The crystal structure of morphine 3-(1-naphthoate), (or 7,8-didehydro-4,5-epoxy-17-methylmorphinan-6-yl naphthalene-1-carboxylate), C
28H
25NO
4, was determined at 123 K. An intramolecular hydrogen bond exists between the secondary alcohol and the naphthoate group. Within the crystal structure, there is no significant π–π stacking, but there are significant intermolecular C—H
π interactions.
Supporting information
CCDC reference: 227879
Key indicators
- Single-crystal X-ray study
- T = 123 K
- Mean (C-C) = 0.003 Å
- R factor = 0.036
- wR factor = 0.082
- Data-to-parameter ratio = 9.7
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.99
Alert level G
REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
From the CIF: _diffrn_reflns_theta_max 28.28
From the CIF: _reflns_number_total 2909
Count of symmetry unique reflns 2953
Completeness (_total/calc) 98.51%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 0
Fraction of Friedel pairs measured 0.000
Are heavy atom types Z>Si present no
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
1 ALERT level C = Check and explain
1 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: COLLECT (Nonius BV, 1997-2000); cell refinement: HKL SCALEPACK (Otwinowski & Minor, 1997); data reduction: HKL DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
7,8-didehydro-4,5-epoxy-17-methylmorphinan-6-(naphthalene-1-carboxylate)
top
Crystal data top
C28H25NO4 | F(000) = 464 |
Mr = 439.49 | Dx = 1.325 Mg m−3 |
Monoclinic, P21 | Melting point = 443–445 K |
Hall symbol: P 2yb | Mo Kα radiation, λ = 0.71073 Å |
a = 12.7421 (2) Å | Cell parameters from 14873 reflections |
b = 7.1908 (1) Å | θ = 2.8–28.3° |
c = 12.9536 (3) Å | µ = 0.09 mm−1 |
β = 111.900 (1)° | T = 123 K |
V = 1101.23 (4) Å3 | Acicular, colourless |
Z = 2 | 0.24 × 0.20 × 0.12 mm |
Data collection top
Nonius KappaCCD diffractometer | 2423 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.044 |
Horizonally mounted graphite crystal monochromator | θmax = 28.3°, θmin = 2.8° |
Detector resolution: 9 pixels mm-1 | h = −16→16 |
CCD rotation images, thick slices scans | k = −9→9 |
14873 measured reflections | l = −17→17 |
2909 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.082 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0416P)2 + 0.1452P] where P = (Fo2 + 2Fc2)/3 |
2909 reflections | (Δ/σ)max = 0.002 |
300 parameters | Δρmax = 0.19 e Å−3 |
1 restraint | Δρmin = −0.20 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. The absolute structure cannot be reliably determined therefore Friedel pairs
have been merged. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.97625 (15) | 0.5834 (3) | 0.80473 (14) | 0.0197 (4) | |
C2 | 0.95002 (15) | 0.6995 (3) | 0.87606 (15) | 0.0217 (4) | |
C3 | 1.03452 (17) | 0.7424 (3) | 0.97782 (15) | 0.0246 (4) | |
H3 | 1.0170 | 0.8178 | 1.0294 | 0.030* | |
C4 | 1.14411 (16) | 0.6770 (3) | 1.00531 (15) | 0.0243 (4) | |
H4 | 1.2013 | 0.7128 | 1.0738 | 0.029* | |
C5 | 1.17139 (15) | 0.5579 (3) | 0.93257 (15) | 0.0213 (4) | |
C6 | 1.08361 (15) | 0.5091 (3) | 0.83582 (14) | 0.0180 (4) | |
C7 | 1.09088 (15) | 0.3931 (3) | 0.74229 (14) | 0.0196 (4) | |
C8 | 0.98416 (16) | 0.4608 (3) | 0.64533 (15) | 0.0215 (4) | |
H8 | 0.9469 | 0.3528 | 0.5969 | 0.026* | |
C9 | 1.00760 (16) | 0.6150 (3) | 0.57366 (14) | 0.0243 (4) | |
H9 | 1.0198 | 0.5501 | 0.5108 | 0.029* | |
C10 | 1.11380 (16) | 0.7231 (3) | 0.63347 (15) | 0.0258 (4) | |
H10 | 1.1150 | 0.8526 | 0.6196 | 0.031* | |
C11 | 1.20582 (17) | 0.6431 (3) | 0.70494 (16) | 0.0269 (4) | |
H11 | 1.2729 | 0.7143 | 0.7381 | 0.032* | |
C12 | 1.20539 (16) | 0.4407 (3) | 0.73428 (16) | 0.0238 (4) | |
H12 | 1.2150 | 0.3639 | 0.6740 | 0.029* | |
C13 | 1.29713 (16) | 0.3860 (3) | 0.84632 (17) | 0.0261 (4) | |
H13 | 1.3718 | 0.4161 | 0.8415 | 0.031* | |
C14 | 1.28953 (16) | 0.4995 (3) | 0.94609 (16) | 0.0274 (4) | |
H14A | 1.3217 | 0.4235 | 1.0145 | 0.033* | |
H14B | 1.3369 | 0.6123 | 0.9566 | 0.033* | |
C15 | 1.08588 (17) | 0.1840 (3) | 0.76422 (16) | 0.0255 (4) | |
H15A | 1.0153 | 0.1564 | 0.7766 | 0.031* | |
H15B | 1.0839 | 0.1137 | 0.6978 | 0.031* | |
C16 | 1.18642 (18) | 0.1202 (3) | 0.86447 (17) | 0.0300 (5) | |
H16A | 1.1805 | 0.1712 | 0.9331 | 0.036* | |
H16B | 1.1861 | −0.0172 | 0.8692 | 0.036* | |
C17 | 1.39082 (19) | 0.1051 (4) | 0.94437 (18) | 0.0410 (6) | |
H17A | 1.3874 | −0.0310 | 0.9408 | 0.061* | |
H17B | 1.3917 | 0.1466 | 1.0168 | 0.061* | |
H17C | 1.4597 | 0.1477 | 0.9349 | 0.061* | |
C18 | 0.79496 (15) | 0.8781 (3) | 0.75925 (15) | 0.0224 (4) | |
C19 | 0.67468 (16) | 0.9225 (3) | 0.73928 (15) | 0.0235 (4) | |
C20 | 0.61200 (17) | 0.7891 (3) | 0.76669 (17) | 0.0306 (5) | |
H20 | 0.6470 | 0.6765 | 0.8007 | 0.037* | |
C21 | 0.49613 (19) | 0.8184 (4) | 0.7446 (2) | 0.0398 (6) | |
H21 | 0.4533 | 0.7250 | 0.7629 | 0.048* | |
C22 | 0.44587 (18) | 0.9796 (4) | 0.69729 (19) | 0.0386 (6) | |
H22 | 0.3679 | 0.9979 | 0.6834 | 0.046* | |
C23 | 0.50686 (17) | 1.1216 (4) | 0.66800 (16) | 0.0304 (5) | |
C24 | 0.45392 (19) | 1.2879 (4) | 0.61676 (19) | 0.0372 (5) | |
H24 | 0.3758 | 1.3056 | 0.6022 | 0.045* | |
C25 | 0.51224 (19) | 1.4235 (4) | 0.58763 (18) | 0.0391 (6) | |
H25 | 0.4750 | 1.5340 | 0.5525 | 0.047* | |
C26 | 0.62925 (19) | 1.3980 (4) | 0.61029 (18) | 0.0363 (5) | |
H26 | 0.6705 | 1.4930 | 0.5910 | 0.044* | |
C27 | 0.68311 (17) | 1.2393 (3) | 0.65931 (17) | 0.0294 (5) | |
H27 | 0.7615 | 1.2256 | 0.6741 | 0.035* | |
C28 | 0.62430 (16) | 1.0943 (3) | 0.68863 (16) | 0.0251 (4) | |
N1 | 1.29231 (14) | 0.1822 (3) | 0.85621 (14) | 0.0296 (4) | |
O1 | 0.90821 (10) | 0.5354 (2) | 0.69825 (10) | 0.0220 (3) | |
O2 | 0.91084 (12) | 0.7307 (2) | 0.52420 (11) | 0.0329 (4) | |
H2 | 0.8902 | 0.7733 | 0.5740 | 0.049* | |
O3 | 0.83989 (11) | 0.7679 (2) | 0.85129 (11) | 0.0253 (3) | |
O4 | 0.84723 (11) | 0.9268 (2) | 0.70298 (11) | 0.0284 (3) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0219 (9) | 0.0190 (10) | 0.0191 (9) | −0.0015 (8) | 0.0087 (8) | 0.0027 (8) |
C2 | 0.0228 (9) | 0.0206 (9) | 0.0244 (9) | 0.0033 (8) | 0.0118 (8) | 0.0033 (8) |
C3 | 0.0346 (10) | 0.0212 (10) | 0.0219 (9) | 0.0034 (9) | 0.0150 (8) | −0.0008 (8) |
C4 | 0.0289 (10) | 0.0227 (10) | 0.0190 (9) | −0.0006 (9) | 0.0062 (8) | −0.0012 (8) |
C5 | 0.0242 (9) | 0.0186 (9) | 0.0208 (9) | 0.0014 (8) | 0.0079 (8) | 0.0021 (8) |
C6 | 0.0223 (9) | 0.0148 (9) | 0.0189 (8) | −0.0018 (8) | 0.0099 (7) | 0.0013 (7) |
C7 | 0.0231 (9) | 0.0181 (9) | 0.0187 (8) | −0.0006 (8) | 0.0091 (7) | −0.0019 (8) |
C8 | 0.0252 (9) | 0.0202 (9) | 0.0208 (8) | −0.0005 (8) | 0.0106 (7) | −0.0037 (8) |
C9 | 0.0284 (10) | 0.0274 (10) | 0.0180 (8) | 0.0034 (9) | 0.0097 (8) | 0.0014 (8) |
C10 | 0.0320 (10) | 0.0228 (10) | 0.0269 (10) | −0.0030 (9) | 0.0161 (9) | 0.0001 (9) |
C11 | 0.0250 (10) | 0.0286 (11) | 0.0300 (10) | −0.0039 (9) | 0.0136 (9) | 0.0027 (9) |
C12 | 0.0247 (10) | 0.0247 (10) | 0.0257 (9) | 0.0031 (9) | 0.0137 (8) | 0.0013 (9) |
C13 | 0.0216 (9) | 0.0288 (11) | 0.0294 (10) | 0.0040 (9) | 0.0112 (8) | 0.0009 (9) |
C14 | 0.0198 (9) | 0.0293 (11) | 0.0283 (10) | 0.0013 (9) | 0.0033 (8) | −0.0019 (9) |
C15 | 0.0314 (11) | 0.0185 (10) | 0.0270 (10) | −0.0008 (9) | 0.0115 (8) | −0.0008 (9) |
C16 | 0.0406 (12) | 0.0207 (10) | 0.0296 (10) | 0.0054 (10) | 0.0141 (9) | 0.0018 (9) |
C17 | 0.0423 (13) | 0.0388 (13) | 0.0369 (12) | 0.0179 (12) | 0.0089 (10) | 0.0018 (11) |
C18 | 0.0240 (9) | 0.0194 (9) | 0.0238 (9) | −0.0001 (8) | 0.0091 (8) | −0.0026 (8) |
C19 | 0.0232 (9) | 0.0247 (10) | 0.0242 (9) | 0.0003 (9) | 0.0108 (8) | −0.0027 (9) |
C20 | 0.0282 (10) | 0.0320 (11) | 0.0341 (11) | 0.0004 (10) | 0.0147 (9) | 0.0012 (10) |
C21 | 0.0296 (11) | 0.0466 (15) | 0.0495 (13) | −0.0026 (11) | 0.0218 (10) | 0.0056 (12) |
C22 | 0.0227 (10) | 0.0537 (16) | 0.0424 (12) | 0.0035 (11) | 0.0156 (10) | 0.0030 (12) |
C23 | 0.0265 (10) | 0.0385 (12) | 0.0273 (10) | 0.0039 (10) | 0.0112 (8) | −0.0025 (10) |
C24 | 0.0299 (11) | 0.0462 (14) | 0.0357 (11) | 0.0108 (11) | 0.0123 (9) | 0.0008 (11) |
C25 | 0.0409 (13) | 0.0368 (13) | 0.0356 (12) | 0.0140 (12) | 0.0098 (10) | 0.0035 (11) |
C26 | 0.0364 (12) | 0.0328 (12) | 0.0372 (12) | 0.0015 (11) | 0.0107 (10) | 0.0032 (11) |
C27 | 0.0259 (10) | 0.0272 (11) | 0.0322 (10) | 0.0006 (9) | 0.0075 (9) | 0.0010 (9) |
C28 | 0.0225 (9) | 0.0289 (11) | 0.0229 (9) | 0.0020 (9) | 0.0074 (8) | −0.0031 (9) |
N1 | 0.0299 (9) | 0.0277 (9) | 0.0306 (9) | 0.0111 (8) | 0.0108 (7) | 0.0028 (8) |
O1 | 0.0196 (6) | 0.0252 (7) | 0.0212 (6) | −0.0011 (6) | 0.0074 (5) | −0.0025 (6) |
O2 | 0.0333 (8) | 0.0370 (9) | 0.0267 (7) | 0.0083 (7) | 0.0093 (6) | 0.0097 (7) |
O3 | 0.0243 (7) | 0.0276 (8) | 0.0276 (7) | 0.0060 (6) | 0.0136 (6) | 0.0031 (6) |
O4 | 0.0275 (7) | 0.0277 (8) | 0.0346 (7) | 0.0019 (7) | 0.0170 (6) | 0.0051 (7) |
Geometric parameters (Å, º) top
C1—O1 | 1.372 (2) | C15—C16 | 1.516 (3) |
C1—C2 | 1.376 (3) | C15—H15A | 0.9900 |
C1—C6 | 1.381 (2) | C15—H15B | 0.9900 |
C2—C3 | 1.390 (3) | C16—N1 | 1.462 (3) |
C2—O3 | 1.406 (2) | C16—H16A | 0.9900 |
C3—C4 | 1.388 (3) | C16—H16B | 0.9900 |
C3—H3 | 0.9500 | C17—N1 | 1.455 (3) |
C4—C5 | 1.410 (3) | C17—H17A | 0.9800 |
C4—H4 | 0.9500 | C17—H17B | 0.9800 |
C5—C6 | 1.378 (3) | C17—H17C | 0.9800 |
C5—C14 | 1.509 (3) | C18—O4 | 1.208 (2) |
C6—C7 | 1.502 (2) | C18—O3 | 1.367 (2) |
C7—C15 | 1.536 (3) | C18—C19 | 1.491 (3) |
C7—C12 | 1.540 (3) | C19—C20 | 1.377 (3) |
C7—C8 | 1.546 (3) | C19—C28 | 1.433 (3) |
C8—O1 | 1.480 (2) | C20—C21 | 1.411 (3) |
C8—C9 | 1.545 (3) | C20—H20 | 0.9500 |
C8—H8 | 1.0000 | C21—C22 | 1.355 (4) |
C9—O2 | 1.426 (2) | C21—H21 | 0.9500 |
C9—C10 | 1.501 (3) | C22—C23 | 1.418 (3) |
C9—H9 | 1.0000 | C22—H22 | 0.9500 |
C10—C11 | 1.324 (3) | C23—C24 | 1.411 (4) |
C10—H10 | 0.9500 | C23—C28 | 1.432 (3) |
C11—C12 | 1.504 (3) | C24—C25 | 1.362 (4) |
C11—H11 | 0.9500 | C24—H24 | 0.9500 |
C12—C13 | 1.537 (3) | C25—C26 | 1.420 (3) |
C12—H12 | 1.0000 | C25—H25 | 0.9500 |
C13—N1 | 1.474 (3) | C26—C27 | 1.360 (3) |
C13—C14 | 1.562 (3) | C26—H26 | 0.9500 |
C13—H13 | 1.0000 | C27—C28 | 1.416 (3) |
C14—H14A | 0.9900 | C27—H27 | 0.9500 |
C14—H14B | 0.9900 | O2—H2 | 0.8400 |
| | | |
O1—C1—C2 | 127.39 (16) | H14A—C14—H14B | 107.6 |
O1—C1—C6 | 112.44 (15) | C16—C15—C7 | 112.01 (17) |
C2—C1—C6 | 120.07 (16) | C16—C15—H15A | 109.2 |
C1—C2—C3 | 118.37 (17) | C7—C15—H15A | 109.2 |
C1—C2—O3 | 122.05 (16) | C16—C15—H15B | 109.2 |
C3—C2—O3 | 119.51 (16) | C7—C15—H15B | 109.2 |
C4—C3—C2 | 121.14 (17) | H15A—C15—H15B | 107.9 |
C4—C3—H3 | 119.4 | N1—C16—C15 | 110.68 (16) |
C2—C3—H3 | 119.4 | N1—C16—H16A | 109.5 |
C3—C4—C5 | 120.65 (17) | C15—C16—H16A | 109.5 |
C3—C4—H4 | 119.7 | N1—C16—H16B | 109.5 |
C5—C4—H4 | 119.7 | C15—C16—H16B | 109.5 |
C6—C5—C4 | 116.33 (17) | H16A—C16—H16B | 108.1 |
C6—C5—C14 | 118.11 (17) | N1—C17—H17A | 109.5 |
C4—C5—C14 | 125.14 (17) | N1—C17—H17B | 109.5 |
C5—C6—C1 | 123.13 (17) | H17A—C17—H17B | 109.5 |
C5—C6—C7 | 126.97 (17) | N1—C17—H17C | 109.5 |
C1—C6—C7 | 109.39 (15) | H17A—C17—H17C | 109.5 |
C6—C7—C15 | 112.05 (15) | H17B—C17—H17C | 109.5 |
C6—C7—C12 | 106.01 (15) | O4—C18—O3 | 123.25 (16) |
C15—C7—C12 | 109.64 (16) | O4—C18—C19 | 126.59 (17) |
C6—C7—C8 | 100.37 (15) | O3—C18—C19 | 110.15 (15) |
C15—C7—C8 | 111.98 (16) | C20—C19—C28 | 120.98 (18) |
C12—C7—C8 | 116.34 (15) | C20—C19—C18 | 117.65 (19) |
O1—C8—C9 | 108.95 (16) | C28—C19—C18 | 121.31 (17) |
O1—C8—C7 | 105.49 (13) | C19—C20—C21 | 120.5 (2) |
C9—C8—C7 | 113.94 (15) | C19—C20—H20 | 119.8 |
O1—C8—H8 | 109.4 | C21—C20—H20 | 119.8 |
C9—C8—H8 | 109.4 | C22—C21—C20 | 120.1 (2) |
C7—C8—H8 | 109.4 | C22—C21—H21 | 119.9 |
O2—C9—C10 | 113.09 (17) | C20—C21—H21 | 119.9 |
O2—C9—C8 | 111.10 (15) | C21—C22—C23 | 121.5 (2) |
C10—C9—C8 | 113.60 (15) | C21—C22—H22 | 119.2 |
O2—C9—H9 | 106.1 | C23—C22—H22 | 119.2 |
C10—C9—H9 | 106.1 | C24—C23—C22 | 121.50 (19) |
C8—C9—H9 | 106.1 | C24—C23—C28 | 119.1 (2) |
C11—C10—C9 | 121.94 (19) | C22—C23—C28 | 119.4 (2) |
C11—C10—H10 | 119.0 | C25—C24—C23 | 121.5 (2) |
C9—C10—H10 | 119.0 | C25—C24—H24 | 119.2 |
C10—C11—C12 | 120.73 (19) | C23—C24—H24 | 119.2 |
C10—C11—H11 | 119.6 | C24—C25—C26 | 119.3 (2) |
C12—C11—H11 | 119.6 | C24—C25—H25 | 120.3 |
C11—C12—C13 | 114.39 (18) | C26—C25—H25 | 120.3 |
C11—C12—C7 | 108.97 (17) | C27—C26—C25 | 120.9 (2) |
C13—C12—C7 | 106.59 (15) | C27—C26—H26 | 119.6 |
C11—C12—H12 | 108.9 | C25—C26—H26 | 119.6 |
C13—C12—H12 | 108.9 | C26—C27—C28 | 121.17 (19) |
C7—C12—H12 | 108.9 | C26—C27—H27 | 119.4 |
N1—C13—C12 | 107.15 (17) | C28—C27—H27 | 119.4 |
N1—C13—C14 | 115.47 (18) | C27—C28—C23 | 118.00 (19) |
C12—C13—C14 | 112.80 (16) | C27—C28—C19 | 124.48 (17) |
N1—C13—H13 | 107.0 | C23—C28—C19 | 117.51 (18) |
C12—C13—H13 | 107.0 | C17—N1—C16 | 112.07 (18) |
C14—C13—H13 | 107.0 | C17—N1—C13 | 113.29 (19) |
C5—C14—C13 | 114.61 (16) | C16—N1—C13 | 112.27 (16) |
C5—C14—H14A | 108.6 | C1—O1—C8 | 106.24 (13) |
C13—C14—H14A | 108.6 | C9—O2—H2 | 109.5 |
C5—C14—H14B | 108.6 | C18—O3—C2 | 117.36 (14) |
C13—C14—H14B | 108.6 | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O4 | 0.84 | 2.23 | 3.067 (2) | 171 |
C3—H3···Cg1i | 0.95 | 2.70 | 3.577 (2) | 154 |
C16—H16b···Cg1ii | 0.99 | 3.14 | 4.004 (2) | 146 |
C14—H14a···Cg2iii | 0.99 | 3.24 | 4.068 (2) | 143 |
C25—H25···Cg3iv | 0.95 | 2.84 | 3.643 (3) | 143 |
Symmetry codes: (i) −x, y+1/2, −z; (ii) x, y−1, z; (iii) −x, y−1/2, −z; (iv) −x+1, y+1/2, −z+1. |