Supporting information
CCDC references: 1031987; 1031986; 1031985
Benzimidazole derivatives have a myriad of pharmacological uses, including as inhibitors of serotonin-activated neurotransmission (López-Rodríguez et al., 1999) and antiviral agents (Varala et al., 2007). They are also used in antiarrhythmic, antihistamine, antiulcer, anticancer, fungicidal, and anthelmintical drugs (Horton et al., 2003). The benzimidazole rings and/or their substitutents have a propensity to intercalate in DNA (Perin et al., 2014) and to form π-aromatic interactions with protein residues. For example, interactions with a phenylalanine residue accompany binding of benzimidazolone inhibitors in the active site of the BRPF1 bromodomain (Demont et al., 2014). π–π and C—H···π interactions play a role in the binding of benzimidazole-based hepatitus C virus inhibitors (Patel et al., 2008); antianxiety drugs (Hayashi et al., 2009); multi-target EGFR, VEGFR-2 and PDGFR kinase inhibitors (Li et al., 2011); and serotonin receptor antagonists (de la Fuente et al., 2010). Furan-substituted benzimidazole derivatives are of particular interest. The 2-furan substituent binds in a deep hydrophobic pocket of hepatitis C virus NS5B polymerase, leading to greater activity than the corresponding pyridyl derivative (Patel et al., 2008). 2-(Furan-2-yl)-1H-benzimidazole (trade name fuberidazole) is a potent fungicide (Matolcsy et al., 1989; MacBean, 2013). Furan and thiophene also exhibit DNA intercalating abilities (Trent et al., 1996; Chai et al., 2014; Mallena et al., 2004; Laughton et al., 1996).
In addition to their biochemical importance, benzimidazoles have been studied because of their potential use as proton-transfer agents in polymeric electrolyte membranes (Pangon et al., 2011; Chirachanchai et al., 2011), proton-conducting solids (Rachocki et al., 2014), and in crystal engineering water-free proton-transfer systems (Totsatitpaisan et al., 2008). Of particular interest is the structural reorganization that occurs upon protonation (Munch et al., 2001). Benzimidazole itself crystallizes in two forms, each exhibiting N—H···N hydrogen-bonded chains. However, the more thermodynamically stable α form (orthorhombic, Pna21) exhibits C—H···π interactions with an H···benzene-centroid distance of 2.64 Å (Dik-Edixhoven et al., 1973; Escande & Galigné, 1974; Stibrany et al., 2001), whereas the β form (orthorhombic, Pccn) exhibits π–π stacking with an interplanar distance of 3.418 (8) Å (Krawczyk & Gdaniec, 2005). An examination of reported solid-state structures of 2-substituted and 1,2-disubstituted benzimidazoles reveals that both C—H···π and π–π aromatic interactions are common (for examples, see: Geiger et al., 2014; Geiger & Isaac, 2014; El Ghozlani et al., 2014; Yeong et al., 2013; Fathima et al., 2013; Krishnamurthy et al., 2013).
Although C—H···π and π–π aromatic interactions play an important role in biochemical systems (McGaughey et al., 1998) and in organic reactions (Nishio, 2005) and these interactions are especially common for benzimidazole and furan substrates, there is little in the literature regarding the optimal benzimidazole and/or furan geometries of the interacting moeties or the strengths of the interactions. We report herein the structures of 2-(furan-2-yl)-1-[(furan-2-yl)methyl]-1H-benzimidazole, (I), its hydrochloride monohydrate salt, 2-(furan-2-yl)-1-[(furan-2-yl)methyl]-1H-benzimidazol-3-ium chloride monohydrate, (II), and the hydrobromide salt 5,6-dimethyl-2-(furan-2-yl)-1-(furan-2-ylmethyl)-1H-benzimidazol-3-ium bromide, (III). In addition to complementing the previously reported structural studies on 1,3-difurfurylbenzimidizolium chloride monohydrate (Akkurt et al., 2009) and 2-(furan-2-yl)-1,3-bis(furan-2-ylmethyl)-1H-benzimidazol-3-ium chloride monohydrate (Geiger et al., 2012), they provide an opportunity for exploring the preferred 2-furan-substituted benzimidazole stacking and C—H···π(furan) interactions. Toward that end, we have calculated interaction energies using density functional (DFT) theory. Our results are compared to those reported for other aromatic systems (Sherrill et al., 2009; Ran & Wong, 2006; Grimme, 2008; Takahashi et al., 2010; Sánchez-García & Jansen, 2012).
A solution of o-phenylenediamine (0.5000 g, 4.6 mmol) and 2-furaldehyde (0.84 ml) in ethanol (50 ml) was stirred for 2 h at room temperature. The solvent was removed by rotary evaporation and the product was isolated by silica-gel column chromatography (ethyl acetate–hexane, 1:2 v/v) (yield 80%). 1H NMR (CDCl3, 400 MHz): δ 8.62 (1H, d), 8.03 (1H, d), 7.82 (1H, d), 7.71 (1H, m), 7.50 (2H, m), 7.34 (1H, d), 6.78 (1H, d), 6.46 (1H, d), 6.32 (1H, m), 5.88 (2H, s). 13C NMR (CDCl3): δ 149.2, 146.9, 144.0, 137.4, 132.6, 130.6, 127.3, 126.4, 119.8, 113.6, 113.4, 112.8, 110.5, 46.5.
Single crystals of (I) suitable for X-ray analysis were obtained by slow diffusion of hexane into an ethanol solution. Single crystals of (II) were obtained in the same way, except a few drops of concentrated HCl were added to the ethanol solution.
A solution of 4,5-dimethyl-1,2-phenylenediamine (0.5440 g, 4.0 mmol) and 2-furaldehyde (0.67 ml) in ethanol (30 ml) was stirred at room temperature under nitrogen for 24 h. The solvent was removed and the product was purified by silica-gel column chromatography (ethyl acetate–hexane, 1:2 v/v). 1H NMR (CDCl3, 400 MHz): δ 7.62 (1H, d), 7.54 (1H, s), 7.33 (1H, d), 7.29 (1H, s), 7.14 (1H, d), 6.58 (1H, m), 6.28 (1H, d), 6.20 (1H, m), 5.59 (2H, s), 2.36 (3H, s), 2.40 (3H, s). 13C NMR (CDCl3): δ 150.0, 145.8, 143.6, 143.0, 142.5, 141.8, 134.0, 132.2, 131.8, 120.0, 112.0, 111.8, 110.3, 110.0, 108.0, 41.8, 20.4, 20.0.
Single crystals of (III) suitable for X-ray analysis were obtained by slow diffusion of hexane into an ethanol solution containing a few drops of concentrated HBr.
Crystal data, data collection and structure refinement details are summarized in Table 1. For (I), (II) and (III), all H atoms were located in difference Fourier maps. Except for the methyl H atoms of (III), H atoms bonded to C atoms were refined using a riding model, with C—H = 0.95 Å and Uiso(H) = 1.2Ueq(C). The methyl H atoms were refined using a riding model, with C—H = 0.98 Å and Uiso(H) = 1.5Ueq(C). All H atoms bonded to N or O atoms were refined freely, including isotropic displacement parameters.
In the early stages of the refinement of (I), it was discovered that the 2-(furan-2-yl)benzimidazole moiety exhibited approximately twofold disorder, pivoting on the methylene group of the furan-2-ylmethyl substituent. The disorder was modeled using the metrics of the major component. For the minor component, similarity restraints were used for the bond distances and anisotropic displacement parameters were constrained to those of the major component. The occupancies refined to 0.7358 (19):0.2642 (19).
Compounds (II) and (III) exhibited approximately twofold disorder in the 2-furan substituent. For each, the minor component was modeled using the metrics of the major component. Similarity restraints were used for the bond distances of the minor components. For (II), anisotropic displacement parameters of the disordered methylfuran units were restrained to be more isotropic. For (III), the anisotropic displacement parameters were constrained to those of the major component. The occupancies refined to 0.59 (2):0.41 (2) for (II) and to 0.608 (9):0.392 (9) for (III).
All calculations were performed using the Spartan '14 (Wavefunction, 2014) package. All results refer to systems in the gas phase. Energy-minimized structures were obtained using M06-2X density functionals (Zhao & Truhlar, 2008) with a 6-311+G(d,p) basis set. In the calculation of interaction energies, M06, M06-2X, and B3LYP functionals were used along with a series of basis sets in an effort to choose a combination of functional and basis set that gave good values with a minimum of computational expense. With the exception of the B3LYP functional which gave an unfavorable interaction energy when corrected for BSSE, all of the combinations examined gave similar results. The poor results obtained for interaction energies using the B3LYP functional has been observed for other systems involving dispersion or hydrogen-bonding interactions (Walker et al., 2013). The M06-2X/6-31+G(d) combination of functional and basis set has been shown to reproduce interaction energies obtained using a more rigorous approach at a reduced computational cost (Wheeler & Bloom, 2014; Wheeler & Houk, 2008; Wheeler et al., 2010; Wells et al., 2013; Walker et al., 2013). Interaction energies were corrected for basis set superposition energy (BSSE) using the counterpoise (CP) method. Because bond distances involving H atoms that are obtained from X-ray analysis are systematically short, calculations employed the crystal coordinates for nonhydrogen atoms and optimized [M06-2X/6-31+G(d)] coordinates for hydrogen atoms. For (II) and (III), the hydrogen halide and water of hydration were not included in the calculation.
The molecular structure of (I) is shown in Fig. 1. The approximately twofold rotational disorder observed for the 2-(furan-2-yl)benzimidazole ring system has precedence (Geiger & Isaac, 2014). The benzimidazole is almost planar with the largest deviation for atom C5 [0.033 (4) Å] in the major component and for atom C54 [0.034 (14) Å] in the minor component. The plane of the furan substituent is canted 12.7 (3)° from that of the benzimidazole ring system in the major component and by 15.2 (8)° in the minor component.
As seen in Fig. 2, the extended structure exhibits chains parallel to the c axis. There are two sets of stacking interactions involving molecules related by inversion centers. The first, hereafter referred to as (Ia) and shown in the center of Fig. 2, exhibits a π–π aromatic interaction between furan substituents. In the descriptions that follow, Fn, MeFn, Im and Bz refer to furan, furan-2-ylmethyl, imidazole and benzene rings, respectively. The Cg(Fn)···Cg(Fn)i distance is 3.631 (3) Å (for symmetry codes, see Fig. 2). The pair of molecules also displays two C10—H10···π(MeFn) aromatic interactions [H10···Cg(MeFn)i = 3.27 Å and C10—H10···Cg(MeFn)i = 121°]. In the minor contributor to the disorder model, the corresponding interactions are Cg(Bz)···Cg(Bz)i = 3.542 (7) Å, with two C54—H54···π(MeFn) interactions [H54···Cg(MeFn)i = 2.95 Å and C54—H54···Cg(MeFn)i = 130°]. The second stacking interaction, shown at the sides of Fig. 2 and hereafter referred to as (Ib), involves symmetry-related benzimidazole moieties, which are laterally (i.e. along the minor molecular axis) shifted from one another. The intermolecular Cg(Im)···Cg(Bz) distance is 3.9601 (5) Å. Projections showing the stacking of the rings are shown in Fig. 3. Two additional (shorter) C—H···π interactions between chains join (Ia) to (Ib) to form the extended network [H3···Cg(Fn)v = 2.96 Å and C3—H3···Cg(Fn)v = 137°; H14i···Cg(Bz)iv = 2.96 Å and C14i—H14i···Cg(Bz)iv = 144°].
Fig. 4 shows the molecular structure of (II). Protonation of the imidazole results in only minor structural changes. The protonated benzimidazole is essentially planar, with the maximum deviation being for atom C7 [0.016 (3) Å]. The major and minor contributors to the disordered 2-furan substituent form angles of 2.7 (13) and 31.2 (15)°, respectively, to the benzimidazole mean plane. The extended structure of (II) is shown in Fig. 5. The packing of the ions is dominated by hydrogen bonding involving the protonated amine, water, and chloride ion, resulting in chains that run parallel to the a axis (Table 2). The benzimidazole cations are stacked in a shifted head-to-head arrangement (see Fig. 3) with primary stacking interactions involving the benzimidazole rings of one molecule with the 2-furan substituent and imidazole ring of another molecule translated along the a axis. The intermolecular Cg(Im)···Cg(Bz)i distance is 3.7615 (5) Å and the Cg(Im)···Cg(Fn)ii distance is 3.7631 (4) Å (for symmetry codes, see Fig. 5).
The molecular structure of (III) is shown in Fig. 6. The corresponding bond distances and angles agree well with those found for (II). The greatest deviation from planarity in the benzimidazole ring system occurs for atom C7 [0.0104 (16) Å]. The plane of the 2-furan substituent is canted from the that of benzimidazole by 5(2) and 5(4)° for the major and minor contributors to the disorder, respectively. Fig. 7 shows a packing diagram for (III). N—H···Br hydrogen bonding involves discrete cation–anion pairs (Table 3). Benzimidazolium cations related by inversion centers are π-stacked and have a slipped head-to-tail arrangment of the benzimidazole moiety (see Fig. 3). Atom C7 is located roughly over Cg(Bz) with C7···Cg(Bz)i = 3.443 (2) Å.
As a result of the approximately twofold disorder exhibited by the benzimidazole ring system in (I), in addition to the π(Fn)–π(Fn) stacking, π(Bz)–π(Bz) stacking [Cg(Bz)···Cg(Bz)i = 3.542 (7) Å] and π(Bz)–π(Fn) stacking [Cg(Bz)···Cg(Fn)i = 3.543 (7) Å] interactions involving the minor contributors to the disorder are present. The three compounds reported thus provide an opportunity to explore π(Fn)···π(Fn), π(Bz)···π(Bz), and π(Fn)···π(Bz) interactions. Density functional theory (DFT) calculations were performed using the atomic coordinates of heavy atoms obtained in the crystallographic analysis and optimized H-atom positions. The results are shown in Table 4.
In an effort to deconvolute the C—H···π and π–π interaction energies for (Ia), calculations were also performed on pairs of molecules in which the 1-(furan-2-ylmethyl) substituent was replaced by an H atom. Assuming that the difference in interaction energies corresponds to the two Fn–Fn C—H···π interactions present in (Ia), the value obtained for each C—H···π interaction is -9.4 kJ mol-1. An independent calculation involving two furan molecules in the orientation observed in (Ia) yields a BSSE-corrected value of -7.7 kJ mol-1. These values agree well with the -9.8 kJ mol-1 obtained for an optimized ethyne–furan interaction energy (Sánchez-García & Jansen, 2012). A similar analysis using the minor contributor to the disorder in (Ia) yields a value of -8.8 kJ mol-1 for the Bz–Bz C—H···π interaction, which is in good agrement with the value of -9.4 kJ mol-1 reported for the interaction energy of a `T-shaped' benzene dimer (Sherrill et al., 2009).
The results suggest that π(Fn)–π(Fn) is more favorable than π(Bz)–π(Bz) or π(Fn)–π(Bz) and support the proposition that noncovalent interactions involving aromatic rings have an electrostatic component (Wheeler & Bloom, 2014). In benzimidazole, the presence of the imidazole `substitutent' on the benzene ring results in an unsymmetrical electron distribution with the bridgehead C atoms exhibiting postive character. Further evidence comes from interaction (Ib), in which the molecular dipoles of paired molecules are aligned to provide favorable electrostatic interaction. [The calculated dipole moment, M06-2X/6-311+G(d,p), in the energy-minimized structure is 3.6 Debye.]
The interaction energies for the benzimidazoles in the orientations found in (II) and (III) were calculated using optimized H-atom coordinates and removal of the hydrogen chloride and water for (II), and removal of the hydrogen bromide for (III). The results suggest that an increase in the number of aromatic rings involved in the interaction results in a more favorable interaction. This observation is consistent with that found for a series of polynuclear aromatic molecules where the interaction energies for sandwiched pairs of benzene, napthalene, anthracene and tetracene were found to be -11, -28, -48 and -68 kJ mol-1, respectively (Grimme, 2008). For comparison, the N—H···OH2 hydrogen-bond energy was found to be 125.6 and 122.4 kJ mol-1 using the M06-2X and B3LYP functionals, respectively, with a 6-31+G(d) basis set.
A comparison of the interaction energies of (Ia), (Ib), (II) and (III) suggests that the strength of the interaction depends on the relative orientation of the molecules with respect to shift along the molecular axes. In order to further explore the effect of orientation of the paired 2-(furan-2-yl)benzimidazole molecules with respect to each other, three parameters were examined, viz. interplanar spacing, shift (along the major molecular axis) and lateral shift (along the minor molecular axis). Fig. 8(a) shows a plot of the relative energy for pairs of molecules as a function of the interplanar spacing, Fig. 8(b) shows the effect of slip distance on the energy of the pairs of molecules, and the effect of lateral shift on the energy is shown in Fig. 8(c). Unsubstituted benzimidazole crystallizes in at least two different forms in which molecules are joined in hydrogen-bonded chains. In the thermodynamically more stable α crystalline form of benzimidazole (Pna21), pairs of molecules exhibit C—H···Cg(Bz) = 2.639 (16) Å π interactions (Stibrany et al., 2001). In the β form (Pccn), pairs of molecules related by inversion centers display a Cg(Im)···Cg(Im) = 3.4838 (11) Å distance, with a shift along the major axis of 0.59 Å, and a lateral shift of zero (Krawczyk & Gdaniec, 2005).
Although there has been much computational work in the area of noncovalent interactions, most studies have involved artificial systems (Wheeler & Bloom, 2014). A notable exception is the determination of interaction energies between cytosine and aspartic or glutamic acids (Wells et al., 2013). The results reported herein are for a real system that is of inherent interest in diverse areas of inquiry. The calculated interaction energies of the 2-(furanyl)-1-(furan-2-ylmethyl)-substituted benzimidazoles are strongly correlated with interplanar spacing and relative orientation of the interacting molecules. Although the π–π interaction energy is less favorable in (Ia) than in (Ib), the additional interactions between the furan rings may help stabilize (Ia), leading to an overall more favorable interaction.
For all compounds, data collection: APEX2 (Bruker, 2013); cell refinement: APEX2 (Bruker, 2013); data reduction: SAINT (Bruker, 2013); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009) and Mercury (Macrae et al., 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
C16H12N2O2 | F(000) = 552 |
Mr = 264.28 | Dx = 1.381 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 9.3916 (17) Å | Cell parameters from 2501 reflections |
b = 12.398 (2) Å | θ = 2.5–24.7° |
c = 11.313 (2) Å | µ = 0.09 mm−1 |
β = 105.216 (6)° | T = 200 K |
V = 1271.1 (4) Å3 | Prism, clear orange |
Z = 4 | 0.60 × 0.40 × 0.40 mm |
Bruker SMART X2S benchtop diffractometer | 2241 independent reflections |
Radiation source: sealed microfocus tube | 1764 reflections with I > 2σ(I) |
Doubly curved silicon crystal monochromator | Rint = 0.029 |
Detector resolution: 8.3330 pixels mm-1 | θmax = 25.1°, θmin = 2.5° |
ω scans | h = −11→11 |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −13→14 |
Tmin = 0.89, Tmax = 0.96 | l = −12→13 |
8001 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0363P)2 + 0.3973P] where P = (Fo2 + 2Fc2)/3 |
2241 reflections | (Δ/σ)max < 0.001 |
227 parameters | Δρmax = 0.13 e Å−3 |
25 restraints | Δρmin = −0.18 e Å−3 |
C16H12N2O2 | V = 1271.1 (4) Å3 |
Mr = 264.28 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.3916 (17) Å | µ = 0.09 mm−1 |
b = 12.398 (2) Å | T = 200 K |
c = 11.313 (2) Å | 0.60 × 0.40 × 0.40 mm |
β = 105.216 (6)° |
Bruker SMART X2S benchtop diffractometer | 2241 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | 1764 reflections with I > 2σ(I) |
Tmin = 0.89, Tmax = 0.96 | Rint = 0.029 |
8001 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 25 restraints |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.13 e Å−3 |
2241 reflections | Δρmin = −0.18 e Å−3 |
227 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.4237 (3) | 0.0890 (2) | 0.0903 (2) | 0.0313 (6) | 0.7358 (19) |
C2 | 0.5574 (3) | 0.13910 (19) | 0.1462 (2) | 0.0309 (5) | 0.7358 (19) |
C3 | 0.6003 (3) | 0.2294 (3) | 0.0950 (3) | 0.0360 (8) | 0.7358 (19) |
H3 | 0.6925 | 0.2628 | 0.1315 | 0.043* | 0.7358 (19) |
C4 | 0.5096 (3) | 0.2704 (4) | −0.0082 (4) | 0.0407 (9) | 0.7358 (19) |
H4 | 0.5386 | 0.3338 | −0.0431 | 0.049* | 0.7358 (19) |
C5 | 0.3736 (5) | 0.2221 (5) | −0.0656 (5) | 0.0518 (12) | 0.7358 (19) |
H5 | 0.3108 | 0.2541 | −0.1366 | 0.062* | 0.7358 (19) |
C6 | 0.3298 (5) | 0.1249 (4) | −0.0170 (3) | 0.0428 (9) | 0.7358 (19) |
H6 | 0.2416 | 0.0877 | −0.0563 | 0.051* | 0.7358 (19) |
N1 | 0.4129 (3) | 0.0010 (2) | 0.1649 (2) | 0.0320 (6) | 0.7358 (19) |
N2 | 0.6273 (4) | 0.0834 (4) | 0.2537 (3) | 0.0313 (8) | 0.7358 (19) |
C7 | 0.5371 (2) | 0.00446 (18) | 0.2610 (2) | 0.0307 (5) | 0.7358 (19) |
O1 | 0.4764 (3) | −0.1518 (3) | 0.3722 (4) | 0.0472 (7) | 0.7358 (19) |
C8 | 0.5664 (3) | −0.0645 (2) | 0.3674 (2) | 0.0328 (6) | 0.7358 (19) |
C9 | 0.6695 (4) | −0.0567 (3) | 0.4774 (4) | 0.0377 (9) | 0.7358 (19) |
H9 | 0.7458 | −0.0044 | 0.4997 | 0.045* | 0.7358 (19) |
C10 | 0.6407 (5) | −0.1420 (3) | 0.5523 (4) | 0.0402 (9) | 0.7358 (19) |
H10 | 0.6946 | −0.1582 | 0.6338 | 0.048* | 0.7358 (19) |
C11 | 0.5240 (9) | −0.1943 (5) | 0.4860 (7) | 0.0473 (13) | 0.7358 (19) |
H11 | 0.4794 | −0.2541 | 0.5146 | 0.057* | 0.7358 (19) |
C12 | 0.2886 (18) | −0.0743 (12) | 0.1348 (13) | 0.0354 (9) | 0.7358 (19) |
H12A | 0.3242 | −0.146 | 0.1685 | 0.043* | 0.7358 (19) |
H12B | 0.2551 | −0.0816 | 0.0446 | 0.043* | 0.7358 (19) |
C51 | 0.4865 (8) | −0.0782 (6) | 0.3159 (7) | 0.0313 (6) | 0.2642 (19) |
C52 | 0.6127 (7) | −0.0162 (6) | 0.3668 (7) | 0.0309 (5) | 0.2642 (19) |
C53 | 0.7059 (13) | −0.0359 (11) | 0.4784 (12) | 0.0360 (8) | 0.2642 (19) |
H53 | 0.7913 | 0.0069 | 0.5103 | 0.043* | 0.2642 (19) |
C54 | 0.6709 (16) | −0.1194 (11) | 0.5417 (14) | 0.0407 (9) | 0.2642 (19) |
H54 | 0.7316 | −0.1331 | 0.6217 | 0.049* | 0.2642 (19) |
C55 | 0.549 (3) | −0.188 (2) | 0.495 (2) | 0.0518 (12) | 0.2642 (19) |
H55 | 0.5323 | −0.2486 | 0.5408 | 0.062* | 0.2642 (19) |
C56 | 0.4458 (16) | −0.1633 (14) | 0.3744 (17) | 0.0428 (9) | 0.2642 (19) |
H56 | 0.3589 | −0.204 | 0.3409 | 0.051* | 0.2642 (19) |
N51 | 0.4169 (9) | −0.0312 (6) | 0.2055 (8) | 0.0320 (6) | 0.2642 (19) |
N52 | 0.6201 (14) | 0.0689 (13) | 0.2877 (10) | 0.0313 (8) | 0.2642 (19) |
C57 | 0.5035 (7) | 0.0567 (5) | 0.1939 (6) | 0.0307 (5) | 0.2642 (19) |
O51 | 0.3306 (11) | 0.1447 (7) | 0.0109 (8) | 0.0472 (7) | 0.2642 (19) |
C58 | 0.4687 (10) | 0.1333 (6) | 0.0957 (8) | 0.0328 (6) | 0.2642 (19) |
C59 | 0.5548 (11) | 0.2130 (9) | 0.0688 (10) | 0.0377 (9) | 0.2642 (19) |
H59 | 0.6546 | 0.228 | 0.1105 | 0.045* | 0.2642 (19) |
C60 | 0.4665 (14) | 0.2697 (12) | −0.0338 (12) | 0.0402 (9) | 0.2642 (19) |
H60 | 0.4958 | 0.3303 | −0.073 | 0.048* | 0.2642 (19) |
C61 | 0.3392 (18) | 0.2234 (12) | −0.0636 (16) | 0.0473 (13) | 0.2642 (19) |
H61 | 0.2609 | 0.2441 | −0.1317 | 0.057* | 0.2642 (19) |
C62 | 0.282 (5) | −0.074 (3) | 0.124 (4) | 0.0354 (9) | 0.2642 (19) |
H62A | 0.2887 | −0.1534 | 0.1167 | 0.043* | 0.2642 (19) |
H62B | 0.2649 | −0.0419 | 0.0412 | 0.043* | 0.2642 (19) |
O2 | 0.09722 (14) | 0.05435 (11) | 0.14736 (13) | 0.0475 (4) | |
C13 | 0.15930 (19) | −0.04412 (14) | 0.18073 (17) | 0.0363 (4) | |
C14 | 0.0869 (2) | −0.09514 (17) | 0.2515 (2) | 0.0524 (6) | |
H14 | 0.1083 | −0.1648 | 0.2866 | 0.063* | |
C15 | −0.0283 (2) | −0.02500 (18) | 0.2642 (2) | 0.0523 (6) | |
H15 | −0.0984 | −0.0387 | 0.3095 | 0.063* | |
C16 | −0.0184 (2) | 0.06288 (18) | 0.2007 (2) | 0.0518 (6) | |
H16 | −0.0821 | 0.1235 | 0.1929 | 0.062* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0307 (14) | 0.0315 (13) | 0.0322 (13) | 0.0019 (10) | 0.0090 (11) | −0.0040 (11) |
C2 | 0.0256 (12) | 0.0325 (12) | 0.0358 (14) | 0.0017 (10) | 0.0103 (11) | −0.0059 (11) |
C3 | 0.0304 (17) | 0.0412 (17) | 0.0378 (18) | −0.0001 (13) | 0.0116 (12) | −0.0004 (13) |
C4 | 0.036 (2) | 0.0445 (16) | 0.043 (2) | −0.0006 (17) | 0.0141 (15) | 0.0064 (16) |
C5 | 0.044 (3) | 0.076 (2) | 0.0336 (19) | 0.015 (2) | 0.0089 (18) | 0.0186 (17) |
C6 | 0.0360 (15) | 0.053 (2) | 0.039 (2) | −0.0008 (14) | 0.0088 (15) | −0.0106 (14) |
N1 | 0.0262 (9) | 0.0336 (17) | 0.0364 (19) | −0.0030 (11) | 0.0084 (12) | −0.0043 (11) |
N2 | 0.0277 (9) | 0.0330 (16) | 0.034 (2) | −0.0002 (9) | 0.0094 (14) | −0.0006 (16) |
C7 | 0.0290 (12) | 0.0301 (13) | 0.0350 (15) | 0.0041 (10) | 0.0120 (11) | −0.0026 (10) |
O1 | 0.0460 (18) | 0.0394 (13) | 0.0553 (13) | −0.0010 (12) | 0.0117 (14) | 0.0083 (11) |
C8 | 0.0329 (15) | 0.0284 (13) | 0.0400 (15) | 0.0031 (12) | 0.0149 (12) | −0.0008 (12) |
C9 | 0.036 (2) | 0.038 (2) | 0.0403 (16) | 0.0031 (14) | 0.0124 (15) | 0.0018 (16) |
C10 | 0.051 (3) | 0.036 (2) | 0.0351 (17) | 0.0127 (16) | 0.0151 (15) | 0.0097 (14) |
C11 | 0.060 (4) | 0.0326 (18) | 0.054 (3) | 0.0104 (18) | 0.024 (2) | 0.0148 (17) |
C12 | 0.0337 (18) | 0.0358 (10) | 0.038 (3) | −0.0079 (10) | 0.0110 (19) | −0.0081 (14) |
C51 | 0.0307 (14) | 0.0315 (13) | 0.0322 (13) | 0.0019 (10) | 0.0090 (11) | −0.0040 (11) |
C52 | 0.0256 (12) | 0.0325 (12) | 0.0358 (14) | 0.0017 (10) | 0.0103 (11) | −0.0059 (11) |
C53 | 0.0304 (17) | 0.0412 (17) | 0.0378 (18) | −0.0001 (13) | 0.0116 (12) | −0.0004 (13) |
C54 | 0.036 (2) | 0.0445 (16) | 0.043 (2) | −0.0006 (17) | 0.0141 (15) | 0.0064 (16) |
C55 | 0.044 (3) | 0.076 (2) | 0.0336 (19) | 0.015 (2) | 0.0089 (18) | 0.0186 (17) |
C56 | 0.0360 (15) | 0.053 (2) | 0.039 (2) | −0.0008 (14) | 0.0088 (15) | −0.0106 (14) |
N51 | 0.0262 (9) | 0.0336 (17) | 0.0364 (19) | −0.0030 (11) | 0.0084 (12) | −0.0043 (11) |
N52 | 0.0277 (9) | 0.0330 (16) | 0.034 (2) | −0.0002 (9) | 0.0094 (14) | −0.0006 (16) |
C57 | 0.0290 (12) | 0.0301 (13) | 0.0350 (15) | 0.0041 (10) | 0.0120 (11) | −0.0026 (10) |
O51 | 0.0460 (18) | 0.0394 (13) | 0.0553 (13) | −0.0010 (12) | 0.0117 (14) | 0.0083 (11) |
C58 | 0.0329 (15) | 0.0284 (13) | 0.0400 (15) | 0.0031 (12) | 0.0149 (12) | −0.0008 (12) |
C59 | 0.036 (2) | 0.038 (2) | 0.0403 (16) | 0.0031 (14) | 0.0124 (15) | 0.0018 (16) |
C60 | 0.051 (3) | 0.036 (2) | 0.0351 (17) | 0.0127 (16) | 0.0151 (15) | 0.0097 (14) |
C61 | 0.060 (4) | 0.0326 (18) | 0.054 (3) | 0.0104 (18) | 0.024 (2) | 0.0148 (17) |
C62 | 0.0337 (18) | 0.0358 (10) | 0.038 (3) | −0.0079 (10) | 0.0110 (19) | −0.0081 (14) |
O2 | 0.0410 (7) | 0.0499 (8) | 0.0540 (9) | 0.0063 (6) | 0.0166 (6) | 0.0032 (7) |
C13 | 0.0321 (9) | 0.0355 (10) | 0.0415 (11) | −0.0061 (8) | 0.0097 (8) | −0.0100 (8) |
C14 | 0.0510 (12) | 0.0448 (11) | 0.0702 (15) | −0.0059 (10) | 0.0315 (11) | −0.0008 (11) |
C15 | 0.0391 (11) | 0.0655 (14) | 0.0593 (14) | −0.0064 (10) | 0.0254 (10) | −0.0095 (12) |
C16 | 0.0355 (11) | 0.0649 (14) | 0.0571 (14) | 0.0103 (10) | 0.0161 (10) | −0.0053 (12) |
C1—C6 | 1.374 (5) | C52—N52 | 1.397 (15) |
C1—C2 | 1.395 (4) | C53—C54 | 1.348 (13) |
C1—N1 | 1.399 (4) | C53—H53 | 0.95 |
C2—C3 | 1.369 (4) | C54—C55 | 1.412 (19) |
C2—N2 | 1.403 (4) | C54—H54 | 0.95 |
C3—C4 | 1.351 (5) | C55—C56 | 1.482 (18) |
C3—H3 | 0.95 | C55—H55 | 0.95 |
C4—C5 | 1.406 (6) | C56—H56 | 0.95 |
C4—H4 | 0.95 | N51—C57 | 1.387 (9) |
C5—C6 | 1.429 (7) | N51—C62 | 1.46 (4) |
C5—H5 | 0.95 | N52—C57 | 1.318 (12) |
C6—H6 | 0.95 | C57—C58 | 1.433 (11) |
N1—C7 | 1.371 (3) | O51—C61 | 1.306 (14) |
N1—C12 | 1.464 (15) | O51—C58 | 1.404 (12) |
N2—C7 | 1.311 (4) | C58—C59 | 1.361 (12) |
C7—C8 | 1.443 (4) | C59—C60 | 1.422 (13) |
O1—C11 | 1.354 (6) | C59—H59 | 0.95 |
O1—C8 | 1.383 (4) | C60—C61 | 1.289 (18) |
C8—C9 | 1.365 (5) | C60—H60 | 0.95 |
C9—C10 | 1.425 (4) | C61—H61 | 0.95 |
C9—H9 | 0.95 | C62—C13 | 1.51 (5) |
C10—C11 | 1.324 (7) | C62—H62A | 0.99 |
C10—H10 | 0.95 | C62—H62B | 0.99 |
C11—H11 | 0.95 | O2—C13 | 1.363 (2) |
C12—C13 | 1.489 (19) | O2—C16 | 1.378 (2) |
C12—H12A | 0.99 | C13—C14 | 1.337 (3) |
C12—H12B | 0.99 | C14—C15 | 1.424 (3) |
C51—C56 | 1.352 (14) | C14—H14 | 0.95 |
C51—N51 | 1.378 (11) | C15—C16 | 1.322 (3) |
C51—C52 | 1.403 (9) | C15—H15 | 0.95 |
C52—C53 | 1.357 (13) | C16—H16 | 0.95 |
C6—C1—C2 | 123.3 (3) | C52—C53—H53 | 121.8 |
C6—C1—N1 | 130.9 (3) | C53—C54—C55 | 123.4 (14) |
C2—C1—N1 | 105.8 (2) | C53—C54—H54 | 118.3 |
C3—C2—C1 | 120.2 (3) | C55—C54—H54 | 118.3 |
C3—C2—N2 | 130.3 (3) | C54—C55—C56 | 119.4 (15) |
C1—C2—N2 | 109.6 (2) | C54—C55—H55 | 120.3 |
C4—C3—C2 | 119.0 (3) | C56—C55—H55 | 120.3 |
C4—C3—H3 | 120.5 | C51—C56—C55 | 114.2 (13) |
C2—C3—H3 | 120.5 | C51—C56—H56 | 122.9 |
C3—C4—C5 | 121.9 (4) | C55—C56—H56 | 122.9 |
C3—C4—H4 | 119.0 | C51—N51—C57 | 105.5 (7) |
C5—C4—H4 | 119.0 | C51—N51—C62 | 123.2 (18) |
C4—C5—C6 | 120.0 (4) | C57—N51—C62 | 131.3 (19) |
C4—C5—H5 | 120.0 | C57—N52—C52 | 105.0 (9) |
C6—C5—H5 | 120.0 | N52—C57—N51 | 113.5 (9) |
C1—C6—C5 | 115.5 (4) | N52—C57—C58 | 121.4 (8) |
C1—C6—H6 | 122.3 | N51—C57—C58 | 125.1 (7) |
C5—C6—H6 | 122.3 | C61—O51—C58 | 108.2 (10) |
C7—N1—C1 | 105.8 (2) | C59—C58—O51 | 105.7 (8) |
C7—N1—C12 | 131.7 (6) | C59—C58—C57 | 128.8 (9) |
C1—N1—C12 | 122.5 (6) | O51—C58—C57 | 125.3 (8) |
C7—N2—C2 | 105.0 (3) | C58—C59—C60 | 106.7 (9) |
N2—C7—N1 | 113.7 (3) | C58—C59—H59 | 126.7 |
N2—C7—C8 | 120.7 (3) | C60—C59—H59 | 126.7 |
N1—C7—C8 | 125.4 (2) | C61—C60—C59 | 107.2 (12) |
C11—O1—C8 | 106.8 (3) | C61—C60—H60 | 126.4 |
C9—C8—O1 | 108.4 (3) | C59—C60—H60 | 126.4 |
C9—C8—C7 | 130.7 (3) | C60—C61—O51 | 112.0 (14) |
O1—C8—C7 | 120.8 (3) | C60—C61—H61 | 124.0 |
C8—C9—C10 | 106.8 (3) | O51—C61—H61 | 124.0 |
C8—C9—H9 | 126.6 | N51—C62—C13 | 106 (3) |
C10—C9—H9 | 126.6 | N51—C62—H62A | 110.6 |
C11—C10—C9 | 106.6 (4) | C13—C62—H62A | 110.6 |
C11—C10—H10 | 126.7 | N51—C62—H62B | 110.6 |
C9—C10—H10 | 126.7 | C13—C62—H62B | 110.6 |
C10—C11—O1 | 111.5 (4) | H62A—C62—H62B | 108.7 |
C10—C11—H11 | 124.3 | C13—O2—C16 | 106.05 (15) |
O1—C11—H11 | 124.3 | C14—C13—O2 | 110.00 (16) |
N1—C12—C13 | 115.6 (10) | C14—C13—C12 | 132.8 (6) |
N1—C12—H12A | 108.4 | O2—C13—C12 | 117.2 (6) |
C13—C12—H12A | 108.4 | C14—C13—C62 | 134.8 (17) |
N1—C12—H12B | 108.4 | O2—C13—C62 | 115.0 (16) |
C13—C12—H12B | 108.4 | C13—C14—C15 | 106.88 (19) |
H12A—C12—H12B | 107.4 | C13—C14—H14 | 126.6 |
C56—C51—N51 | 130.2 (10) | C15—C14—H14 | 126.6 |
C56—C51—C52 | 122.9 (9) | C16—C15—C14 | 106.55 (18) |
N51—C51—C52 | 106.8 (6) | C16—C15—H15 | 126.7 |
C53—C52—N52 | 127.2 (9) | C14—C15—H15 | 126.7 |
C53—C52—C51 | 123.5 (8) | C15—C16—O2 | 110.52 (18) |
N52—C52—C51 | 109.3 (7) | C15—C16—H16 | 124.7 |
C54—C53—C52 | 116.4 (11) | O2—C16—H16 | 124.7 |
C54—C53—H53 | 121.8 | ||
C6—C1—C2—C3 | 0.6 (4) | N51—C51—C56—C55 | −177.9 (17) |
N1—C1—C2—C3 | −179.7 (3) | C52—C51—C56—C55 | −2 (2) |
C6—C1—C2—N2 | −180.0 (3) | C54—C55—C56—C51 | 4 (3) |
N1—C1—C2—N2 | −0.3 (3) | C56—C51—N51—C57 | 176.7 (12) |
C1—C2—C3—C4 | 1.7 (5) | C52—C51—N51—C57 | 0.1 (9) |
N2—C2—C3—C4 | −177.5 (4) | C56—C51—N51—C62 | −5 (3) |
C2—C3—C4—C5 | −1.0 (6) | C52—C51—N51—C62 | 179 (2) |
C3—C4—C5—C6 | −2.0 (7) | C53—C52—N52—C57 | −177.4 (10) |
C2—C1—C6—C5 | −3.4 (4) | C51—C52—N52—C57 | −0.4 (12) |
N1—C1—C6—C5 | 177.0 (3) | C52—N52—C57—N51 | 0.5 (13) |
C4—C5—C6—C1 | 4.0 (6) | C52—N52—C57—C58 | 176.5 (7) |
C6—C1—N1—C7 | −179.2 (3) | C51—N51—C57—N52 | −0.4 (12) |
C2—C1—N1—C7 | 1.2 (3) | C62—N51—C57—N52 | −179 (3) |
C6—C1—N1—C12 | 1.4 (9) | C51—N51—C57—C58 | −176.3 (6) |
C2—C1—N1—C12 | −178.2 (8) | C62—N51—C57—C58 | 5 (3) |
C3—C2—N2—C7 | 178.6 (3) | C61—O51—C58—C59 | 2.7 (13) |
C1—C2—N2—C7 | −0.7 (4) | C61—O51—C58—C57 | 178.8 (10) |
C2—N2—C7—N1 | 1.5 (4) | N52—C57—C58—C59 | 13.6 (15) |
C2—N2—C7—C8 | −174.0 (2) | N51—C57—C58—C59 | −170.8 (10) |
C1—N1—C7—N2 | −1.7 (4) | N52—C57—C58—O51 | −161.6 (10) |
C12—N1—C7—N2 | 177.5 (10) | N51—C57—C58—O51 | 13.9 (12) |
C1—N1—C7—C8 | 173.5 (2) | O51—C58—C59—C60 | −1.1 (12) |
C12—N1—C7—C8 | −7.2 (10) | C57—C58—C59—C60 | −177.1 (9) |
C11—O1—C8—C9 | 1.3 (6) | C58—C59—C60—C61 | −0.8 (16) |
C11—O1—C8—C7 | −174.8 (5) | C59—C60—C61—O51 | 2.6 (19) |
N2—C7—C8—C9 | 8.8 (5) | C58—O51—C61—C60 | −3.4 (17) |
N1—C7—C8—C9 | −166.2 (3) | C51—N51—C62—C13 | 76 (3) |
N2—C7—C8—O1 | −176.0 (3) | C57—N51—C62—C13 | −106 (3) |
N1—C7—C8—O1 | 9.0 (4) | C16—O2—C13—C14 | −0.1 (2) |
O1—C8—C9—C10 | −0.3 (4) | C16—O2—C13—C12 | −180.0 (6) |
C7—C8—C9—C10 | 175.3 (3) | C16—O2—C13—C62 | 175.5 (16) |
C8—C9—C10—C11 | −0.8 (6) | N1—C12—C13—C14 | −123.9 (8) |
C9—C10—C11—O1 | 1.7 (8) | N1—C12—C13—O2 | 56.0 (11) |
C8—O1—C11—C10 | −1.9 (8) | N1—C12—C13—C62 | 120.30 |
C7—N1—C12—C13 | 92.5 (11) | N51—C62—C13—C14 | −98 (3) |
C1—N1—C12—C13 | −88.3 (10) | N51—C62—C13—O2 | 88 (2) |
C56—C51—C52—C53 | 0.4 (16) | N51—C62—C13—C12 | −30.30 |
N51—C51—C52—C53 | 177.3 (10) | O2—C13—C14—C15 | 0.0 (2) |
C56—C51—C52—N52 | −176.7 (12) | C12—C13—C14—C15 | 179.9 (7) |
N51—C51—C52—N52 | 0.2 (10) | C62—C13—C14—C15 | −174 (2) |
N52—C52—C53—C54 | 175.8 (13) | C13—C14—C15—C16 | 0.1 (2) |
C51—C52—C53—C54 | −0.8 (18) | C14—C15—C16—O2 | −0.2 (2) |
C52—C53—C54—C55 | 3 (3) | C13—O2—C16—C15 | 0.2 (2) |
C53—C54—C55—C56 | −4 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12A···O1 | 0.99 | 2.37 | 2.959 (15) | 117 |
C62—H62B···O51 | 0.99 | 2.44 | 3.08 (5) | 122 |
C6—H6···C15i | 0.95 | 2.77 | 3.635 (5) | 152 |
C5—H5···N2ii | 0.95 | 2.73 | 3.587 (6) | 151 |
Symmetry codes: (i) −x, −y, −z; (ii) x−1/2, −y+1/2, z−1/2. |
C16H13N2O2+·Cl−·H2O | F(000) = 664 |
Mr = 318.75 | Dx = 1.366 Mg m−3 |
Monoclinic, Cc | Mo Kα radiation, λ = 0.71073 Å |
a = 4.8700 (7) Å | Cell parameters from 50 reflections |
b = 18.694 (3) Å | θ = 5.4–19.0° |
c = 17.196 (3) Å | µ = 0.26 mm−1 |
β = 98.050 (5)° | T = 200 K |
V = 1550.1 (4) Å3 | Plate, colorless |
Z = 4 | 0.60 × 0.50 × 0.20 mm |
Bruker SMART X2S benchtop diffractometer | 2685 independent reflections |
Radiation source: sealed microfocus tube | 2420 reflections with I > 2σ(I) |
Doubly curved silicon crystal monochromator | Rint = 0.067 |
Detector resolution: 8.3330 pixels mm-1 | θmax = 25.0°, θmin = 2.5° |
ω scans | h = −5→5 |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −22→22 |
Tmin = 0.86, Tmax = 0.95 | l = −20→20 |
7314 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.037 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.094 | w = 1/[σ2(Fo2) + (0.0276P)2 + 0.1149P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
2685 reflections | Δρmax = 0.15 e Å−3 |
257 parameters | Δρmin = −0.21 e Å−3 |
92 restraints | Absolute structure: Flack x determined using 1034 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.10 (5) |
C16H13N2O2+·Cl−·H2O | V = 1550.1 (4) Å3 |
Mr = 318.75 | Z = 4 |
Monoclinic, Cc | Mo Kα radiation |
a = 4.8700 (7) Å | µ = 0.26 mm−1 |
b = 18.694 (3) Å | T = 200 K |
c = 17.196 (3) Å | 0.60 × 0.50 × 0.20 mm |
β = 98.050 (5)° |
Bruker SMART X2S benchtop diffractometer | 2685 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | 2420 reflections with I > 2σ(I) |
Tmin = 0.86, Tmax = 0.95 | Rint = 0.067 |
7314 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.094 | Δρmax = 0.15 e Å−3 |
S = 1.07 | Δρmin = −0.21 e Å−3 |
2685 reflections | Absolute structure: Flack x determined using 1034 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
257 parameters | Absolute structure parameter: 0.10 (5) |
92 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cl1 | 0.74733 (17) | 0.86438 (5) | 0.26747 (6) | 0.0453 (3) | |
OW | 0.2918 (8) | 0.92226 (19) | 0.35666 (17) | 0.0482 (8) | |
HWA | 0.414 (10) | 0.908 (2) | 0.332 (3) | 0.045 (13)* | |
HWB | 0.124 (14) | 0.912 (3) | 0.329 (4) | 0.08 (2)* | |
C1 | 0.5263 (7) | 0.77492 (18) | 0.5832 (2) | 0.0304 (8) | |
C2 | 0.5470 (7) | 0.79754 (19) | 0.5078 (2) | 0.0303 (8) | |
C3 | 0.7223 (8) | 0.7640 (2) | 0.4619 (2) | 0.0360 (9) | |
H3 | 0.7367 | 0.7796 | 0.4101 | 0.043* | |
C4 | 0.8741 (8) | 0.7070 (2) | 0.4956 (2) | 0.0408 (9) | |
H4 | 0.998 | 0.6829 | 0.4665 | 0.049* | |
C5 | 0.8500 (9) | 0.6837 (2) | 0.5719 (2) | 0.0441 (10) | |
H5 | 0.9571 | 0.6439 | 0.5929 | 0.053* | |
C6 | 0.6752 (8) | 0.7169 (2) | 0.6172 (2) | 0.0366 (9) | |
H6 | 0.6578 | 0.7009 | 0.6687 | 0.044* | |
N1 | 0.3381 (6) | 0.82077 (16) | 0.61275 (16) | 0.0316 (7) | |
N2 | 0.3724 (7) | 0.85629 (16) | 0.49294 (18) | 0.0324 (7) | |
H2 | 0.326 (12) | 0.882 (3) | 0.447 (3) | 0.072 (16)* | |
C7 | 0.2529 (8) | 0.86929 (19) | 0.5563 (2) | 0.0315 (8) | |
C8 | 0.065 (5) | 0.9291 (11) | 0.5572 (11) | 0.033 (6) | 0.59 (2) |
C9 | −0.013 (3) | 0.9784 (8) | 0.5015 (7) | 0.057 (3) | 0.59 (2) |
H9 | 0.0401 | 0.9806 | 0.4505 | 0.068* | 0.59 (2) |
C10 | −0.187 (3) | 1.0257 (7) | 0.5339 (7) | 0.051 (3) | 0.59 (2) |
H10 | −0.2682 | 1.0675 | 0.509 | 0.061* | 0.59 (2) |
C11 | −0.222 (3) | 1.0030 (7) | 0.6054 (8) | 0.043 (3) | 0.59 (2) |
H11 | −0.3422 | 1.0236 | 0.6383 | 0.052* | 0.59 (2) |
O1 | −0.053 (2) | 0.9442 (5) | 0.6227 (5) | 0.046 (3) | 0.59 (2) |
C58 | 0.064 (9) | 0.925 (2) | 0.5647 (16) | 0.047 (11) | 0.41 (2) |
C59 | 0.025 (4) | 0.9630 (9) | 0.6278 (10) | 0.037 (4) | 0.41 (2) |
H59 | 0.1087 | 0.9551 | 0.6804 | 0.044* | 0.41 (2) |
C60 | −0.164 (4) | 1.0167 (11) | 0.6013 (11) | 0.048 (6) | 0.41 (2) |
H60 | −0.2185 | 1.0549 | 0.6323 | 0.058* | 0.41 (2) |
C61 | −0.260 (4) | 1.0054 (9) | 0.5230 (10) | 0.045 (4) | 0.41 (2) |
H61 | −0.4105 | 1.0289 | 0.4922 | 0.053* | 0.41 (2) |
O51 | −0.090 (2) | 0.9530 (6) | 0.4981 (6) | 0.042 (3) | 0.41 (2) |
C12 | 0.2683 (8) | 0.8158 (2) | 0.6934 (2) | 0.0341 (8) | |
H12A | 0.2391 | 0.765 | 0.7063 | 0.041* | |
H12B | 0.0932 | 0.8418 | 0.6964 | 0.041* | |
C13 | 0.4924 (8) | 0.8463 (2) | 0.7516 (2) | 0.0343 (8) | |
C14 | 0.6815 (9) | 0.8176 (2) | 0.8064 (2) | 0.0416 (10) | |
H14 | 0.7041 | 0.7683 | 0.8191 | 0.05* | |
C15 | 0.8431 (10) | 0.8756 (2) | 0.8422 (2) | 0.0478 (11) | |
H15 | 0.9926 | 0.8724 | 0.8839 | 0.057* | |
C16 | 0.7443 (10) | 0.9350 (2) | 0.8059 (3) | 0.0552 (12) | |
H16 | 0.8157 | 0.9817 | 0.8172 | 0.066* | |
O2 | 0.5235 (6) | 0.91873 (15) | 0.74977 (17) | 0.0494 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0534 (6) | 0.0446 (5) | 0.0392 (5) | −0.0003 (5) | 0.0113 (4) | −0.0066 (4) |
OW | 0.050 (2) | 0.062 (2) | 0.0336 (15) | 0.0073 (16) | 0.0077 (15) | 0.0064 (13) |
C1 | 0.0337 (19) | 0.0279 (17) | 0.0297 (18) | −0.0005 (15) | 0.0051 (15) | −0.0040 (14) |
C2 | 0.031 (2) | 0.0292 (18) | 0.0296 (17) | −0.0018 (15) | 0.0020 (15) | −0.0040 (14) |
C3 | 0.042 (2) | 0.038 (2) | 0.0282 (19) | −0.0018 (17) | 0.0074 (16) | −0.0055 (16) |
C4 | 0.043 (2) | 0.039 (2) | 0.041 (2) | 0.0114 (18) | 0.0098 (18) | −0.0109 (17) |
C5 | 0.050 (2) | 0.036 (2) | 0.044 (2) | 0.0141 (18) | −0.0003 (18) | 0.0002 (17) |
C6 | 0.048 (2) | 0.033 (2) | 0.0276 (19) | 0.0055 (17) | 0.0021 (16) | 0.0000 (14) |
N1 | 0.0362 (17) | 0.0330 (18) | 0.0265 (14) | 0.0011 (14) | 0.0076 (13) | −0.0017 (12) |
N2 | 0.0361 (17) | 0.0340 (17) | 0.0266 (16) | 0.0038 (13) | 0.0028 (14) | 0.0023 (13) |
C7 | 0.032 (2) | 0.0320 (19) | 0.0296 (18) | −0.0012 (15) | 0.0029 (16) | −0.0029 (15) |
C8 | 0.035 (8) | 0.028 (7) | 0.036 (6) | 0.003 (4) | 0.006 (4) | −0.003 (4) |
C9 | 0.066 (6) | 0.063 (6) | 0.045 (4) | 0.018 (5) | 0.023 (4) | 0.009 (4) |
C10 | 0.059 (6) | 0.043 (5) | 0.053 (5) | 0.021 (5) | 0.018 (4) | 0.011 (4) |
C11 | 0.044 (5) | 0.037 (5) | 0.054 (5) | 0.013 (4) | 0.021 (4) | 0.002 (4) |
O1 | 0.052 (5) | 0.047 (4) | 0.040 (3) | 0.010 (3) | 0.015 (3) | 0.006 (3) |
C58 | 0.045 (12) | 0.043 (12) | 0.052 (13) | 0.003 (6) | 0.007 (7) | −0.002 (6) |
C59 | 0.037 (6) | 0.037 (6) | 0.034 (5) | 0.003 (5) | −0.002 (4) | 0.000 (5) |
C60 | 0.051 (8) | 0.044 (8) | 0.054 (7) | 0.009 (6) | 0.020 (5) | −0.002 (5) |
C61 | 0.041 (6) | 0.039 (6) | 0.052 (6) | 0.001 (5) | −0.001 (4) | 0.005 (5) |
O51 | 0.043 (5) | 0.043 (5) | 0.040 (4) | −0.001 (4) | 0.008 (3) | −0.004 (4) |
C12 | 0.038 (2) | 0.038 (2) | 0.0291 (17) | −0.0003 (16) | 0.0128 (16) | 0.0011 (15) |
C13 | 0.045 (2) | 0.0337 (19) | 0.0262 (17) | −0.0008 (17) | 0.0119 (17) | −0.0013 (16) |
C14 | 0.054 (2) | 0.040 (2) | 0.0299 (19) | 0.0019 (19) | 0.0041 (18) | 0.0034 (17) |
C15 | 0.053 (3) | 0.055 (3) | 0.033 (2) | −0.001 (2) | −0.0035 (19) | −0.0038 (19) |
C16 | 0.074 (3) | 0.045 (3) | 0.044 (2) | −0.015 (2) | −0.003 (2) | −0.008 (2) |
O2 | 0.068 (2) | 0.0327 (15) | 0.0434 (15) | −0.0012 (14) | −0.0047 (15) | −0.0011 (12) |
OW—HWA | 0.82 (5) | C10—C11 | 1.333 (13) |
OW—HWB | 0.90 (7) | C10—H10 | 0.95 |
C1—C2 | 1.380 (5) | C11—O1 | 1.383 (12) |
C1—C6 | 1.389 (5) | C11—H11 | 0.95 |
C1—N1 | 1.401 (4) | C58—C59 | 1.34 (2) |
C2—C3 | 1.391 (5) | C58—O51 | 1.38 (2) |
C2—N2 | 1.391 (5) | C59—C60 | 1.395 (19) |
C3—C4 | 1.378 (6) | C59—H59 | 0.95 |
C3—H3 | 0.95 | C60—C61 | 1.379 (18) |
C4—C5 | 1.403 (6) | C60—H60 | 0.95 |
C4—H4 | 0.95 | C61—O51 | 1.386 (16) |
C5—C6 | 1.379 (6) | C61—H61 | 0.95 |
C5—H5 | 0.95 | C12—C13 | 1.489 (5) |
C6—H6 | 0.95 | C12—H12A | 0.99 |
N1—C7 | 1.350 (5) | C12—H12B | 0.99 |
N1—C12 | 1.476 (4) | C13—C14 | 1.335 (5) |
N2—C7 | 1.328 (5) | C13—O2 | 1.363 (4) |
N2—H2 | 0.92 (6) | C14—C15 | 1.428 (6) |
C7—C58 | 1.41 (2) | C14—H14 | 0.95 |
C7—C8 | 1.447 (13) | C15—C16 | 1.330 (6) |
C8—C9 | 1.34 (2) | C15—H15 | 0.95 |
C8—O1 | 1.363 (19) | C16—O2 | 1.375 (5) |
C9—C10 | 1.395 (13) | C16—H16 | 0.95 |
C9—H9 | 0.95 | ||
HWA—OW—HWB | 109 (5) | C9—C10—H10 | 125.4 |
C2—C1—C6 | 122.2 (3) | C10—C11—O1 | 107.6 (10) |
C2—C1—N1 | 106.9 (3) | C10—C11—H11 | 126.2 |
C6—C1—N1 | 130.9 (3) | O1—C11—H11 | 126.2 |
C1—C2—C3 | 121.8 (3) | C8—O1—C11 | 107.0 (10) |
C1—C2—N2 | 107.0 (3) | C59—C58—O51 | 110.2 (16) |
C3—C2—N2 | 131.3 (3) | C59—C58—C7 | 130 (2) |
C4—C3—C2 | 116.5 (4) | O51—C58—C7 | 118.9 (19) |
C4—C3—H3 | 121.7 | C58—C59—C60 | 106.4 (16) |
C2—C3—H3 | 121.7 | C58—C59—H59 | 126.8 |
C3—C4—C5 | 121.5 (3) | C60—C59—H59 | 126.8 |
C3—C4—H4 | 119.2 | C61—C60—C59 | 109.0 (16) |
C5—C4—H4 | 119.2 | C61—C60—H60 | 125.5 |
C6—C5—C4 | 121.9 (4) | C59—C60—H60 | 125.5 |
C6—C5—H5 | 119.1 | C60—C61—O51 | 106.0 (14) |
C4—C5—H5 | 119.1 | C60—C61—H61 | 127.0 |
C5—C6—C1 | 116.1 (4) | O51—C61—H61 | 127.0 |
C5—C6—H6 | 121.9 | C58—O51—C61 | 107.0 (13) |
C1—C6—H6 | 121.9 | N1—C12—C13 | 111.4 (3) |
C7—N1—C1 | 107.5 (3) | N1—C12—H12A | 109.4 |
C7—N1—C12 | 129.0 (3) | C13—C12—H12A | 109.4 |
C1—N1—C12 | 123.4 (3) | N1—C12—H12B | 109.4 |
C7—N2—C2 | 108.7 (3) | C13—C12—H12B | 109.4 |
C7—N2—H2 | 122 (4) | H12A—C12—H12B | 108.0 |
C2—N2—H2 | 129 (4) | C14—C13—O2 | 110.4 (3) |
N2—C7—N1 | 109.9 (3) | C14—C13—C12 | 133.6 (4) |
N2—C7—C58 | 125.9 (14) | O2—C13—C12 | 116.0 (3) |
N1—C7—C58 | 124.1 (15) | C13—C14—C15 | 106.4 (4) |
N2—C7—C8 | 120.0 (9) | C13—C14—H14 | 126.8 |
N1—C7—C8 | 130.1 (9) | C15—C14—H14 | 126.8 |
C9—C8—O1 | 109.8 (10) | C16—C15—C14 | 106.9 (4) |
C9—C8—C7 | 129.7 (16) | C16—C15—H15 | 126.6 |
O1—C8—C7 | 120.5 (15) | C14—C15—H15 | 126.6 |
C8—C9—C10 | 106.0 (11) | C15—C16—O2 | 110.0 (4) |
C8—C9—H9 | 127.0 | C15—C16—H16 | 125.0 |
C10—C9—H9 | 127.0 | O2—C16—H16 | 125.0 |
C11—C10—C9 | 109.3 (10) | C13—O2—C16 | 106.3 (3) |
C11—C10—H10 | 125.4 | ||
C6—C1—C2—C3 | −1.0 (5) | O1—C8—C9—C10 | 0 (2) |
N1—C1—C2—C3 | 178.8 (3) | C7—C8—C9—C10 | −177 (2) |
C6—C1—C2—N2 | −179.9 (3) | C8—C9—C10—C11 | −2.9 (19) |
N1—C1—C2—N2 | 0.0 (4) | C9—C10—C11—O1 | 5.0 (16) |
C1—C2—C3—C4 | 0.1 (5) | C9—C8—O1—C11 | 3 (2) |
N2—C2—C3—C4 | 178.6 (4) | C7—C8—O1—C11 | −179.4 (18) |
C2—C3—C4—C5 | 0.7 (6) | C10—C11—O1—C8 | −5.2 (19) |
C3—C4—C5—C6 | −0.5 (7) | N2—C7—C58—C59 | −146 (4) |
C4—C5—C6—C1 | −0.5 (6) | N1—C7—C58—C59 | 34 (6) |
C2—C1—C6—C5 | 1.2 (6) | C8—C7—C58—C59 | −140.30 |
N1—C1—C6—C5 | −178.6 (4) | N2—C7—C58—O51 | 25 (5) |
C2—C1—N1—C7 | −0.5 (4) | N1—C7—C58—O51 | −155 (3) |
C6—C1—N1—C7 | 179.3 (4) | C8—C7—C58—O51 | 30.30 |
C2—C1—N1—C12 | −177.5 (3) | O51—C58—C59—C60 | 1 (4) |
C6—C1—N1—C12 | 2.3 (6) | C7—C58—C59—C60 | 173 (4) |
C1—C2—N2—C7 | 0.5 (4) | C58—C59—C60—C61 | 6 (3) |
C3—C2—N2—C7 | −178.2 (4) | C59—C60—C61—O51 | −11 (2) |
C2—N2—C7—N1 | −0.9 (4) | C59—C58—O51—C61 | −8 (4) |
C2—N2—C7—C58 | 179 (3) | C7—C58—O51—C61 | 179 (3) |
C2—N2—C7—C8 | 178.6 (13) | C60—C61—O51—C58 | 11 (3) |
C1—N1—C7—N2 | 0.8 (4) | C7—N1—C12—C13 | −99.5 (4) |
C12—N1—C7—N2 | 177.6 (3) | C1—N1—C12—C13 | 76.9 (4) |
C1—N1—C7—C58 | −179 (2) | N1—C12—C13—C14 | −108.2 (5) |
C12—N1—C7—C58 | −3 (3) | N1—C12—C13—O2 | 70.0 (4) |
C1—N1—C7—C8 | −178.5 (15) | O2—C13—C14—C15 | 0.3 (4) |
C12—N1—C7—C8 | −1.7 (16) | C12—C13—C14—C15 | 178.6 (4) |
N2—C7—C8—C9 | −1 (3) | C13—C14—C15—C16 | −1.0 (5) |
N1—C7—C8—C9 | 177.9 (19) | C14—C15—C16—O2 | 1.3 (6) |
C58—C7—C8—C9 | −180.30 | C14—C13—O2—C16 | 0.5 (4) |
N2—C7—C8—O1 | −178.0 (15) | C12—C13—O2—C16 | −178.2 (3) |
N1—C7—C8—O1 | 1 (3) | C15—C16—O2—C13 | −1.1 (5) |
C58—C7—C8—O1 | 10.30 |
D—H···A | D—H | H···A | D···A | D—H···A |
OW—HWA···Cl1 | 0.82 (5) | 2.24 (5) | 3.066 (4) | 178 (5) |
OW—HWB···Cl1i | 0.90 (7) | 2.18 (7) | 3.068 (4) | 169 (5) |
N2—H2···OW | 0.92 (6) | 1.72 (6) | 2.628 (4) | 170 (6) |
Symmetry code: (i) x−1, y, z. |
C18H17N2O2+·Br− | Z = 2 |
Mr = 373.24 | F(000) = 380 |
Triclinic, P1 | Dx = 1.509 Mg m−3 |
a = 9.1903 (10) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.619 (1) Å | Cell parameters from 5609 reflections |
c = 9.7443 (11) Å | θ = 2.3–25.1° |
α = 93.132 (3)° | µ = 2.51 mm−1 |
β = 101.859 (3)° | T = 200 K |
γ = 101.684 (3)° | Block, clear colourless |
V = 821.38 (16) Å3 | 0.50 × 0.40 × 0.30 mm |
Bruker SMART X2S benchtop diffractometer | 2915 independent reflections |
Radiation source: sealed microfocus tube | 2374 reflections with I > 2σ(I) |
Doubly curved silicon crystal monochromator | Rint = 0.043 |
Detector resolution: 8.3330 pixels mm-1 | θmax = 25.3°, θmin = 2.8° |
ω scans | h = −11→10 |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −11→11 |
Tmin = 0.35, Tmax = 0.52 | l = −11→11 |
9745 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.028 | Hydrogen site location: mixed |
wR(F2) = 0.063 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.96 | w = 1/[σ2(Fo2) + (0.031P)2] where P = (Fo2 + 2Fc2)/3 |
2915 reflections | (Δ/σ)max < 0.001 |
230 parameters | Δρmax = 0.42 e Å−3 |
60 restraints | Δρmin = −0.36 e Å−3 |
C18H17N2O2+·Br− | γ = 101.684 (3)° |
Mr = 373.24 | V = 821.38 (16) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.1903 (10) Å | Mo Kα radiation |
b = 9.619 (1) Å | µ = 2.51 mm−1 |
c = 9.7443 (11) Å | T = 200 K |
α = 93.132 (3)° | 0.50 × 0.40 × 0.30 mm |
β = 101.859 (3)° |
Bruker SMART X2S benchtop diffractometer | 2915 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | 2374 reflections with I > 2σ(I) |
Tmin = 0.35, Tmax = 0.52 | Rint = 0.043 |
9745 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | 60 restraints |
wR(F2) = 0.063 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.96 | Δρmax = 0.42 e Å−3 |
2915 reflections | Δρmin = −0.36 e Å−3 |
230 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Br1 | −0.45113 (3) | 0.72114 (3) | −0.16112 (3) | 0.03975 (11) | |
C1 | 0.0686 (3) | 0.9254 (3) | 0.1692 (2) | 0.0323 (6) | |
C2 | −0.0871 (3) | 0.8790 (3) | 0.1222 (2) | 0.0343 (6) | |
C3 | −0.1870 (3) | 0.9395 (3) | 0.1830 (3) | 0.0381 (6) | |
H3 | −0.294 | 0.9076 | 0.1499 | 0.046* | |
C4 | −0.1283 (3) | 1.0461 (3) | 0.2918 (3) | 0.0395 (6) | |
C5 | 0.0321 (3) | 1.0948 (3) | 0.3390 (2) | 0.0375 (6) | |
C6 | 0.1314 (3) | 1.0349 (2) | 0.2784 (2) | 0.0334 (6) | |
H6 | 0.2386 | 1.067 | 0.3099 | 0.04* | |
C41 | −0.2351 (3) | 1.1085 (3) | 0.3622 (3) | 0.0561 (8) | |
H41A | −0.3404 | 1.059 | 0.3201 | 0.084* | |
H41B | −0.2224 | 1.2102 | 0.3492 | 0.084* | |
H41C | −0.212 | 1.0968 | 0.4631 | 0.084* | |
C51 | 0.0955 (3) | 1.2117 (3) | 0.4575 (3) | 0.0525 (7) | |
H51A | 0.2066 | 1.2385 | 0.4709 | 0.079* | |
H51B | 0.0693 | 1.1781 | 0.5443 | 0.079* | |
H51C | 0.0521 | 1.2948 | 0.4346 | 0.079* | |
N1 | 0.1365 (2) | 0.8433 (2) | 0.08661 (19) | 0.0291 (4) | |
N2 | −0.1107 (2) | 0.7715 (2) | 0.0146 (2) | 0.0325 (5) | |
H2 | −0.196 (3) | 0.732 (3) | −0.038 (3) | 0.053 (9)* | |
C7 | 0.0234 (3) | 0.7504 (3) | −0.0045 (2) | 0.0327 (6) | |
C8 | 0.0324 (18) | 0.646 (5) | −0.104 (6) | 0.0340 (12) | 0.608 (9) |
C9 | −0.0760 (10) | 0.5518 (13) | −0.1971 (13) | 0.0369 (17) | 0.608 (9) |
H9 | −0.1826 | 0.5457 | −0.2113 | 0.044* | 0.608 (9) |
C10 | −0.0061 (9) | 0.4639 (7) | −0.2696 (7) | 0.0423 (18) | 0.608 (9) |
H10 | −0.0536 | 0.3887 | −0.3421 | 0.051* | 0.608 (9) |
C11 | 0.1434 (9) | 0.5106 (7) | −0.2131 (8) | 0.0432 (14) | 0.608 (9) |
H11 | 0.2206 | 0.471 | −0.2414 | 0.052* | 0.608 (9) |
O1 | 0.1724 (6) | 0.6211 (5) | −0.1104 (5) | 0.0436 (12) | 0.608 (9) |
C80 | 0.038 (3) | 0.637 (8) | −0.108 (9) | 0.0340 (12) | 0.392 (9) |
C90 | 0.1551 (15) | 0.5888 (16) | −0.1413 (14) | 0.0369 (17) | 0.392 (9) |
H90 | 0.2603 | 0.6237 | −0.1003 | 0.044* | 0.392 (9) |
C100 | 0.0914 (14) | 0.4766 (11) | −0.2488 (11) | 0.0423 (18) | 0.392 (9) |
H100 | 0.1449 | 0.4201 | −0.2941 | 0.051* | 0.392 (9) |
C110 | −0.0588 (14) | 0.4651 (14) | −0.2748 (15) | 0.0432 (14) | 0.392 (9) |
H110 | −0.1295 | 0.3972 | −0.3438 | 0.052* | 0.392 (9) |
O100 | −0.0994 (10) | 0.5620 (15) | −0.1910 (15) | 0.0436 (12) | 0.392 (9) |
C12 | 0.3037 (2) | 0.8655 (3) | 0.1013 (2) | 0.0328 (6) | |
H12A | 0.3504 | 0.9683 | 0.1259 | 0.039* | |
H12B | 0.3249 | 0.8365 | 0.0097 | 0.039* | |
C13 | 0.3753 (2) | 0.7831 (3) | 0.2112 (2) | 0.0322 (6) | |
C14 | 0.4401 (3) | 0.6718 (3) | 0.2068 (3) | 0.0401 (6) | |
H14 | 0.4527 | 0.6216 | 0.1248 | 0.048* | |
C15 | 0.4869 (3) | 0.6425 (3) | 0.3486 (3) | 0.0485 (7) | |
H15 | 0.5367 | 0.5687 | 0.3796 | 0.058* | |
C16 | 0.4478 (3) | 0.7376 (3) | 0.4292 (3) | 0.0536 (8) | |
H16 | 0.4655 | 0.7425 | 0.529 | 0.064* | |
O2 | 0.3781 (2) | 0.8282 (2) | 0.34799 (18) | 0.0497 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.02943 (14) | 0.05026 (19) | 0.03929 (16) | 0.00953 (11) | 0.00565 (11) | 0.00671 (12) |
C1 | 0.0347 (13) | 0.0352 (15) | 0.0328 (14) | 0.0118 (11) | 0.0137 (11) | 0.0137 (12) |
C2 | 0.0359 (13) | 0.0415 (16) | 0.0287 (13) | 0.0129 (12) | 0.0074 (11) | 0.0138 (12) |
C3 | 0.0340 (13) | 0.0568 (19) | 0.0322 (14) | 0.0238 (13) | 0.0100 (11) | 0.0174 (14) |
C4 | 0.0460 (15) | 0.0521 (18) | 0.0322 (14) | 0.0263 (13) | 0.0158 (12) | 0.0196 (14) |
C5 | 0.0491 (15) | 0.0403 (16) | 0.0288 (14) | 0.0168 (13) | 0.0118 (12) | 0.0145 (12) |
C6 | 0.0350 (13) | 0.0345 (15) | 0.0320 (14) | 0.0081 (11) | 0.0086 (11) | 0.0077 (12) |
C41 | 0.0598 (18) | 0.079 (2) | 0.0457 (17) | 0.0405 (17) | 0.0216 (15) | 0.0137 (16) |
C51 | 0.0652 (19) | 0.0507 (19) | 0.0482 (17) | 0.0225 (15) | 0.0184 (15) | 0.0035 (15) |
N1 | 0.0270 (10) | 0.0337 (12) | 0.0272 (11) | 0.0072 (9) | 0.0062 (9) | 0.0066 (9) |
N2 | 0.0243 (11) | 0.0449 (14) | 0.0277 (11) | 0.0083 (10) | 0.0033 (9) | 0.0062 (10) |
C7 | 0.0366 (13) | 0.0369 (15) | 0.0268 (13) | 0.0101 (11) | 0.0081 (11) | 0.0113 (12) |
C8 | 0.0400 (18) | 0.033 (5) | 0.032 (3) | 0.0082 (19) | 0.010 (2) | 0.010 (2) |
C9 | 0.024 (3) | 0.043 (4) | 0.041 (3) | 0.003 (2) | 0.002 (2) | 0.009 (3) |
C10 | 0.047 (5) | 0.040 (2) | 0.036 (2) | 0.004 (4) | 0.006 (4) | −0.0031 (18) |
C11 | 0.045 (4) | 0.042 (3) | 0.043 (3) | 0.009 (2) | 0.015 (3) | −0.005 (2) |
O1 | 0.034 (2) | 0.048 (3) | 0.048 (2) | 0.0078 (17) | 0.0115 (17) | −0.0059 (16) |
C80 | 0.0400 (18) | 0.033 (5) | 0.032 (3) | 0.0082 (19) | 0.010 (2) | 0.010 (2) |
C90 | 0.024 (3) | 0.043 (4) | 0.041 (3) | 0.003 (2) | 0.002 (2) | 0.009 (3) |
C100 | 0.047 (5) | 0.040 (2) | 0.036 (2) | 0.004 (4) | 0.006 (4) | −0.0031 (18) |
C110 | 0.045 (4) | 0.042 (3) | 0.043 (3) | 0.009 (2) | 0.015 (3) | −0.005 (2) |
O100 | 0.034 (2) | 0.048 (3) | 0.048 (2) | 0.0078 (17) | 0.0115 (17) | −0.0059 (16) |
C12 | 0.0253 (12) | 0.0394 (15) | 0.0339 (14) | 0.0040 (11) | 0.0100 (11) | 0.0052 (12) |
C13 | 0.0260 (12) | 0.0419 (16) | 0.0280 (13) | 0.0070 (11) | 0.0058 (10) | −0.0001 (12) |
C14 | 0.0397 (14) | 0.0473 (17) | 0.0350 (15) | 0.0157 (13) | 0.0067 (12) | 0.0015 (13) |
C15 | 0.0437 (15) | 0.059 (2) | 0.0469 (17) | 0.0229 (14) | 0.0053 (14) | 0.0119 (15) |
C16 | 0.0535 (17) | 0.081 (2) | 0.0333 (15) | 0.0348 (17) | 0.0047 (14) | 0.0123 (16) |
O2 | 0.0548 (11) | 0.0684 (13) | 0.0329 (10) | 0.0340 (10) | 0.0060 (9) | 0.0014 (10) |
C1—C2 | 1.380 (3) | C9—C10 | 1.403 (10) |
C1—C6 | 1.397 (3) | C9—H9 | 0.95 |
C1—N1 | 1.413 (3) | C10—C11 | 1.344 (7) |
C2—N2 | 1.383 (3) | C10—H10 | 0.95 |
C2—C3 | 1.391 (3) | C11—O1 | 1.364 (8) |
C3—C4 | 1.374 (4) | C11—H11 | 0.95 |
C3—H3 | 0.95 | C80—C90 | 1.342 (16) |
C4—C5 | 1.423 (3) | C80—O100 | 1.389 (17) |
C4—C41 | 1.504 (3) | C90—C100 | 1.405 (12) |
C5—C6 | 1.382 (3) | C90—H90 | 0.95 |
C5—C51 | 1.501 (4) | C100—C110 | 1.332 (10) |
C6—H6 | 0.95 | C100—H100 | 0.95 |
C41—H41A | 0.98 | C110—O100 | 1.362 (13) |
C41—H41B | 0.98 | C110—H110 | 0.95 |
C41—H41C | 0.98 | C12—C13 | 1.491 (3) |
C51—H51A | 0.98 | C12—H12A | 0.99 |
C51—H51B | 0.98 | C12—H12B | 0.99 |
C51—H51C | 0.98 | C13—C14 | 1.329 (3) |
N1—C7 | 1.351 (3) | C13—O2 | 1.372 (3) |
N1—C12 | 1.483 (3) | C14—C15 | 1.422 (3) |
N2—C7 | 1.337 (3) | C14—H14 | 0.95 |
N2—H2 | 0.84 (3) | C15—C16 | 1.324 (4) |
C7—C8 | 1.384 (10) | C15—H15 | 0.95 |
C7—C80 | 1.488 (15) | C16—O2 | 1.375 (3) |
C8—C9 | 1.345 (12) | C16—H16 | 0.95 |
C8—O1 | 1.368 (12) | ||
C2—C1—C6 | 121.4 (2) | O1—C8—C7 | 118.8 (11) |
C2—C1—N1 | 106.8 (2) | C8—C9—C10 | 109.0 (7) |
C6—C1—N1 | 131.8 (2) | C8—C9—H9 | 125.5 |
C1—C2—N2 | 106.8 (2) | C10—C9—H9 | 125.5 |
C1—C2—C3 | 120.9 (2) | C11—C10—C9 | 104.1 (7) |
N2—C2—C3 | 132.3 (2) | C11—C10—H10 | 127.9 |
C4—C3—C2 | 118.9 (2) | C9—C10—H10 | 127.9 |
C4—C3—H3 | 120.5 | C10—C11—O1 | 112.6 (6) |
C2—C3—H3 | 120.5 | C10—C11—H11 | 123.7 |
C3—C4—C5 | 120.1 (2) | O1—C11—H11 | 123.7 |
C3—C4—C41 | 119.4 (2) | C11—O1—C8 | 105.0 (6) |
C5—C4—C41 | 120.4 (3) | C90—C80—O100 | 110.6 (11) |
C6—C5—C4 | 121.0 (2) | C90—C80—C7 | 135.3 (17) |
C6—C5—C51 | 119.2 (2) | O100—C80—C7 | 114.1 (16) |
C4—C5—C51 | 119.9 (2) | C80—C90—C100 | 106.7 (10) |
C5—C6—C1 | 117.7 (2) | C80—C90—H90 | 126.6 |
C5—C6—H6 | 121.1 | C100—C90—H90 | 126.6 |
C1—C6—H6 | 121.1 | C110—C100—C90 | 106.4 (12) |
C4—C41—H41A | 109.5 | C110—C100—H100 | 126.8 |
C4—C41—H41B | 109.5 | C90—C100—H100 | 126.8 |
H41A—C41—H41B | 109.5 | C100—C110—O100 | 112.3 (12) |
C4—C41—H41C | 109.5 | C100—C110—H110 | 123.9 |
H41A—C41—H41C | 109.5 | O100—C110—H110 | 123.9 |
H41B—C41—H41C | 109.5 | C110—O100—C80 | 103.9 (10) |
C5—C51—H51A | 109.5 | N1—C12—C13 | 112.61 (17) |
C5—C51—H51B | 109.5 | N1—C12—H12A | 109.1 |
H51A—C51—H51B | 109.5 | C13—C12—H12A | 109.1 |
C5—C51—H51C | 109.5 | N1—C12—H12B | 109.1 |
H51A—C51—H51C | 109.5 | C13—C12—H12B | 109.1 |
H51B—C51—H51C | 109.5 | H12A—C12—H12B | 107.8 |
C7—N1—C1 | 107.74 (19) | C14—C13—O2 | 110.5 (2) |
C7—N1—C12 | 129.1 (2) | C14—C13—C12 | 133.6 (2) |
C1—N1—C12 | 123.12 (19) | O2—C13—C12 | 115.9 (2) |
C7—N2—C2 | 109.6 (2) | C13—C14—C15 | 106.6 (2) |
C7—N2—H2 | 124.6 (19) | C13—C14—H14 | 126.7 |
C2—N2—H2 | 125.3 (19) | C15—C14—H14 | 126.7 |
N2—C7—N1 | 109.0 (2) | C16—C15—C14 | 106.9 (2) |
N2—C7—C8 | 121.5 (7) | C16—C15—H15 | 126.5 |
N1—C7—C8 | 129.4 (7) | C14—C15—H15 | 126.5 |
N2—C7—C80 | 123.4 (10) | C15—C16—O2 | 110.5 (2) |
N1—C7—C80 | 127.6 (9) | C15—C16—H16 | 124.8 |
C9—C8—O1 | 109.3 (7) | O2—C16—H16 | 124.8 |
C9—C8—C7 | 131.7 (12) | C13—O2—C16 | 105.5 (2) |
C6—C1—C2—N2 | 179.83 (19) | N2—C7—C8—O1 | −174 (3) |
N1—C1—C2—N2 | 0.2 (2) | N1—C7—C8—O1 | 5 (8) |
C6—C1—C2—C3 | −0.4 (3) | C80—C7—C8—O1 | −30.100 |
N1—C1—C2—C3 | 179.99 (19) | O1—C8—C9—C10 | −1 (6) |
C1—C2—C3—C4 | −0.5 (3) | C7—C8—C9—C10 | −177 (6) |
N2—C2—C3—C4 | 179.3 (2) | C8—C9—C10—C11 | 1 (3) |
C2—C3—C4—C5 | 1.1 (3) | C9—C10—C11—O1 | 0.1 (8) |
C2—C3—C4—C41 | −177.6 (2) | C10—C11—O1—C8 | −1 (3) |
C3—C4—C5—C6 | −1.0 (3) | C9—C8—O1—C11 | 1 (5) |
C41—C4—C5—C6 | 177.7 (2) | C7—C8—O1—C11 | 178 (4) |
C3—C4—C5—C51 | 179.8 (2) | N2—C7—C80—C90 | −175 (9) |
C41—C4—C5—C51 | −1.5 (3) | N1—C7—C80—C90 | 2 (15) |
C4—C5—C6—C1 | 0.2 (3) | C8—C7—C80—C90 | 150.100 |
C51—C5—C6—C1 | 179.4 (2) | N2—C7—C80—O100 | 5 (10) |
C2—C1—C6—C5 | 0.5 (3) | N1—C7—C80—O100 | −178 (4) |
N1—C1—C6—C5 | −180.0 (2) | C8—C7—C80—O100 | −30.100 |
C2—C1—N1—C7 | −0.8 (2) | O100—C80—C90—C100 | −1 (9) |
C6—C1—N1—C7 | 179.6 (2) | C7—C80—C90—C100 | 179 (10) |
C2—C1—N1—C12 | 177.46 (17) | C80—C90—C100—C110 | 1 (5) |
C6—C1—N1—C12 | −2.1 (3) | C90—C100—C110—O100 | −0.3 (15) |
C1—C2—N2—C7 | 0.5 (2) | C100—C110—O100—C80 | 0 (5) |
C3—C2—N2—C7 | −179.3 (2) | C90—C80—O100—C110 | 1 (9) |
C2—N2—C7—N1 | −1.0 (2) | C7—C80—O100—C110 | −179 (6) |
C2—N2—C7—C8 | 179 (4) | C7—N1—C12—C13 | −94.9 (3) |
C2—N2—C7—C80 | 177 (5) | C1—N1—C12—C13 | 87.2 (2) |
C1—N1—C7—N2 | 1.1 (2) | N1—C12—C13—C14 | 110.9 (3) |
C12—N1—C7—N2 | −177.01 (18) | N1—C12—C13—O2 | −69.4 (3) |
C1—N1—C7—C8 | −178 (4) | O2—C13—C14—C15 | 0.3 (3) |
C12—N1—C7—C8 | 4 (4) | C12—C13—C14—C15 | −179.9 (2) |
C1—N1—C7—C80 | −177 (6) | C13—C14—C15—C16 | −0.1 (3) |
C12—N1—C7—C80 | 5 (6) | C14—C15—C16—O2 | −0.1 (3) |
N2—C7—C8—C9 | 1 (9) | C14—C13—O2—C16 | −0.4 (3) |
N1—C7—C8—C9 | −180 (5) | C12—C13—O2—C16 | 179.81 (19) |
C80—C7—C8—C9 | 140.100 | C15—C16—O2—C13 | 0.3 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···Br1 | 0.84 (3) | 2.38 (3) | 3.170 (2) | 155 (2) |
Experimental details
(I) | (II) | (III) | |
Crystal data | |||
Chemical formula | C16H12N2O2 | C16H13N2O2+·Cl−·H2O | C18H17N2O2+·Br− |
Mr | 264.28 | 318.75 | 373.24 |
Crystal system, space group | Monoclinic, P21/n | Monoclinic, Cc | Triclinic, P1 |
Temperature (K) | 200 | 200 | 200 |
a, b, c (Å) | 9.3916 (17), 12.398 (2), 11.313 (2) | 4.8700 (7), 18.694 (3), 17.196 (3) | 9.1903 (10), 9.619 (1), 9.7443 (11) |
α, β, γ (°) | 90, 105.216 (6), 90 | 90, 98.050 (5), 90 | 93.132 (3), 101.859 (3), 101.684 (3) |
V (Å3) | 1271.1 (4) | 1550.1 (4) | 821.38 (16) |
Z | 4 | 4 | 2 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.09 | 0.26 | 2.51 |
Crystal size (mm) | 0.60 × 0.40 × 0.40 | 0.60 × 0.50 × 0.20 | 0.50 × 0.40 × 0.30 |
Data collection | |||
Diffractometer | Bruker SMART X2S benchtop diffractometer | Bruker SMART X2S benchtop diffractometer | Bruker SMART X2S benchtop diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2013) | Multi-scan (SADABS; Bruker, 2013) | Multi-scan (SADABS; Bruker, 2013) |
Tmin, Tmax | 0.89, 0.96 | 0.86, 0.95 | 0.35, 0.52 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8001, 2241, 1764 | 7314, 2685, 2420 | 9745, 2915, 2374 |
Rint | 0.029 | 0.067 | 0.043 |
(sin θ/λ)max (Å−1) | 0.597 | 0.595 | 0.602 |
Refinement | |||
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.104, 1.08 | 0.037, 0.094, 1.07 | 0.028, 0.063, 0.96 |
No. of reflections | 2241 | 2685 | 2915 |
No. of parameters | 227 | 257 | 230 |
No. of restraints | 25 | 92 | 60 |
H-atom treatment | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.13, −0.18 | 0.15, −0.21 | 0.42, −0.36 |
Absolute structure | ? | Flack x determined using 1034 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) | ? |
Absolute structure parameter | ? | 0.10 (5) | ? |
Computer programs: APEX2 (Bruker, 2013), SAINT (Bruker, 2013), SHELXS97 (Sheldrick, 2008), SHELXL2013 (Sheldrick, 2008), PLATON (Spek, 2009) and Mercury (Macrae et al., 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
OW—HWA···Cl1 | 0.82 (5) | 2.24 (5) | 3.066 (4) | 178.(5) |
OW—HWB···Cl1i | 0.90 (7) | 2.18 (7) | 3.068 (4) | 169.(5) |
N2—H2···OW | 0.92 (6) | 1.72 (6) | 2.628 (4) | 170.(6) |
Symmetry code: (i) x−1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···Br1 | 0.84 (3) | 2.38 (3) | 3.170 (2) | 155.(2) |
System | Interactionb | M06/6-31+G(d) | M06/6-311++G(d,p) | M06-2X/6-31+G(d) | M06-2X/cc-pVDZ | B3LYP/6-31+G(d) |
(Ia) | π(Fn)···π(Fn) | -43.9 (-38.4) | -49.6 (-40.5) | -48.6 (-43.0) | -49.0 (-37.86) | -8.6 (8.2) |
(Ia)c | π(Fn)···π(Fn) | -27.9 (-24.1) | ||||
(Ia) | π(Bz)···π(Bz) | -35.1 (-28.7) | -43.6 (-37.3) | |||
(Ia)c | π(Bz)···π(Bz) | -24.2 (-20.7) | ||||
(Ia) | π(Bz)···π(Fn) | -43.1 (-27.38) | -47.0 (-41.0) | |||
(Ia)c | π(Bz)···π(Fn) | -26.3 (-22.6) | ||||
(Ib) | π(BzIm)···π(BzIm) | -45.6 (-39.8) | ||||
(II)d | π(BzIm)···π(ImFn) | -57.4 (-48.5) | ||||
(III)e | π(BzIm)···π(BzIm) | -64.0 (-55.0) |
Notes: (a) energies in parenthesis have been corrected for BSSE using the CP method (see Experimental, Sect 2.2); (b) primary π–π interaction (Fn = furan on the 2-position of the benzimidazole, Bz = benzene ring of the benzimidazole, BzIm = benzimidazole, and ImFn = imidazole and furan); (c) calculations performed after replacing the methylfuran substituent with an H atom; (d) calculations were performed with hydrogen chloride and water of hydration removed; (e) calculations were performed with hydrogen bromide removed. |