The title compound, C
30H
18N
8·2H
2O, is a solvate of 2,3,7,8-tetra(pyridin-2-yl)pyrazino[2,3-
g]quinoxaline and, like the latter, is crystallographically centrosymmetric. The pyrazine ring makes dihedral angles of 54.95 (6) and 28.09 (6)° with the two independent pyridine rings. The two pyridine rings are inclined to one another by 56.77 (7)°, with their N atoms facing each other. In the crystal structure, adjacent molecules are linked by O—H
N hydrogen bonds, forming a wide ribbon-like structure extending in the
ac plane.
Supporting information
CCDC reference: 627784
Key indicators
- Single-crystal X-ray study
- T = 153 K
- Mean (C-C) = 0.002 Å
- R factor = 0.032
- wR factor = 0.085
- Data-to-parameter ratio = 11.3
checkCIF/PLATON results
No syntax errors found
Alert level A
PLAT029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ....... 0.94
| Author Response: ...For the triclinic system the Stoe IPDS-I diffractometer
only allows one to collect ca. 93% of the available data in the Ewald
sphere. This, however, does not have any significant effect on the
final molecular dimensions of compound (II). The bond distances and
angles are in fact more precise than those for the room temperature
study of compound (I), see
Fang, Y.-Y., Guo, Y.-M., Du, M., Liu, H., Leng, X.-B. & Zhang, R.-H.
(2001). Acta Cryst. E57, o380-o382.
|
Alert level C
REFLT03_ALERT_3_C Reflection count < 95% complete
From the CIF: _diffrn_reflns_theta_max 25.25
From the CIF: _diffrn_reflns_theta_full 25.25
From the CIF: _reflns_number_total 2142
TEST2: Reflns within _diffrn_reflns_theta_max
Count of symmetry unique reflns 2284
Completeness (_total/calc) 93.78%
PLAT022_ALERT_3_C Ratio Unique / Expected Reflections too Low .... 0.94
1 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
3 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: EXPOSE in IPDS-I (Stoe & Cie, 2000); cell refinement: CELL in IPDS-I (Stoe & Cie, 2000); data reduction: INTEGRATE in IPDS-I (Stoe & Cie, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97.
Crystal data top
C30H18N8·2(H2O) | Z = 1 |
Mr = 526.56 | F(000) = 274 |
Triclinic, P1 | Dx = 1.386 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 5.9162 (8) Å | Cell parameters from 3947 reflections |
b = 8.5485 (12) Å | θ = 2.2–25.1° |
c = 13.6553 (18) Å | µ = 0.09 mm−1 |
α = 76.734 (16)° | T = 153 K |
β = 82.755 (16)° | Plate, yellow |
γ = 70.068 (15)° | 0.50 × 0.50 × 0.15 mm |
V = 631.05 (15) Å3 | |
Data collection top
STOE IPDS diffractometer | 1637 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.024 |
Graphite monochromator | θmax = 25.3°, θmin = 2.6° |
φ scans | h = −7→7 |
4660 measured reflections | k = −10→10 |
2142 independent reflections | l = −16→16 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.95 | w = 1/[σ2(Fo2) + (0.0575P)2] where P = (Fo2 + 2Fc2)/3 |
2142 reflections | (Δ/σ)max < 0.001 |
189 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.3982 (2) | −0.17191 (14) | 0.12732 (8) | 0.0305 (3) | |
N2 | 0.63908 (19) | −0.08701 (13) | 0.31244 (7) | 0.0249 (3) | |
N3 | 0.3180 (2) | −0.22470 (13) | 0.44470 (7) | 0.0257 (3) | |
N4 | 0.4720 (2) | −0.50219 (13) | 0.27432 (8) | 0.0289 (3) | |
C1 | 0.4352 (3) | −0.1891 (2) | 0.03072 (10) | 0.0388 (4) | |
H1 | 0.2990 | −0.1596 | −0.0081 | 0.047* | |
C2 | 0.6600 (3) | −0.2471 (2) | −0.01473 (10) | 0.0447 (4) | |
H2 | 0.6777 | −0.2614 | −0.0825 | 0.054* | |
C3 | 0.8595 (3) | −0.28406 (19) | 0.03929 (10) | 0.0383 (4) | |
H3 | 1.0169 | −0.3231 | 0.0091 | 0.046* | |
C4 | 0.8268 (3) | −0.26347 (17) | 0.13820 (9) | 0.0296 (3) | |
H4 | 0.9608 | −0.2848 | 0.1768 | 0.036* | |
C5 | 0.5945 (2) | −0.21110 (16) | 0.17945 (9) | 0.0246 (3) | |
C6 | 0.5448 (2) | −0.18802 (15) | 0.28627 (9) | 0.0233 (3) | |
C7 | 0.3908 (2) | −0.26796 (15) | 0.35724 (8) | 0.0230 (3) | |
C8 | 0.3189 (2) | −0.40686 (15) | 0.33565 (8) | 0.0239 (3) | |
C9 | 0.1098 (2) | −0.43697 (16) | 0.37983 (9) | 0.0278 (3) | |
H9 | 0.0093 | −0.3698 | 0.4251 | 0.033* | |
C10 | 0.0501 (3) | −0.56738 (17) | 0.35664 (10) | 0.0326 (3) | |
H10 | −0.0930 | −0.5903 | 0.3852 | 0.039* | |
C11 | 0.2021 (3) | −0.66308 (17) | 0.29142 (10) | 0.0344 (3) | |
H11 | 0.1639 | −0.7511 | 0.2727 | 0.041* | |
C12 | 0.4114 (3) | −0.62786 (17) | 0.25399 (10) | 0.0325 (3) | |
H12 | 0.5185 | −0.6971 | 0.2112 | 0.039* | |
C13 | 0.5774 (2) | −0.04828 (15) | 0.40704 (8) | 0.0230 (3) | |
C14 | 0.4023 (2) | −0.10927 (15) | 0.47097 (9) | 0.0235 (3) | |
C15 | 0.3249 (2) | −0.05848 (16) | 0.56276 (9) | 0.0254 (3) | |
H15 | 0.2056 | −0.0968 | 0.6046 | 0.031* | |
O1W | −0.0318 (3) | 0.08354 (16) | 0.18967 (10) | 0.0515 (3) | |
H1W | 0.098 (5) | 0.000 (3) | 0.1658 (17) | 0.089 (7)* | |
H2W | −0.126 (4) | 0.029 (3) | 0.2239 (16) | 0.064 (6)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0365 (7) | 0.0371 (6) | 0.0238 (5) | −0.0188 (5) | −0.0009 (5) | −0.0071 (5) |
N2 | 0.0289 (6) | 0.0282 (6) | 0.0208 (5) | −0.0127 (5) | 0.0036 (4) | −0.0088 (4) |
N3 | 0.0319 (6) | 0.0287 (6) | 0.0218 (5) | −0.0154 (5) | 0.0015 (4) | −0.0081 (4) |
N4 | 0.0347 (6) | 0.0288 (6) | 0.0271 (6) | −0.0129 (5) | 0.0000 (5) | −0.0100 (4) |
C1 | 0.0497 (9) | 0.0546 (9) | 0.0239 (7) | −0.0305 (8) | −0.0042 (6) | −0.0083 (6) |
C2 | 0.0651 (11) | 0.0626 (10) | 0.0230 (7) | −0.0382 (9) | 0.0078 (7) | −0.0193 (7) |
C3 | 0.0450 (9) | 0.0468 (8) | 0.0323 (7) | −0.0246 (7) | 0.0142 (6) | −0.0198 (6) |
C4 | 0.0340 (7) | 0.0344 (7) | 0.0257 (6) | −0.0165 (6) | 0.0037 (5) | −0.0107 (5) |
C5 | 0.0332 (7) | 0.0254 (6) | 0.0205 (6) | −0.0156 (6) | 0.0020 (5) | −0.0075 (5) |
C6 | 0.0255 (7) | 0.0240 (6) | 0.0221 (6) | −0.0089 (5) | −0.0001 (5) | −0.0072 (5) |
C7 | 0.0261 (6) | 0.0256 (6) | 0.0198 (6) | −0.0104 (5) | −0.0003 (5) | −0.0066 (5) |
C8 | 0.0309 (7) | 0.0252 (6) | 0.0179 (6) | −0.0113 (6) | −0.0032 (5) | −0.0041 (5) |
C9 | 0.0329 (7) | 0.0302 (7) | 0.0241 (6) | −0.0147 (6) | −0.0008 (5) | −0.0061 (5) |
C10 | 0.0386 (8) | 0.0357 (7) | 0.0307 (7) | −0.0220 (7) | −0.0043 (6) | −0.0034 (6) |
C11 | 0.0495 (9) | 0.0280 (7) | 0.0336 (7) | −0.0199 (7) | −0.0096 (6) | −0.0067 (6) |
C12 | 0.0414 (8) | 0.0286 (7) | 0.0317 (7) | −0.0119 (6) | −0.0029 (6) | −0.0124 (6) |
C13 | 0.0272 (7) | 0.0247 (6) | 0.0186 (6) | −0.0099 (5) | 0.0021 (5) | −0.0066 (5) |
C14 | 0.0280 (7) | 0.0235 (6) | 0.0214 (6) | −0.0106 (5) | −0.0016 (5) | −0.0057 (5) |
C15 | 0.0292 (7) | 0.0302 (6) | 0.0219 (6) | −0.0166 (6) | 0.0052 (5) | −0.0077 (5) |
O1W | 0.0538 (8) | 0.0440 (6) | 0.0638 (8) | −0.0278 (6) | 0.0258 (6) | −0.0215 (6) |
Geometric parameters (Å, º) top
N1—C5 | 1.3421 (17) | C6—C7 | 1.4612 (18) |
N1—C1 | 1.3430 (16) | C7—C8 | 1.4881 (18) |
N2—C6 | 1.3055 (16) | C8—C9 | 1.3849 (19) |
N2—C13 | 1.3808 (15) | C9—C10 | 1.3879 (18) |
N3—C7 | 1.3087 (15) | C9—H9 | 0.9500 |
N3—C14 | 1.3763 (16) | C10—C11 | 1.379 (2) |
N4—C12 | 1.3360 (17) | C10—H10 | 0.9500 |
N4—C8 | 1.3435 (16) | C11—C12 | 1.381 (2) |
C1—C2 | 1.372 (2) | C11—H11 | 0.9500 |
C1—H1 | 0.9500 | C12—H12 | 0.9500 |
C2—C3 | 1.377 (2) | C13—C15i | 1.3890 (18) |
C2—H2 | 0.9500 | C13—C14 | 1.4279 (18) |
C3—C4 | 1.3829 (18) | C14—C15 | 1.3923 (17) |
C3—H3 | 0.9500 | C15—C13i | 1.3890 (18) |
C4—C5 | 1.3812 (19) | C15—H15 | 0.9500 |
C4—H4 | 0.9500 | O1W—H1W | 0.94 (3) |
C5—C6 | 1.4957 (16) | O1W—H2W | 0.87 (2) |
| | | |
C5—N1—C1 | 116.86 (12) | N4—C8—C9 | 123.10 (12) |
C6—N2—C13 | 118.39 (11) | N4—C8—C7 | 115.95 (11) |
C7—N3—C14 | 118.27 (11) | C9—C8—C7 | 120.91 (11) |
C12—N4—C8 | 117.00 (12) | C8—C9—C10 | 118.62 (12) |
N1—C1—C2 | 123.31 (13) | C8—C9—H9 | 120.7 |
N1—C1—H1 | 118.3 | C10—C9—H9 | 120.7 |
C2—C1—H1 | 118.3 | C11—C10—C9 | 118.87 (13) |
C1—C2—C3 | 119.08 (12) | C11—C10—H10 | 120.6 |
C1—C2—H2 | 120.5 | C9—C10—H10 | 120.6 |
C3—C2—H2 | 120.5 | C10—C11—C12 | 118.42 (12) |
C2—C3—C4 | 118.86 (14) | C10—C11—H11 | 120.8 |
C2—C3—H3 | 120.6 | C12—C11—H11 | 120.8 |
C4—C3—H3 | 120.6 | N4—C12—C11 | 123.91 (12) |
C5—C4—C3 | 118.35 (13) | N4—C12—H12 | 118.0 |
C5—C4—H4 | 120.8 | C11—C12—H12 | 118.0 |
C3—C4—H4 | 120.8 | N2—C13—C15i | 119.79 (11) |
N1—C5—C4 | 123.45 (11) | N2—C13—C14 | 119.94 (11) |
N1—C5—C6 | 115.06 (11) | C15i—C13—C14 | 120.16 (11) |
C4—C5—C6 | 121.45 (11) | N3—C14—C15 | 119.63 (11) |
N2—C6—C7 | 121.16 (10) | N3—C14—C13 | 120.33 (11) |
N2—C6—C5 | 116.57 (11) | C15—C14—C13 | 119.97 (11) |
C7—C6—C5 | 122.22 (11) | C13i—C15—C14 | 119.86 (12) |
N3—C7—C6 | 121.10 (11) | C13i—C15—H15 | 120.1 |
N3—C7—C8 | 117.05 (11) | C14—C15—H15 | 120.1 |
C6—C7—C8 | 121.79 (10) | H1W—O1W—H2W | 105 (2) |
| | | |
C5—N1—C1—C2 | 1.4 (2) | C12—N4—C8—C7 | 179.90 (10) |
N1—C1—C2—C3 | −2.5 (2) | N3—C7—C8—N4 | −150.08 (11) |
C1—C2—C3—C4 | 0.8 (2) | C6—C7—C8—N4 | 27.22 (16) |
C2—C3—C4—C5 | 1.8 (2) | N3—C7—C8—C9 | 27.82 (17) |
C1—N1—C5—C4 | 1.42 (19) | C6—C7—C8—C9 | −154.89 (11) |
C1—N1—C5—C6 | 179.26 (11) | N4—C8—C9—C10 | −2.68 (18) |
C3—C4—C5—N1 | −3.0 (2) | C7—C8—C9—C10 | 179.58 (11) |
C3—C4—C5—C6 | 179.26 (12) | C8—C9—C10—C11 | 0.66 (19) |
C13—N2—C6—C7 | −4.14 (17) | C9—C10—C11—C12 | 1.75 (19) |
C13—N2—C6—C5 | 173.37 (10) | C8—N4—C12—C11 | 0.58 (19) |
N1—C5—C6—N2 | −123.08 (13) | C10—C11—C12—N4 | −2.5 (2) |
C4—C5—C6—N2 | 54.81 (16) | C6—N2—C13—C15i | 179.84 (12) |
N1—C5—C6—C7 | 54.40 (16) | C6—N2—C13—C14 | −4.10 (16) |
C4—C5—C6—C7 | −127.71 (14) | C7—N3—C14—C15 | 178.89 (11) |
C14—N3—C7—C6 | −3.95 (17) | C7—N3—C14—C13 | −4.31 (17) |
C14—N3—C7—C8 | 173.36 (10) | N2—C13—C14—N3 | 8.68 (17) |
N2—C6—C7—N3 | 8.64 (18) | C15i—C13—C14—N3 | −175.27 (11) |
C5—C6—C7—N3 | −168.72 (11) | N2—C13—C14—C15 | −174.53 (11) |
N2—C6—C7—C8 | −168.54 (11) | C15i—C13—C14—C15 | 1.52 (19) |
C5—C6—C7—C8 | 14.09 (17) | N3—C14—C15—C13i | 175.30 (11) |
C12—N4—C8—C9 | 2.05 (17) | C13—C14—C15—C13i | −1.51 (19) |
Symmetry code: (i) −x+1, −y, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···N1 | 0.94 (3) | 1.98 (3) | 2.9127 (18) | 173 (2) |
O1W—H2W···N2ii | 0.87 (2) | 2.08 (2) | 2.9526 (17) | 175.5 (18) |
Symmetry code: (ii) x−1, y, z. |