 restraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cl1 | 0.50588 (6) | 0.41569 (9) | 0.61655 (2) | 0.03345 (12) | |
Na1 | 0.24084 (9) | 0.19015 (15) | 0.49905 (4) | 0.02959 (16) | |
O1 | 0.5000 | −0.1216 (3) | 0.5000 | 0.0336 (4) | |
H1 | 0.482 (4) | −0.215 (5) | 0.5372 (9) | 0.050* | |
O2 | 0.0000 | 0.5314 (3) | 0.5000 | 0.0334 (4) | |
H2 | 0.005 (4) | 0.629 (5) | 0.5372 (9) | 0.050* | |
O3 | 0.4972 (2) | 0.4896 (3) | 0.91172 (7) | 0.0336 (3) | |
N1 | 0.3855 (3) | 0.6191 (5) | 0.79495 (11) | 0.0564 (6) | |
H11 | 0.3002 | 0.7254 | 0.8152 | 0.068* | |
H12 | 0.3937 | 0.6057 | 0.7457 | 0.068* | |
N2 | 0.6330 (3) | 0.3147 (5) | 0.80417 (11) | 0.0561 (6) | |
H21 | 0.7129 | 0.2178 | 0.8309 | 0.067* | |
H22 | 0.6357 | 0.3080 | 0.7547 | 0.067* | |
C1 | 0.5041 (2) | 0.4763 (3) | 0.83970 (9) | 0.0291 (3) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cl1 | 0.0389 (2) | 0.0384 (2) | 0.02304 (17) | −0.00727 (17) | 0.00164 (13) | −0.00221 (16) |
Na1 | 0.0232 (3) | 0.0338 (3) | 0.0318 (3) | 0.0006 (2) | 0.0000 (2) | 0.0007 (3) |
O1 | 0.0398 (8) | 0.0244 (9) | 0.0365 (9) | 0.000 | −0.0020 (7) | 0.000 |
O2 | 0.0418 (9) | 0.0247 (8) | 0.0339 (9) | 0.000 | 0.0026 (7) | 0.000 |
O3 | 0.0371 (6) | 0.0431 (7) | 0.0206 (5) | 0.0038 (5) | −0.0004 (4) | −0.0025 (4) |
N1 | 0.0666 (11) | 0.0731 (14) | 0.0294 (8) | 0.0388 (11) | −0.0009 (8) | −0.0016 (8) |
N2 | 0.0612 (11) | 0.0750 (14) | 0.0320 (9) | 0.0392 (10) | 0.0006 (8) | −0.0049 (8) |
C1 | 0.0316 (7) | 0.0336 (9) | 0.0220 (7) | 0.0034 (6) | −0.0003 (5) | −0.0009 (5) |
Geometric parameters (Å, º) top
Cl1—Na1i | 2.8516 (8) | Na1—O3iv | 2.4281 (15) |
Cl1—Na1 | 2.9130 (8) | O3—C1 | 1.252 (2) |
Na1—Na1ii | 3.1237 (12) | N1—C1 | 1.323 (2) |
Na1—Na1i | 3.3612 (12) | N2—C1 | 1.341 (2) |
Na1—O1 | 2.3430 (13) | O1—H1 | 0.819 (15) |
Na1—O2 | 2.3732 (15) | O2—H2 | 0.825 (16) |
Na1—O3iii | 2.4251 (15) | | |
| | | |
Cl1i—Na1—Cl1 | 89.11 (2) | O2—Na1—Cl1 | 94.41 (3) |
Na1i—Cl1—Na1 | 71.32 (2) | O3iii—Na1—Cl1 | 174.21 (4) |
O1—Na1—O2 | 175.26 (5) | O3iv—Na1—Cl1 | 95.97 (4) |
O1—Na1—O3iii | 99.71 (5) | Na1—O1—Na1i | 91.66 (7) |
O2—Na1—O3iii | 84.43 (4) | Na1ii—O2—Na1 | 82.31 (6) |
O1—Na1—O3iv | 98.70 (5) | C1—O3—Na1v | 128.51 (12) |
O2—Na1—O3iv | 84.36 (4) | C1—O3—Na1vi | 133.19 (12) |
O3iii—Na1—O3iv | 78.28 (6) | Na1v—O3—Na1vi | 80.12 (5) |
O1—Na1—Cl1i | 83.05 (3) | O3—C1—N1 | 122.16 (16) |
O2—Na1—Cl1i | 94.21 (3) | O3—C1—N2 | 121.16 (16) |
O3iii—Na1—Cl1i | 96.63 (4) | N1—C1—N2 | 116.68 (17) |
O3iv—Na1—Cl1i | 174.81 (4) | H1—O1—H1i | 106 (3) |
O1—Na1—Cl1 | 81.70 (3) | H2—O2—H2ii | 103 (3) |
Symmetry codes: (i) −x+1, y, −z+1; (ii) −x, y, −z+1; (iii) x−1/2, y−1/2, z−1/2; (iv) −x+1/2, y−1/2, −z+3/2; (v) x+1/2, y+1/2, z+1/2; (vi) −x+1/2, y+1/2, −z+3/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H12···Cl1 | 0.86 | 2.56 | 3.3671 (19) | 157 |
N1—H11···Cl1vi | 0.86 | 2.52 | 3.3512 (19) | 163 |
N2—H22···Cl1 | 0.86 | 2.60 | 3.397 (2) | 155 |
N2—H21···Cl1vii | 0.86 | 2.58 | 3.4242 (19) | 168 |
O1—H1···Cl1viii | 0.82 (2) | 2.38 (2) | 3.1559 (14) | 159 (2) |
O2—H2···O3vi | 0.83 (2) | 2.08 (2) | 2.846 (2) | 154 (2) |
Symmetry codes: (vi) −x+1/2, y+1/2, −z+3/2; (vii) −x+3/2, y−1/2, −z+3/2; (viii) x, y−1, z. |
(I_117K) Rock salt–urea–water (1/1/1) (NaCl.CH
4N
2O.H
2O)
top
Crystal data top
NaCl·CH4N2O·H2O | F(000) = 280 |
Mr = 136.52 | Dx = 1.574 Mg m−3 |
Orthorhombic, Pn21m | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P -2 -2bc | Cell parameters from 4386 reflections |
a = 6.4374 (2) Å | θ = 2.4–34.9° |
b = 5.1744 (2) Å | µ = 0.63 mm−1 |
c = 17.2998 (5) Å | T = 117 K |
V = 576.25 (3) Å3 | Distorted cube, colourless |
Z = 4 | 0.3 × 0.3 × 0.3 mm |
Data collection top
Bruker SMART CCD area-detector diffractometer | 2022 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.079 |
Graphite monochromator | θmax = 35.6°, θmin = 2.4° |
phi and ω scans | h = −10→10 |
15591 measured reflections | k = −8→8 |
2688 independent reflections | l = −27→28 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.086 | w = 1/[σ2(Fo2) + (0.0424P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.95 | (Δ/σ)max = 0.002 |
2688 reflections | Δρmax = 0.66 e Å−3 |
76 parameters | Δρmin = −0.36 e Å−3 |
5 restraints | Absolute structure: Flack (1983), 1109 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.02 (6) |
Crystal data top
NaCl·CH4N2O·H2O | V = 576.25 (3) Å3 |
Mr = 136.52 | Z = 4 |
Orthorhombic, Pn21m | Mo Kα radiation |
a = 6.4374 (2) Å | µ = 0.63 mm−1 |
b = 5.1744 (2) Å | T = 117 K |
c = 17.2998 (5) Å | 0.3 × 0.3 × 0.3 mm |
Data collection top
Bruker SMART CCD area-detector diffractometer | 2022 reflections with I > 2σ(I) |
15591 measured reflections | Rint = 0.079 |
2688 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.034 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.086 | Δρmax = 0.66 e Å−3 |
S = 0.95 | Δρmin = −0.36 e Å−3 |
2688 reflections | Absolute structure: Flack (1983), 1109 Friedel pairs |
76 parameters | Absolute structure parameter: −0.02 (6) |
5 restraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cl1 | 0.26051 (4) | 0.41551 (8) | 0.616725 (17) | 0.01411 (8) | |
Na1 | 0.51476 (11) | 0.19051 (16) | 0.5000 | 0.01254 (17) | |
Na2 | −0.00615 (11) | 0.19552 (16) | 0.5000 | 0.01291 (17) | |
O1 | 0.25054 (19) | −0.1198 (3) | 0.5000 | 0.0148 (3) | |
H1 | 0.236 (2) | −0.215 (4) | 0.5380 (8) | 0.030* | |
O2 | −0.2449 (2) | 0.5368 (3) | 0.5000 | 0.0142 (3) | |
H2 | −0.234 (2) | 0.631 (4) | 0.5389 (8) | 0.028* | |
O3 | 0.24513 (15) | 0.4920 (2) | 0.91144 (6) | 0.0143 (2) | |
N1 | 0.1363 (2) | 0.6310 (4) | 0.79429 (7) | 0.0261 (3) | |
H11 | 0.0490 | 0.7409 | 0.8155 | 0.031* | |
H12 | 0.1454 | 0.6201 | 0.7436 | 0.031* | |
N2 | 0.3852 (2) | 0.3192 (4) | 0.80336 (7) | 0.0265 (3) | |
H21 | 0.4666 | 0.2178 | 0.8307 | 0.032* | |
H22 | 0.3897 | 0.3141 | 0.7525 | 0.032* | |
C1 | 0.2549 (2) | 0.4807 (3) | 0.83891 (8) | 0.0131 (3) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cl1 | 0.01587 (13) | 0.01720 (14) | 0.00927 (11) | −0.0034 (2) | 0.00045 (11) | −0.00067 (13) |
Na1 | 0.0095 (3) | 0.0144 (4) | 0.0136 (4) | −0.0007 (3) | 0.000 | 0.000 |
Na2 | 0.0102 (3) | 0.0155 (4) | 0.0130 (4) | −0.0004 (3) | 0.000 | 0.000 |
O1 | 0.0162 (6) | 0.0129 (8) | 0.0152 (6) | −0.0008 (7) | 0.000 | 0.000 |
O2 | 0.0170 (7) | 0.0122 (7) | 0.0133 (6) | −0.0004 (6) | 0.000 | 0.000 |
O3 | 0.0165 (4) | 0.0187 (5) | 0.0076 (4) | 0.0013 (4) | 0.0006 (4) | −0.0008 (4) |
N1 | 0.0280 (7) | 0.0370 (8) | 0.0134 (6) | 0.0173 (7) | −0.0002 (5) | 0.0000 (6) |
N2 | 0.0283 (7) | 0.0371 (8) | 0.0141 (6) | 0.0160 (6) | −0.0009 (5) | −0.0023 (6) |
C1 | 0.0131 (6) | 0.0159 (6) | 0.0102 (5) | −0.0012 (5) | 0.0000 (5) | 0.0007 (5) |
Geometric parameters (Å, º) top
Cl1—Na1 | 2.8481 (7) | Na2—O2 | 2.3411 (17) |
Cl1—Na2 | 2.8845 (7) | Na2—O3iii | 2.4131 (12) |
Na1—Na2i | 3.0842 (11) | O3—C1 | 1.2577 (17) |
Na1—Na2 | 3.3534 (11) | N1—C1 | 1.336 (2) |
Na1—O1 | 2.3392 (16) | N2—C1 | 1.334 (2) |
Na1—O2i | 2.3674 (17) | O1—H1 | 0.827 (15) |
Na1—O3ii | 2.4066 (12) | O2—H2 | 0.833 (15) |
Na2—O1 | 2.3223 (16) | | |
| | | |
Cl1iv—Na1—Cl1 | 90.31 (3) | O3iii—Na2—O3vi | 78.83 (6) |
Cl1—Na2—Cl1iv | 88.86 (3) | O1—Na2—Cl1 | 81.59 (3) |
Na1—Cl1—Na2 | 71.60 (2) | O2—Na2—Cl1 | 95.34 (3) |
O1—Na1—O2i | 174.16 (6) | O3iii—Na2—Cl1 | 174.94 (4) |
O1—Na1—O3ii | 100.02 (4) | O3vi—Na2—Cl1 | 96.15 (3) |
O2i—Na1—O3ii | 84.45 (4) | Na2—O1—Na1 | 92.01 (6) |
O3ii—Na1—O3v | 79.08 (6) | Na2—O2—Na1vii | 81.84 (6) |
O1—Na1—Cl1iv | 82.11 (3) | C1—O3—Na1viii | 128.53 (10) |
O2i—Na1—Cl1iv | 93.79 (3) | C1—O3—Na2ix | 133.28 (10) |
O3ii—Na1—Cl1iv | 174.23 (3) | Na1viii—O3—Na2ix | 79.57 (4) |
O3v—Na1—Cl1iv | 95.29 (3) | O3—C1—N2 | 121.36 (14) |
O2i—Na1—Cl1 | 93.79 (3) | O3—C1—N1 | 121.40 (14) |
O1—Na2—O2 | 175.67 (6) | N2—C1—N1 | 117.24 (13) |
O1—Na2—O3iii | 98.45 (5) | H1—O1—H1iv | 105 (3) |
O2—Na2—O3iii | 84.88 (4) | H2—O2—H2iv | 108 (3) |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, y−1/2, −z+3/2; (iii) −x, y−1/2, z−1/2; (iv) x, y, −z+1; (v) −x+1, y−1/2, z−1/2; (vi) −x, y−1/2, −z+3/2; (vii) x−1, y, z; (viii) −x+1, y+1/2, −z+3/2; (ix) −x, y+1/2, −z+3/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H12···Cl1 | 0.88 | 2.55 | 3.3643 (14) | 155 |
N1—H11···Cl1ix | 0.88 | 2.48 | 3.3260 (14) | 161 |
N2—H22···Cl1 | 0.88 | 2.55 | 3.3641 (13) | 155 |
N2—H21···Cl1ii | 0.88 | 2.52 | 3.3877 (15) | 168 |
O1—H1···Cl1x | 0.83 (2) | 2.35 (2) | 3.1405 (12) | 160 (2) |
O2—H2···O3ix | 0.83 (2) | 2.06 (2) | 2.8097 (18) | 150 (2) |
Symmetry codes: (ii) −x+1, y−1/2, −z+3/2; (ix) −x, y+1/2, −z+3/2; (x) x, y−1, z. |
Experimental details
| (I_293K) | (I_117K) |
Crystal data |
Chemical formula | NaCl·CH4N2O·H2O | NaCl·CH4N2O·H2O |
Mr | 136.52 | 136.52 |
Crystal system, space group | Monoclinic, I2 | Orthorhombic, Pn21m |
Temperature (K) | 293 | 117 |
a, b, c (Å) | 6.4845 (2), 5.2362 (2), 17.3497 (5) | 6.4374 (2), 5.1744 (2), 17.2998 (5) |
α, β, γ (°) | 90, 90.152 (2), 90 | 90, 90, 90 |
V (Å3) | 589.09 (3) | 576.25 (3) |
Z | 4 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.62 | 0.63 |
Crystal size (mm) | 0.4 × 0.4 × 0.4 | 0.3 × 0.3 × 0.3 |
|
Data collection |
Diffractometer | Bruker SMART CCD area-detector diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7728, 1752, 1728 | 15591, 2688, 2022 |
Rint | 0.057 | 0.079 |
(sin θ/λ)max (Å−1) | 0.710 | 0.819 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.085, 1.25 | 0.034, 0.086, 0.95 |
No. of reflections | 1752 | 2688 |
No. of parameters | 71 | 76 |
No. of restraints | 5 | 5 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.36, −0.31 | 0.66, −0.36 |
Absolute structure | Flack (1983), 783 Friedel pairs | Flack (1983), 1109 Friedel pairs |
Absolute structure parameter | 0.00 (7) | −0.02 (6) |
Selected bond lengths (Å) for (I_293K) topCl1—Na1i | 2.8516 (8) | Na1—O3iii | 2.4251 (15) |
Cl1—Na1 | 2.9130 (8) | Na1—O3iv | 2.4281 (15) |
Na1—Na1ii | 3.1237 (12) | O3—C1 | 1.252 (2) |
Na1—Na1i | 3.3612 (12) | N1—C1 | 1.323 (2) |
Na1—O1 | 2.3430 (13) | N2—C1 | 1.341 (2) |
Na1—O2 | 2.3732 (15) | | |
Symmetry codes: (i) −x+1, y, −z+1; (ii) −x, y, −z+1; (iii) x−1/2, y−1/2, z−1/2; (iv) −x+1/2, y−1/2, −z+3/2. |
Hydrogen-bond geometry (Å, º) for (I_293K) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H12···Cl1 | 0.86 | 2.56 | 3.3671 (19) | 157.1 |
N1—H11···Cl1v | 0.86 | 2.52 | 3.3512 (19) | 162.9 |
N2—H22···Cl1 | 0.86 | 2.60 | 3.397 (2) | 154.7 |
N2—H21···Cl1vi | 0.86 | 2.58 | 3.4242 (19) | 167.7 |
O1—H1···Cl1vii | 0.819 (15) | 2.38 (2) | 3.1559 (14) | 159 (2) |
O2—H2···O3v | 0.825 (16) | 2.08 (2) | 2.846 (2) | 154 (2) |
Symmetry codes: (v) −x+1/2, y+1/2, −z+3/2; (vi) −x+3/2, y−1/2, −z+3/2; (vii) x, y−1, z. |
Selected bond lengths (Å) for (I_117K) topCl1—Na1 | 2.8481 (7) | Na2—O1 | 2.3223 (16) |
Cl1—Na2 | 2.8845 (7) | Na2—O2 | 2.3411 (17) |
Na1—Na2i | 3.0842 (11) | Na2—O3iii | 2.4131 (12) |
Na1—Na2 | 3.3534 (11) | O3—C1 | 1.2577 (17) |
Na1—O1 | 2.3392 (16) | N1—C1 | 1.336 (2) |
Na1—O2i | 2.3674 (17) | N2—C1 | 1.334 (2) |
Na1—O3ii | 2.4066 (12) | | |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, y−1/2, −z+3/2; (iii) −x, y−1/2, z−1/2. |
Hydrogen-bond geometry (Å, º) for (I_117K) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H12···Cl1 | 0.88 | 2.55 | 3.3643 (14) | 154.7 |
N1—H11···Cl1iv | 0.88 | 2.48 | 3.3260 (14) | 161.0 |
N2—H22···Cl1 | 0.88 | 2.55 | 3.3641 (13) | 154.8 |
N2—H21···Cl1ii | 0.88 | 2.52 | 3.3877 (15) | 168.2 |
O1—H1···Cl1v | 0.827 (15) | 2.352 (18) | 3.1405 (12) | 159.5 (19) |
O2—H2···O3iv | 0.833 (15) | 2.06 (2) | 2.8097 (18) | 150 (2) |
Symmetry codes: (ii) −x+1, y−1/2, −z+3/2; (iv) −x, y+1/2, −z+3/2; (v) x, y−1, z. |
Alkali halide (AX)–organic molecule–water structures with a 1:1:1
composition topAX | Organic molecule | CSD-Code | Ca | Ref. |
NaCl | CH4N2O | (I) | no | Palm et al., 1963; this work |
NaCl | C27H35N2O4 | UHARUQ | yes | Gawley et al., 2002 |
NaBr | C10H17NO3 | CMHTRBb | no | Fodor et al., 1973 |
NaBr | C32H38N4O6 | ZEXCAG | yes | Suwinska, 1995 |
NaI | C18H23N2O6 | FIRYAG | yes | Arnold et al., 1987 |
NaI | C22H31NO3 | KESGUL | no | Fan et al., 2007 |
NaI | C26H38N2O4 | VIHFUNb | yes | Meadows et al., 2000 |
KI | C26H38N2O4 | VIHGICb | yes | Meadows et al., 2000 |
KI | C20H40N2O7 | VOWVEI | yes | Dalley et al., 1992 |
Notes: (a) alkali atom multiply coordinated by organic ring structure;
(b) no atomic coordinates available. |
In the Georg-Kerschensteiner-Gymnasium Müllheim there is a 30 year tradition of growing crystals by pupils (Georg-Kerschensteiner-Gymnasium Müllheim, 2008). In searching for more crystal growth experiments performable by grammar school students – and being aware of the existence of rock salt–glucose–water (1/2/1) crystals (Ferguson et al., 1991) – we have tried to grow crystals from aqueous solutions containing rock salt and urea. The growth experiments led to large single-crystal plates of which we determined the structure at ambient temperature and at 117 K. Structure analysis showed the crystals to be composed of rock salt, urea and water in the molar relation 1:1:1. Actually, NaCl.CH4N2O.H2O, (I) (or NCUREA), crystals have been known for a long time (see Kleber et al., 1950); their three-dimensional structure at ambient conditions was determined by Palm & MacGillavry (1963) from two Weissenberg zero-level photographs. Our own X-ray experiments confirm and refine the results of Palm & MacGillavry (1963) but show that the structure at 117 K is different from that at room temperature.
While in principle our room-temperature structure of (I) is equal to the I2 structure described by Palm and MacGillavry (1963) there are, not surprisingly, some differences in detail. For example, the short Cl—N distance of 3.05 Å mentioned by Palm & MacGillavry (1963) is replaced by the more reasonable distance of 3.35 Å in our investigation. Furthermore, the quality of our data allowed us to localize all H atoms in the difference Fourier maps (but see the Experimental section) and to determine the correct absolute configuration.
Palm & MacGillavry (1963) have already described the structure and its relationship to the structures of urea and NaCl. In addition to their view we would like to picture the structure (Fig. 1a) as a stacking of toothed alternating `inorganic' and `organic' (001) layers (Fig. 2). The former consist of Na+ ions, Cl- ions and H2O molecules, forming infinite –Na(µ2-OH2)Na([µ2-Cl]2,µ2-OH2)Na– chains parallel to [100] with vicinal chains connected by O—H···Cl hydrogen bonds (Fig. 3). The Cl atoms form the `teeth' of these layers. The organic layers simply contain the urea molecules with the O3 atoms acting as `teeth'. The interface between the two different layers is stabilized by Na—O3 bonds, by four different N—H···Cl hydrogen bonds and by O—H···O hydrogen bonds. As already mentioned by Palm & MacGillavry (1963), the Na+ ions are octahedrally coordinated by two Cl- ions, two water O atoms and two carbonyl O atoms (Tables 1 and 3). The Cl- ions are twofold coordinated by two Na+ ions in a nonlinear manner. If hydrogen bonds to Cl (Tables 2 and 4) are included, an irregular sevenfold coordination results.
Within one organic layer, the orientation of the planar urea molecules alternates in the 〈110〉 directions by a form of local 4 operation, i.e. one molecule is transformed into the vicinal one (approximately) by mirroring at, for example, (x, y, 3/4) and a subsequent rotation by 90° about a [001] axis roughly located at (0, 1/2, z) or (1/2, 0, z). When going from one organic layer to the vicinal one in the [001] direction, there is a similar relation between two vicinal urea molecules. Here, the mirror plane is, for example, (x, y, 1/2) and the rotation axis is defined by the (approximately) coinciding axes of the two carbonyl groups [close to (0, 0, z) or (1/2, 1/2, z)].
The 117 K Pn21m structure of (I) (Fig. 1b) differs from the room-temperature I2 structure exclusively by the fact that this latter operation (and only this one) is replaced by a real mirror m, i.e. the rotation by 90° about the [001] axis drops out. This means that in the transition from room temperature to 117 K the inorganic layers and one of the two organic layers remain essentially the same, while in the second organic layer all urea molecules perform a synchronized 90° flip about a [001] axis defined (approximately) by their respective carbonyl groups. While a superposition of the projections of the two structures parallel [100] hardly shows any positional differences, small, but significant, differences can be seen in the second organic layers when viewed parallel to the [010] direction (Fig. 4).
The coordination polyhedra of Na and of two of the four Cl atoms remain unaltered by the transition. For the other two Cl atoms, the absolute configuration of the coordination polyhedron (including H atoms) changes; furthermore, two of the H atoms (H11 and H21) are `donated' to a given Cl atom by two different urea molecules after the transition as compared with the situation before the transition (which obviously is reversible, see the Experimental section).
Thus, hydrogen bonds are broken and reformed. There is, on the other hand, no group–subgroup relation between the two space groups I2 (room temperature) and Pn21m (117 K), the multiplicity of the general position being 4 in both cases. Instead, the relationship between the two structures is reflected in the fact that both space groups are maximal non-isomorphic subgroups to Im2m. As the different components of the structure do not change significantly during the transition and as even the interactions between these different parts seem to be unaffected in principle (at least when seen from an energetical point of view), we could find no obvious reason for the transition to occur.
Another question is how easily alkali halides, purely organic molecules and water form crystalline structures as a `joint venture' as in (I). As an answer to this, a search in the 2008 release of the Cambridge Structural Database (CSD; Allen, 2002) yielded some 50 structures fulfilling this condition. However, we found only nine structures [including (I)] with a 1:1:1 composition (Table 5). In most of these, the alkali ion is `captured' (i.e. multiply coordinated) by a cyclic part of the organic molecule. Only two structures [CSD refcodes CMHTRB (Fodor et al., 1971 or 1973??) and KESGUL (Fan et al., 2007)] do not show this feature and are as such comparable to (I). In contrast to the latter, in KESGUL the inorganic part consists of isolated NaI `molecules' and isolated water molecules. Details of the CMHTRB structure are not available. Finally, it should be noted that thiourea (CH4N2S) forms structures with CsX (X = F and Cl) and water, but the compositions are 1:4:2 and 1:4:1 in these cases (Boeyens 1968a,b).