Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270107066139/gz3125sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270107066139/gz3125Isup2.hkl |
CCDC reference: 681554
A commercial sample (Aldrich Chemical Company) of cyclopentadecanone was recrystallized from ethanol [m.p. 336.5 K; literature m.p. 338.5 K (Giral, 1935)]. Purity was determined by a room-temperature 13C NMR spectrum.
H atoms were placed in calculated positions, guided by difference maps, with C—H bond distances of 0.99 Å and with Uiso = 1.2Ueq(C), and thereafter treated as riding. The structure was refined as a pseudo-merohedral twin with twin law (1 0 0, 0 - 1 0, -1 0 - 1). The twinning was perfect, with the BASF parameter refined to 0.500 (2).
Data collection: APEX2 (Bruker, 2006); cell refinement: APEX2 (Bruker, 2006); data reduction: APEX2 (Bruker, 2006); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: XSHELL (Bruker, 2004).
C15H28O | F(000) = 504 |
Mr = 224.37 | Dx = 1.080 Mg m−3 |
Monoclinic, P21/c | Melting point: 336.5 K |
Hall symbol: -P 2ybc | Cu Kα radiation, λ = 1.54178 Å |
a = 15.6634 (16) Å | Cell parameters from 1310 reflections |
b = 5.5531 (5) Å | θ = 3.1–67.1° |
c = 17.6928 (18) Å | µ = 0.48 mm−1 |
β = 116.315 (8)° | T = 90 K |
V = 1379.4 (3) Å3 | Lath, colourless |
Z = 4 | 0.34 × 0.12 × 0.07 mm |
Bruker Kappa APEXII CCD area-detector diffractometer | 2359 independent reflections |
Radiation source: fine-focus sealed tube | 2007 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.052 |
ϕ and ω scans | θmax = 67.6°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2002) | h = −17→17 |
Tmin = 0.853, Tmax = 0.967 | k = −6→2 |
5210 measured reflections | l = −20→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.164 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.1051P)2 + 0.0175P] where P = (Fo2 + 2Fc2)/3 |
2359 reflections | (Δ/σ)max < 0.001 |
146 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C15H28O | V = 1379.4 (3) Å3 |
Mr = 224.37 | Z = 4 |
Monoclinic, P21/c | Cu Kα radiation |
a = 15.6634 (16) Å | µ = 0.48 mm−1 |
b = 5.5531 (5) Å | T = 90 K |
c = 17.6928 (18) Å | 0.34 × 0.12 × 0.07 mm |
β = 116.315 (8)° |
Bruker Kappa APEXII CCD area-detector diffractometer | 2359 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2002) | 2007 reflections with I > 2σ(I) |
Tmin = 0.853, Tmax = 0.967 | Rint = 0.052 |
5210 measured reflections |
R[F2 > 2σ(F2)] = 0.059 | 0 restraints |
wR(F2) = 0.164 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.30 e Å−3 |
2359 reflections | Δρmin = −0.23 e Å−3 |
146 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.60985 (18) | −0.1031 (4) | 0.49740 (16) | 0.0375 (6) | |
C1 | 0.5870 (2) | 0.1048 (5) | 0.4775 (2) | 0.0251 (7) | |
C2 | 0.6166 (2) | 0.3050 (5) | 0.54111 (19) | 0.0273 (7) | |
H2A | 0.5587 | 0.3729 | 0.5421 | 0.033* | |
H2B | 0.6459 | 0.4341 | 0.5219 | 0.033* | |
C3 | 0.6859 (2) | 0.2361 (5) | 0.63058 (19) | 0.0282 (7) | |
H3A | 0.7214 | 0.0900 | 0.6292 | 0.034* | |
H3B | 0.6499 | 0.1976 | 0.6630 | 0.034* | |
C4 | 0.7561 (2) | 0.4378 (5) | 0.67466 (19) | 0.0277 (7) | |
H4A | 0.7884 | 0.4037 | 0.7359 | 0.033* | |
H4B | 0.7204 | 0.5904 | 0.6666 | 0.033* | |
C5 | 0.8314 (2) | 0.4708 (5) | 0.64291 (19) | 0.0260 (7) | |
H5A | 0.8758 | 0.3324 | 0.6618 | 0.031* | |
H5B | 0.7998 | 0.4704 | 0.5805 | 0.031* | |
C6 | 0.8883 (2) | 0.7024 (5) | 0.67346 (19) | 0.0271 (7) | |
H6A | 0.8449 | 0.8406 | 0.6486 | 0.033* | |
H6B | 0.9128 | 0.7123 | 0.7354 | 0.033* | |
C7 | 0.9716 (2) | 0.7260 (5) | 0.65205 (19) | 0.0292 (7) | |
H7A | 1.0206 | 0.6064 | 0.6858 | 0.035* | |
H7B | 1.0000 | 0.8878 | 0.6699 | 0.035* | |
C8 | 0.9488 (2) | 0.6918 (5) | 0.55938 (19) | 0.0280 (7) | |
H8A | 1.0086 | 0.7068 | 0.5536 | 0.034* | |
H8B | 0.9244 | 0.5263 | 0.5422 | 0.034* | |
C9 | 0.8768 (2) | 0.8681 (5) | 0.49947 (19) | 0.0248 (6) | |
H9A | 0.9017 | 1.0337 | 0.5155 | 0.030* | |
H9B | 0.8172 | 0.8554 | 0.5056 | 0.030* | |
C10 | 0.8540 (2) | 0.8260 (5) | 0.40634 (19) | 0.0261 (7) | |
H10A | 0.8177 | 0.9660 | 0.3729 | 0.031* | |
H10B | 0.9145 | 0.8178 | 0.4016 | 0.031* | |
C11 | 0.7964 (2) | 0.5957 (5) | 0.36799 (19) | 0.0269 (7) | |
H11A | 0.7963 | 0.5645 | 0.3129 | 0.032* | |
H11B | 0.8282 | 0.4579 | 0.4055 | 0.032* | |
C12 | 0.6946 (2) | 0.6108 (5) | 0.3555 (2) | 0.0277 (7) | |
H12A | 0.6557 | 0.6914 | 0.3010 | 0.033* | |
H12B | 0.6927 | 0.7126 | 0.4007 | 0.033* | |
C13 | 0.6499 (2) | 0.3687 (5) | 0.35609 (19) | 0.0271 (7) | |
H13A | 0.6920 | 0.2806 | 0.4080 | 0.033* | |
H13B | 0.6454 | 0.2729 | 0.3073 | 0.033* | |
C14 | 0.5508 (2) | 0.3906 (6) | 0.35226 (19) | 0.0260 (7) | |
H14A | 0.5037 | 0.4170 | 0.2930 | 0.031* | |
H14B | 0.5495 | 0.5336 | 0.3852 | 0.031* | |
C15 | 0.5212 (2) | 0.1684 (5) | 0.3865 (2) | 0.0286 (7) | |
H15A | 0.4565 | 0.1960 | 0.3815 | 0.034* | |
H15B | 0.5176 | 0.0286 | 0.3505 | 0.034* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0567 (16) | 0.0171 (10) | 0.0427 (14) | 0.0019 (10) | 0.0257 (13) | 0.0027 (10) |
C1 | 0.0309 (17) | 0.0144 (14) | 0.0364 (18) | −0.0027 (11) | 0.0207 (14) | −0.0017 (12) |
C2 | 0.0283 (17) | 0.0153 (14) | 0.0309 (17) | 0.0004 (12) | 0.0064 (14) | 0.0001 (11) |
C3 | 0.0346 (18) | 0.0190 (14) | 0.0289 (17) | 0.0012 (12) | 0.0121 (14) | 0.0044 (12) |
C4 | 0.0356 (18) | 0.0210 (14) | 0.0205 (15) | −0.0006 (12) | 0.0069 (14) | 0.0012 (11) |
C5 | 0.0329 (17) | 0.0199 (14) | 0.0197 (14) | −0.0007 (12) | 0.0067 (14) | −0.0025 (11) |
C6 | 0.0346 (18) | 0.0196 (14) | 0.0228 (15) | 0.0008 (13) | 0.0087 (14) | −0.0004 (11) |
C7 | 0.0287 (16) | 0.0247 (15) | 0.0286 (17) | 0.0002 (13) | 0.0076 (14) | −0.0013 (12) |
C8 | 0.0328 (17) | 0.0202 (14) | 0.0306 (17) | 0.0014 (12) | 0.0137 (14) | 0.0018 (11) |
C9 | 0.0278 (16) | 0.0168 (12) | 0.0279 (16) | 0.0000 (11) | 0.0104 (14) | 0.0021 (11) |
C10 | 0.0258 (16) | 0.0223 (14) | 0.0283 (17) | −0.0043 (12) | 0.0102 (14) | 0.0018 (11) |
C11 | 0.0320 (17) | 0.0225 (14) | 0.0245 (16) | −0.0068 (12) | 0.0110 (14) | −0.0044 (12) |
C12 | 0.0279 (16) | 0.0205 (13) | 0.0283 (16) | −0.0017 (12) | 0.0065 (13) | 0.0021 (13) |
C13 | 0.0337 (18) | 0.0204 (14) | 0.0270 (16) | −0.0021 (12) | 0.0131 (14) | −0.0002 (12) |
C14 | 0.0299 (17) | 0.0203 (13) | 0.0229 (15) | −0.0003 (12) | 0.0074 (13) | −0.0010 (11) |
C15 | 0.0346 (17) | 0.0200 (13) | 0.0298 (18) | −0.0067 (12) | 0.0130 (14) | −0.0044 (12) |
O1—C1 | 1.214 (3) | C8—H8A | 0.9900 |
C1—C2 | 1.502 (4) | C8—H8B | 0.9900 |
C1—C15 | 1.519 (4) | C9—C10 | 1.541 (4) |
C2—C3 | 1.519 (4) | C9—H9A | 0.9900 |
C2—H2A | 0.9900 | C9—H9B | 0.9900 |
C2—H2B | 0.9900 | C10—C11 | 1.538 (4) |
C3—C4 | 1.520 (4) | C10—H10A | 0.9900 |
C3—H3A | 0.9900 | C10—H10B | 0.9900 |
C3—H3B | 0.9900 | C11—C12 | 1.512 (4) |
C4—C5 | 1.526 (5) | C11—H11A | 0.9900 |
C4—H4A | 0.9900 | C11—H11B | 0.9900 |
C4—H4B | 0.9900 | C12—C13 | 1.518 (4) |
C5—C6 | 1.521 (4) | C12—H12A | 0.9900 |
C5—H5A | 0.9900 | C12—H12B | 0.9900 |
C5—H5B | 0.9900 | C13—C14 | 1.528 (4) |
C6—C7 | 1.517 (4) | C13—H13A | 0.9900 |
C6—H6A | 0.9900 | C13—H13B | 0.9900 |
C6—H6B | 0.9900 | C14—C15 | 1.534 (4) |
C7—C8 | 1.527 (4) | C14—H14A | 0.9900 |
C7—H7A | 0.9900 | C14—H14B | 0.9900 |
C7—H7B | 0.9900 | C15—H15A | 0.9900 |
C8—C9 | 1.514 (4) | C15—H15B | 0.9900 |
O1—C1—C2 | 122.2 (3) | H8A—C8—H8B | 107.6 |
O1—C1—C15 | 120.2 (3) | C8—C9—C10 | 113.5 (2) |
C2—C1—C15 | 117.5 (2) | C8—C9—H9A | 108.9 |
C1—C2—C3 | 115.8 (2) | C10—C9—H9A | 108.9 |
C1—C2—H2A | 108.3 | C8—C9—H9B | 108.9 |
C3—C2—H2A | 108.3 | C10—C9—H9B | 108.9 |
C1—C2—H2B | 108.3 | H9A—C9—H9B | 107.7 |
C3—C2—H2B | 108.3 | C11—C10—C9 | 114.3 (2) |
H2A—C2—H2B | 107.4 | C11—C10—H10A | 108.7 |
C2—C3—C4 | 111.7 (2) | C9—C10—H10A | 108.7 |
C2—C3—H3A | 109.3 | C11—C10—H10B | 108.7 |
C4—C3—H3A | 109.3 | C9—C10—H10B | 108.7 |
C2—C3—H3B | 109.3 | H10A—C10—H10B | 107.6 |
C4—C3—H3B | 109.3 | C12—C11—C10 | 113.1 (3) |
H3A—C3—H3B | 107.9 | C12—C11—H11A | 109.0 |
C3—C4—C5 | 113.6 (3) | C10—C11—H11A | 109.0 |
C3—C4—H4A | 108.8 | C12—C11—H11B | 109.0 |
C5—C4—H4A | 108.8 | C10—C11—H11B | 109.0 |
C3—C4—H4B | 108.8 | H11A—C11—H11B | 107.8 |
C5—C4—H4B | 108.8 | C11—C12—C13 | 114.2 (2) |
H4A—C4—H4B | 107.7 | C11—C12—H12A | 108.7 |
C6—C5—C4 | 113.4 (2) | C13—C12—H12A | 108.7 |
C6—C5—H5A | 108.9 | C11—C12—H12B | 108.7 |
C4—C5—H5A | 108.9 | C13—C12—H12B | 108.7 |
C6—C5—H5B | 108.9 | H12A—C12—H12B | 107.6 |
C4—C5—H5B | 108.9 | C12—C13—C14 | 113.0 (2) |
H5A—C5—H5B | 107.7 | C12—C13—H13A | 109.0 |
C7—C6—C5 | 114.7 (3) | C14—C13—H13A | 109.0 |
C7—C6—H6A | 108.6 | C12—C13—H13B | 109.0 |
C5—C6—H6A | 108.6 | C14—C13—H13B | 109.0 |
C7—C6—H6B | 108.6 | H13A—C13—H13B | 107.8 |
C5—C6—H6B | 108.6 | C13—C14—C15 | 113.4 (2) |
H6A—C6—H6B | 107.6 | C13—C14—H14A | 108.9 |
C6—C7—C8 | 116.1 (3) | C15—C14—H14A | 108.9 |
C6—C7—H7A | 108.3 | C13—C14—H14B | 108.9 |
C8—C7—H7A | 108.3 | C15—C14—H14B | 108.9 |
C6—C7—H7B | 108.3 | H14A—C14—H14B | 107.7 |
C8—C7—H7B | 108.3 | C1—C15—C14 | 115.1 (2) |
H7A—C7—H7B | 107.4 | C1—C15—H15A | 108.5 |
C9—C8—C7 | 114.7 (3) | C14—C15—H15A | 108.5 |
C9—C8—H8A | 108.6 | C1—C15—H15B | 108.5 |
C7—C8—H8A | 108.6 | C14—C15—H15B | 108.5 |
C9—C8—H8B | 108.6 | H15A—C15—H15B | 107.5 |
C7—C8—H8B | 108.6 | ||
O1—C1—C2—C3 | 6.5 (4) | C8—C9—C10—C11 | 70.2 (3) |
C15—C1—C2—C3 | −177.3 (3) | C9—C10—C11—C12 | 70.3 (3) |
C1—C2—C3—C4 | 144.6 (3) | C10—C11—C12—C13 | −154.0 (3) |
C2—C3—C4—C5 | −72.9 (3) | C11—C12—C13—C14 | 174.2 (3) |
C3—C4—C5—C6 | 168.1 (2) | C12—C13—C14—C15 | −157.6 (3) |
C4—C5—C6—C7 | 172.8 (3) | O1—C1—C15—C14 | −136.1 (3) |
C5—C6—C7—C8 | 52.9 (4) | C2—C1—C15—C14 | 47.6 (4) |
C6—C7—C8—C9 | 59.9 (4) | C13—C14—C15—C1 | 58.6 (3) |
C7—C8—C9—C10 | −178.9 (2) |
Experimental details
Crystal data | |
Chemical formula | C15H28O |
Mr | 224.37 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 90 |
a, b, c (Å) | 15.6634 (16), 5.5531 (5), 17.6928 (18) |
β (°) | 116.315 (8) |
V (Å3) | 1379.4 (3) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.48 |
Crystal size (mm) | 0.34 × 0.12 × 0.07 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2002) |
Tmin, Tmax | 0.853, 0.967 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5210, 2359, 2007 |
Rint | 0.052 |
(sin θ/λ)max (Å−1) | 0.600 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.059, 0.164, 1.08 |
No. of reflections | 2359 |
No. of parameters | 146 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.23 |
Computer programs: APEX2 (Bruker, 2006), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997), XSHELL (Bruker, 2004).
C15—C1—C2—C3 | −177.3 (3) | C8—C9—C10—C11 | 70.2 (3) |
C1—C2—C3—C4 | 144.6 (3) | C9—C10—C11—C12 | 70.3 (3) |
C2—C3—C4—C5 | −72.9 (3) | C10—C11—C12—C13 | −154.0 (3) |
C3—C4—C5—C6 | 168.1 (2) | C11—C12—C13—C14 | 174.2 (3) |
C4—C5—C6—C7 | 172.8 (3) | C12—C13—C14—C15 | −157.6 (3) |
C5—C6—C7—C8 | 52.9 (4) | C2—C1—C15—C14 | 47.6 (4) |
C6—C7—C8—C9 | 59.9 (4) | C13—C14—C15—C1 | 58.6 (3) |
C7—C8—C9—C10 | −178.9 (2) |
The conformations of cyclic ketones have been studied in solution by dynamic NMR spectroscopy (e.g. Anet et al., 1973, 1974) and in the solid state by X-ray crystallography (e.g. Groth, 1974, 1975, 1976, 1979). Completely ordered crystals were found for cyclodecanone at 113 K (Groth, 1976) and cycloundecanone at 108 K (Groth, 1974); the conformation in each case was based on a stable conformation of the parent hydrocarbon {[2323] (Pawar et al., 1998) or [335] (Pawar et al., 2006)}.
The ring skeletons for cyclododecanone (Groth, 1979) and cyclotetradecanone (Groth, 1975) matched those of cyclododecane ([3333]; Dunitz & Shearer, 1960) and cyclotetradecane ([3434]; Anet et al., 1972), but the crystals were disordered with respect to placement of the carbonyl groups. Groth (1979) concluded from preliminary studies of cyclotridecanone and cycloheptadecanone that the crystals were disordered, and the structures were not determined. Crystals of cyclopentadecanone [the title compound, (I)] and cyclohexadecanone were reported to be orthorhombic, and cell dimensions were given [incorrectly for compound (I); see below] by Groth (1976). The author concluded that the crystals were disordered, and attempts to solve both structures were unsuccessful.
Attempts to study the conformations of (I) in solution by low-temperature 1H and 13C NMR spectroscopy were inconclusive, and conformational assignments were not made (Cheng, 1973). Cyclopentadecanone phenylsemicarbazone has been reported to have a [3435] conformation in the solid state by X-ray diffraction (van den Hoek et al., 1979), and a [12345] conformation was found for the 2,4-dintrophenylhydrazone of (I) by the same method (Pawar et al., 2007). Strain energies have been calculated using MOLBUILD [Reference for software?] for several conformations of cyclopentadecane, and the [33333] conformation was predicted to be the most stable of those considered (Anet & Rawdah, 1978).
The molecular structure of (I) is shown in Fig. 1. The cyclopentadecane ring exists in the quinquangular [13353] conformation with corner positions at C atoms 3, 4, 7, 10 and 15, as described by the torsion angles in Table 1. The atoms of the C15 ring are coplanar to a mean deviation of 0.382 Å, with a maximum deviation of 0.603 (2) Å for atom C8. The O atom lies 1.646 (2) Å out of this plane, and the ketone plane (O1/C1/C2/C15) forms a dihedral angle of 66.12 (2)° with it.
While the unit cell has monoclinic symmetry, the lattice has a nearly C-centered orthorhombic metric, with the transformation (-1 0 0, 1 0 2, 0 1 0) yielding a cell with dimensions a = 15.663, b = 31.719 and c = 5.553 Å, and α = β = 90 and γ = 90.04°. Groth (1976) reported an orthorhombic cell at 113 K having dimensions 7.814 (4), 15.990 (8) and 5.589 (3) Å, noting that its cell volume (half ours) would yield Z = 2 and require disorder of the molecule. We note that the Groth cell has two of its dimensions near half those of the C-centered cell from our data. Examination of the packing in Fig. 2 suggests how the incorrect description of the unit-cell dimensions came about for this soft weakly-scattering compound. The centroid of the 15-membered ring is very near (3/4, 1/2, 1/2), and thus its equivalent by inversion through the center of the cell is related to it by an approximate translation of a/2, corresponding to the 7.81 Å ce l l dimension of the Groth cell. The vector from the origin to (1/2, 0, 1/2) is nearly orthogonal to our a axis, and corresponds to Groth's 15.99 Å ce l l dimension, half the 31.7 Å axis of the C-centered metric. The molecules related by the a/2 approximate translation would not overlap exactly, so would necessarily be disordered in the smaller cell, as pointed out by Groth (1976).
We noted splitting of spots in the diffraction pattern at nearer ambient temperatures, hinting that crystals of (I) are twinned. The twinning is a twofold rotation about [100], bringing the [101] and [001] vectors into near coincidence. At T = 150 K, these two distances differ by 0.6%, but we found that lowering the temperature to 90 K caused anisotropic shrinkage of the cell, making the [101] distance equal to the c axis and causing the split spots to coalesce (Fronczek & Fox, 2007). Thus, we measured diffraction data at 90 K, and were able to treat the twin as essentially perfectly pseudo-merohedral. Introducing one TWIN and one BASF command into the refinement in SHELXL97 (Sheldrick, 1997) lowered the R value from 0.296 to 0.059.