Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270112031265/sk3440sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270112031265/sk3440Isup2.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S0108270112031265/sk3440Isup3.cml |
CCDC reference: 899076
To an ethanol (7.5 ml) suspension of 4-{[(1S,2S)-1-hydroxy-2,3-dihydro-1H,1'H-[2,2'-biinden]-2-yl]methyl}benzoic acid (PH46; 0.5 g, 1.31 mmol) was added (S)-(-)-α-methylbenzylamine (0.2 ml, 1.5 mmol, 1.1 equivalents) portionwise. This reaction mixture was stirred for 2 h at 323 K and then left overnight at room temperature. Since no solid material was obtained, the solution was then concentrated under reduced pressure and diethyl ether (2 ml) was added to the flask. A white solid was immediately observed, which was further washed with diethyl ether (3 × 4 ml). The organic solvent was removed using a Pasteur pipette and the resulting white solid was dried in a vacuum oven at 313 K (yield 0.56 g, 85%). Crystals of the (S)-(-)-α-methylbenzylamine salt, (I), were obtained by dissolving the crude material (ca 100 mg) in MeOH (3 ml) in a flat-bottomed sample tube, followed by the addition of diethyl ether (6 ml), which was added until the sample solution became slightly cloudy. The solution was filtered and placed in a dry-box at room temperature. A small amount of tetrahydrofuran (ca 0.5 ml) was added to the diethyl ether–methanol solution. After 5 d, colourless crystals of (I) were obtained (m.p. 467.2–467.9 K). Spectroscopic analysis: 1H NMR (100 MHz, d6-DMSO, δ, p.p.m.): 1.33 (d, 3H, J = 6.7 Hz), 2.68 (d, 1H, J = 13.5 Hz), 2.94, (d, 1H, J = 15.5 Hz), 2.99 (d, 1H, J = 15.5 Hz), 3.17 (d, 1H, J = 13.6 Hz), 3.44 (d, 1H, J = 23.0 Hz), 3.58 (d, 1H, J = 23.0 Hz), 4.12 (q, 1H, J = 6.7 Hz), 5.05 (s, 1H), 5.85 (br s, 1H,), 6.41 (s, 1H), 6.86 (d, 2H, J = 8.2 Hz), 7.08 (td, 1H, J = 7.3 Hz, 1.3 Hz), 7.14–7.44 (m, aromatic 12H), 7.65 (d, 2H, J = 8.2 Hz).
H atoms bonded to heteroatoms were located in a difference map and refined. Other H atoms were positioned geometrically and refined using a riding model (including free rotation about the methyl C—C bond), with C—H = 0.95–0.99 Å, and Uiso(H) = 1.5Ueq(C) for methyl groups or 1.2Ueq(C) otherwise.
Data collection: CrysAlis PRO (Agilent, 2011); cell refinement: CrysAlis PRO (Agilent, 2011); data reduction: CrysAlis PRO (Agilent, 2011); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008).
C8H12N+·C26H21O3− | Dx = 1.260 Mg m−3 |
Mr = 503.61 | Melting point: 467.5 K |
Monoclinic, P21 | Cu Kα radiation, λ = 1.54178 Å |
a = 11.0350 (3) Å | Cell parameters from 17123 reflections |
b = 10.1713 (3) Å | θ = 3.7–75.9° |
c = 11.8533 (3) Å | µ = 0.63 mm−1 |
β = 93.678 (2)° | T = 100 K |
V = 1327.68 (6) Å3 | Block, yellow |
Z = 2 | 0.50 × 0.47 × 0.42 mm |
F(000) = 536 |
Agilent SuperNova Dual diffractometer, with Cu at zero and an Atlas detector | 5221 independent reflections |
Radiation source: SuperNova (Cu) X-ray Source | 5157 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.026 |
Detector resolution: 10.5598 pixels mm-1 | θmax = 74.5°, θmin = 3.7° |
ω scans | h = −13→13 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | k = −11→12 |
Tmin = 0.749, Tmax = 1.000 | l = −14→14 |
25532 measured reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.035 | w = 1/[σ2(Fo2) + (0.075P)2 + 0.250P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.098 | (Δ/σ)max < 0.001 |
S = 1.01 | Δρmax = 0.21 e Å−3 |
5221 reflections | Δρmin = −0.21 e Å−3 |
362 parameters | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.0021 (4) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), with 2343 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.00 (15) |
C8H12N+·C26H21O3− | V = 1327.68 (6) Å3 |
Mr = 503.61 | Z = 2 |
Monoclinic, P21 | Cu Kα radiation |
a = 11.0350 (3) Å | µ = 0.63 mm−1 |
b = 10.1713 (3) Å | T = 100 K |
c = 11.8533 (3) Å | 0.50 × 0.47 × 0.42 mm |
β = 93.678 (2)° |
Agilent SuperNova Dual diffractometer, with Cu at zero and an Atlas detector | 5221 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | 5157 reflections with I > 2σ(I) |
Tmin = 0.749, Tmax = 1.000 | Rint = 0.026 |
25532 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.098 | Δρmax = 0.21 e Å−3 |
S = 1.01 | Δρmin = −0.21 e Å−3 |
5221 reflections | Absolute structure: Flack (1983), with 2343 Friedel pairs |
362 parameters | Absolute structure parameter: 0.00 (15) |
1 restraint |
Experimental. CrysAlisPro, Agilent Technologies, Version 1.171.35.19 (release 27-10-2011 CrysAlis171 .NET) (compiled Oct 27 2011,15:02:11) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.97227 (10) | 0.67327 (12) | 0.83449 (8) | 0.0226 (2) | |
O2 | 0.92573 (9) | 0.46529 (11) | 0.87703 (8) | 0.0191 (2) | |
O3 | 0.89439 (9) | 0.51048 (11) | 0.09869 (8) | 0.0182 (2) | |
H3A | 0.9027 (19) | 0.499 (2) | 0.029 (2) | 0.033 (6)* | |
C1 | 0.91707 (13) | 0.37857 (15) | 0.52630 (12) | 0.0194 (3) | |
H1A | 0.9223 | 0.2909 | 0.4994 | 0.023* | |
C2 | 0.92760 (13) | 0.40249 (15) | 0.64190 (12) | 0.0192 (3) | |
H2A | 0.9402 | 0.3312 | 0.6931 | 0.023* | |
C3 | 0.91987 (11) | 0.52948 (15) | 0.68328 (11) | 0.0156 (3) | |
C4 | 0.94029 (12) | 0.55850 (15) | 0.80808 (11) | 0.0158 (3) | |
C5 | 0.89799 (13) | 0.63239 (15) | 0.60755 (11) | 0.0185 (3) | |
H5A | 0.8904 | 0.7196 | 0.6349 | 0.022* | |
C6 | 0.88715 (13) | 0.60794 (15) | 0.49189 (12) | 0.0193 (3) | |
H6A | 0.8714 | 0.6790 | 0.4411 | 0.023* | |
C7 | 0.89896 (11) | 0.48130 (15) | 0.44897 (11) | 0.0161 (3) | |
C8 | 0.90019 (12) | 0.45817 (16) | 0.32278 (10) | 0.0174 (3) | |
H8A | 0.9452 | 0.3758 | 0.3104 | 0.021* | |
H8B | 0.9459 | 0.5308 | 0.2895 | 0.021* | |
C9 | 0.77439 (12) | 0.44829 (15) | 0.25795 (11) | 0.0161 (3) | |
C10 | 0.79016 (12) | 0.43611 (15) | 0.12766 (11) | 0.0168 (3) | |
H10A | 0.7962 | 0.3421 | 0.1039 | 0.020* | |
C11 | 0.67726 (12) | 0.50009 (15) | 0.07553 (11) | 0.0181 (3) | |
C12 | 0.63315 (13) | 0.49669 (17) | −0.03744 (12) | 0.0219 (3) | |
H12A | 0.6692 | 0.4411 | −0.0904 | 0.026* | |
C13 | 0.53492 (14) | 0.57693 (18) | −0.07056 (13) | 0.0257 (3) | |
H13A | 0.5038 | 0.5765 | −0.1472 | 0.031* | |
C14 | 0.48202 (13) | 0.65749 (18) | 0.00710 (15) | 0.0275 (3) | |
H14A | 0.4147 | 0.7111 | −0.0169 | 0.033* | |
C15 | 0.52649 (13) | 0.66076 (17) | 0.12012 (14) | 0.0238 (3) | |
H15A | 0.4900 | 0.7157 | 0.1732 | 0.029* | |
C16 | 0.62537 (12) | 0.58175 (15) | 0.15320 (12) | 0.0185 (3) | |
C17 | 0.69704 (13) | 0.57468 (15) | 0.26644 (12) | 0.0185 (3) | |
H17A | 0.6422 | 0.5681 | 0.3291 | 0.022* | |
H17B | 0.7495 | 0.6530 | 0.2786 | 0.022* | |
C18 | 0.70480 (12) | 0.32897 (15) | 0.29625 (11) | 0.0166 (3) | |
C19 | 0.75503 (14) | 0.20146 (16) | 0.31348 (12) | 0.0226 (3) | |
H19A | 0.8364 | 0.1762 | 0.3031 | 0.027* | |
C20 | 0.65735 (13) | 0.11507 (16) | 0.35061 (11) | 0.0205 (3) | |
C21 | 0.65690 (16) | −0.01722 (18) | 0.37918 (13) | 0.0278 (3) | |
H21A | 0.7294 | −0.0677 | 0.3798 | 0.033* | |
C22 | 0.54745 (18) | −0.07482 (19) | 0.40716 (14) | 0.0320 (4) | |
H22A | 0.5454 | −0.1657 | 0.4256 | 0.038* | |
C23 | 0.44189 (16) | −0.0006 (2) | 0.40821 (14) | 0.0318 (4) | |
H23A | 0.3683 | −0.0413 | 0.4270 | 0.038* | |
C24 | 0.44272 (14) | 0.13288 (18) | 0.38206 (13) | 0.0269 (3) | |
H24A | 0.3709 | 0.1840 | 0.3843 | 0.032* | |
C25 | 0.55085 (14) | 0.18992 (16) | 0.35255 (11) | 0.0210 (3) | |
C26 | 0.57753 (14) | 0.32620 (17) | 0.31758 (13) | 0.0239 (3) | |
H26A | 0.5273 | 0.3500 | 0.2484 | 0.029* | |
H26B | 0.5602 | 0.3890 | 0.3783 | 0.029* | |
N1 | 0.90975 (11) | 0.78051 (13) | 1.02795 (10) | 0.0189 (3) | |
H1B | 0.9082 (19) | 0.710 (2) | 1.0743 (19) | 0.025 (5)* | |
H1C | 0.966 (2) | 0.840 (2) | 1.0589 (18) | 0.028 (5)* | |
H1D | 0.933 (2) | 0.749 (2) | 0.961 (2) | 0.031 (5)* | |
C27 | 0.81467 (13) | 1.06674 (17) | 0.92266 (13) | 0.0221 (3) | |
H27A | 0.8446 | 1.0993 | 0.9942 | 0.026* | |
C28 | 0.80522 (14) | 1.15072 (17) | 0.82987 (14) | 0.0253 (3) | |
H28A | 0.8271 | 1.2406 | 0.8386 | 0.030* | |
C29 | 0.76376 (14) | 1.10320 (18) | 0.72436 (14) | 0.0273 (3) | |
H29A | 0.7576 | 1.1604 | 0.6609 | 0.033* | |
C30 | 0.73157 (15) | 0.9727 (2) | 0.71210 (13) | 0.0303 (4) | |
H30A | 0.7041 | 0.9399 | 0.6399 | 0.036* | |
C31 | 0.73922 (14) | 0.88904 (18) | 0.80497 (13) | 0.0253 (3) | |
H31A | 0.7161 | 0.7995 | 0.7961 | 0.030* | |
C32 | 0.78069 (12) | 0.93597 (16) | 0.91144 (12) | 0.0198 (3) | |
C33 | 0.78543 (13) | 0.84192 (16) | 1.01074 (12) | 0.0200 (3) | |
H33A | 0.7257 | 0.7699 | 0.9927 | 0.024* | |
C34 | 0.75416 (15) | 0.90403 (17) | 1.12179 (13) | 0.0256 (3) | |
H34A | 0.6714 | 0.9394 | 1.1140 | 0.038* | |
H34B | 0.8114 | 0.9754 | 1.1413 | 0.038* | |
H34C | 0.7595 | 0.8374 | 1.1816 | 0.038* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0316 (5) | 0.0215 (6) | 0.0148 (4) | −0.0046 (4) | 0.0014 (4) | −0.0027 (4) |
O2 | 0.0244 (5) | 0.0211 (6) | 0.0119 (4) | 0.0015 (4) | 0.0020 (3) | 0.0013 (4) |
O3 | 0.0196 (5) | 0.0244 (6) | 0.0107 (4) | −0.0016 (4) | 0.0024 (3) | −0.0004 (4) |
C1 | 0.0247 (7) | 0.0182 (7) | 0.0154 (7) | 0.0024 (6) | 0.0016 (5) | −0.0028 (5) |
C2 | 0.0256 (7) | 0.0192 (8) | 0.0130 (6) | 0.0025 (6) | 0.0021 (5) | 0.0036 (5) |
C3 | 0.0147 (6) | 0.0202 (7) | 0.0119 (6) | −0.0012 (5) | 0.0010 (4) | −0.0004 (5) |
C4 | 0.0155 (6) | 0.0199 (7) | 0.0121 (6) | 0.0017 (5) | 0.0015 (4) | −0.0004 (5) |
C5 | 0.0224 (6) | 0.0174 (7) | 0.0153 (6) | −0.0019 (5) | −0.0010 (5) | −0.0007 (5) |
C6 | 0.0244 (7) | 0.0183 (7) | 0.0147 (6) | −0.0030 (5) | −0.0036 (5) | 0.0037 (5) |
C7 | 0.0140 (5) | 0.0218 (8) | 0.0123 (6) | −0.0024 (5) | 0.0006 (4) | 0.0000 (5) |
C8 | 0.0169 (6) | 0.0230 (8) | 0.0122 (6) | −0.0015 (5) | 0.0004 (5) | 0.0010 (5) |
C9 | 0.0182 (6) | 0.0191 (7) | 0.0110 (5) | −0.0007 (5) | 0.0011 (5) | −0.0005 (5) |
C10 | 0.0195 (6) | 0.0201 (7) | 0.0109 (6) | −0.0022 (5) | 0.0008 (5) | −0.0004 (5) |
C11 | 0.0188 (6) | 0.0191 (7) | 0.0163 (6) | −0.0042 (5) | 0.0002 (5) | 0.0022 (5) |
C12 | 0.0224 (7) | 0.0258 (8) | 0.0170 (6) | −0.0065 (6) | −0.0021 (5) | 0.0016 (6) |
C13 | 0.0229 (7) | 0.0319 (9) | 0.0212 (7) | −0.0076 (6) | −0.0074 (5) | 0.0068 (6) |
C14 | 0.0184 (7) | 0.0290 (9) | 0.0341 (8) | −0.0009 (6) | −0.0055 (6) | 0.0099 (7) |
C15 | 0.0190 (6) | 0.0235 (8) | 0.0287 (7) | −0.0008 (6) | 0.0004 (6) | 0.0034 (6) |
C16 | 0.0186 (6) | 0.0198 (8) | 0.0171 (6) | −0.0030 (5) | 0.0008 (5) | 0.0020 (5) |
C17 | 0.0214 (6) | 0.0198 (7) | 0.0145 (6) | 0.0008 (5) | 0.0019 (5) | 0.0000 (5) |
C18 | 0.0184 (6) | 0.0217 (7) | 0.0093 (5) | −0.0004 (5) | −0.0013 (5) | −0.0009 (5) |
C19 | 0.0232 (7) | 0.0265 (9) | 0.0180 (6) | −0.0027 (6) | 0.0004 (5) | 0.0026 (6) |
C20 | 0.0257 (7) | 0.0243 (8) | 0.0115 (6) | −0.0025 (6) | 0.0010 (5) | −0.0007 (5) |
C21 | 0.0378 (9) | 0.0250 (9) | 0.0212 (7) | 0.0013 (7) | 0.0062 (6) | 0.0033 (6) |
C22 | 0.0513 (10) | 0.0242 (9) | 0.0213 (7) | −0.0089 (7) | 0.0085 (7) | 0.0025 (6) |
C23 | 0.0354 (9) | 0.0367 (10) | 0.0237 (7) | −0.0149 (7) | 0.0042 (6) | 0.0030 (7) |
C24 | 0.0241 (7) | 0.0343 (9) | 0.0224 (7) | −0.0045 (6) | 0.0029 (5) | 0.0057 (7) |
C25 | 0.0240 (7) | 0.0264 (8) | 0.0126 (6) | −0.0035 (6) | 0.0016 (5) | −0.0006 (6) |
C26 | 0.0275 (8) | 0.0260 (8) | 0.0188 (6) | −0.0008 (6) | 0.0068 (5) | 0.0001 (6) |
N1 | 0.0235 (6) | 0.0185 (7) | 0.0145 (6) | −0.0017 (5) | 0.0002 (4) | −0.0015 (5) |
C27 | 0.0195 (6) | 0.0261 (8) | 0.0207 (7) | −0.0024 (6) | 0.0022 (5) | 0.0000 (6) |
C28 | 0.0230 (7) | 0.0236 (9) | 0.0297 (8) | −0.0021 (6) | 0.0043 (6) | 0.0042 (6) |
C29 | 0.0241 (7) | 0.0313 (9) | 0.0262 (7) | −0.0014 (6) | −0.0007 (6) | 0.0087 (7) |
C30 | 0.0306 (8) | 0.0383 (10) | 0.0212 (7) | −0.0053 (7) | −0.0051 (6) | 0.0020 (7) |
C31 | 0.0274 (7) | 0.0253 (8) | 0.0226 (8) | −0.0048 (6) | −0.0038 (6) | 0.0000 (6) |
C32 | 0.0159 (6) | 0.0231 (8) | 0.0204 (7) | −0.0026 (5) | 0.0006 (5) | 0.0013 (6) |
C33 | 0.0188 (6) | 0.0211 (8) | 0.0200 (7) | −0.0029 (5) | 0.0009 (5) | 0.0005 (6) |
C34 | 0.0280 (7) | 0.0276 (9) | 0.0220 (7) | 0.0029 (6) | 0.0072 (6) | 0.0024 (6) |
O1—C4 | 1.2534 (19) | C18—C26 | 1.443 (2) |
O2—C4 | 1.2686 (18) | C19—C20 | 1.479 (2) |
O3—C10 | 1.4365 (17) | C19—H19A | 0.9500 |
O3—H3A | 0.85 (2) | C20—C21 | 1.388 (2) |
C1—C2 | 1.389 (2) | C20—C25 | 1.402 (2) |
C1—C7 | 1.396 (2) | C21—C22 | 1.401 (2) |
C1—H1A | 0.9500 | C21—H21A | 0.9500 |
C2—C3 | 1.386 (2) | C22—C23 | 1.389 (3) |
C2—H2A | 0.9500 | C22—H22A | 0.9500 |
C3—C5 | 1.390 (2) | C23—C24 | 1.393 (3) |
C3—C4 | 1.5111 (17) | C23—H23A | 0.9500 |
C5—C6 | 1.3910 (19) | C24—C25 | 1.391 (2) |
C5—H5A | 0.9500 | C24—H24A | 0.9500 |
C6—C7 | 1.394 (2) | C25—C26 | 1.482 (2) |
C6—H6A | 0.9500 | C26—H26A | 0.9900 |
C7—C8 | 1.5152 (17) | C26—H26B | 0.9900 |
C8—C9 | 1.5463 (17) | N1—C33 | 1.5092 (19) |
C8—H8A | 0.9900 | N1—H1B | 0.91 (2) |
C8—H8B | 0.9900 | N1—H1C | 0.92 (2) |
C9—C18 | 1.521 (2) | N1—H1D | 0.91 (2) |
C9—C17 | 1.550 (2) | C27—C32 | 1.386 (2) |
C9—C10 | 1.5701 (17) | C27—C28 | 1.391 (2) |
C10—C11 | 1.5029 (19) | C27—H27A | 0.9500 |
C10—H10A | 1.0000 | C28—C29 | 1.391 (2) |
C11—C16 | 1.390 (2) | C28—H28A | 0.9500 |
C11—C12 | 1.3956 (19) | C29—C30 | 1.379 (3) |
C12—C13 | 1.393 (2) | C29—H29A | 0.9500 |
C12—H12A | 0.9500 | C30—C31 | 1.390 (2) |
C13—C14 | 1.389 (3) | C30—H30A | 0.9500 |
C13—H13A | 0.9500 | C31—C32 | 1.399 (2) |
C14—C15 | 1.397 (2) | C31—H31A | 0.9500 |
C14—H14A | 0.9500 | C32—C33 | 1.515 (2) |
C15—C16 | 1.391 (2) | C33—C34 | 1.520 (2) |
C15—H15A | 0.9500 | C33—H33A | 1.0000 |
C16—C17 | 1.5153 (19) | C34—H34A | 0.9800 |
C17—H17A | 0.9900 | C34—H34B | 0.9800 |
C17—H17B | 0.9900 | C34—H34C | 0.9800 |
C18—C19 | 1.420 (2) | ||
C10—O3—H3A | 107.5 (15) | C19—C18—C9 | 124.88 (13) |
C2—C1—C7 | 121.07 (14) | C26—C18—C9 | 125.69 (13) |
C2—C1—H1A | 119.5 | C18—C19—C20 | 107.47 (13) |
C7—C1—H1A | 119.5 | C18—C19—H19A | 126.3 |
C3—C2—C1 | 120.60 (13) | C20—C19—H19A | 126.3 |
C3—C2—H2A | 119.7 | C21—C20—C25 | 120.44 (15) |
C1—C2—H2A | 119.7 | C21—C20—C19 | 131.50 (15) |
C2—C3—C5 | 119.03 (12) | C25—C20—C19 | 108.06 (14) |
C2—C3—C4 | 121.31 (13) | C20—C21—C22 | 118.68 (16) |
C5—C3—C4 | 119.60 (13) | C20—C21—H21A | 120.7 |
O1—C4—O2 | 125.47 (12) | C22—C21—H21A | 120.7 |
O1—C4—C3 | 116.64 (12) | C23—C22—C21 | 120.73 (17) |
O2—C4—C3 | 117.87 (13) | C23—C22—H22A | 119.6 |
C3—C5—C6 | 120.15 (14) | C21—C22—H22A | 119.6 |
C3—C5—H5A | 119.9 | C22—C23—C24 | 120.69 (16) |
C6—C5—H5A | 119.9 | C22—C23—H23A | 119.7 |
C5—C6—C7 | 121.38 (14) | C24—C23—H23A | 119.7 |
C5—C6—H6A | 119.3 | C25—C24—C23 | 118.71 (16) |
C7—C6—H6A | 119.3 | C25—C24—H24A | 120.6 |
C6—C7—C1 | 117.70 (12) | C23—C24—H24A | 120.6 |
C6—C7—C8 | 120.71 (13) | C24—C25—C20 | 120.73 (16) |
C1—C7—C8 | 121.47 (13) | C24—C25—C26 | 130.50 (15) |
C7—C8—C9 | 115.85 (11) | C20—C25—C26 | 108.76 (13) |
C7—C8—H8A | 108.3 | C18—C26—C25 | 106.28 (14) |
C9—C8—H8A | 108.3 | C18—C26—H26A | 110.5 |
C7—C8—H8B | 108.3 | C25—C26—H26A | 110.5 |
C9—C8—H8B | 108.3 | C18—C26—H26B | 110.5 |
H8A—C8—H8B | 107.4 | C25—C26—H26B | 110.5 |
C18—C9—C8 | 110.97 (11) | H26A—C26—H26B | 108.7 |
C18—C9—C17 | 110.60 (11) | C33—N1—H1B | 111.0 (13) |
C8—C9—C17 | 113.23 (12) | C33—N1—H1C | 111.2 (14) |
C18—C9—C10 | 108.70 (11) | H1B—N1—H1C | 108.5 (18) |
C8—C9—C10 | 109.95 (10) | C33—N1—H1D | 109.9 (14) |
C17—C9—C10 | 103.03 (11) | H1B—N1—H1D | 105 (2) |
O3—C10—C11 | 109.20 (12) | H1C—N1—H1D | 110.8 (19) |
O3—C10—C9 | 109.55 (11) | C32—C27—C28 | 120.48 (15) |
C11—C10—C9 | 103.24 (11) | C32—C27—H27A | 119.8 |
O3—C10—H10A | 111.5 | C28—C27—H27A | 119.8 |
C11—C10—H10A | 111.5 | C29—C28—C27 | 120.09 (16) |
C9—C10—H10A | 111.5 | C29—C28—H28A | 120.0 |
C16—C11—C12 | 121.13 (14) | C27—C28—H28A | 120.0 |
C16—C11—C10 | 110.62 (12) | C30—C29—C28 | 119.79 (15) |
C12—C11—C10 | 127.79 (14) | C30—C29—H29A | 120.1 |
C13—C12—C11 | 118.24 (15) | C28—C29—H29A | 120.1 |
C13—C12—H12A | 120.9 | C29—C30—C31 | 120.25 (15) |
C11—C12—H12A | 120.9 | C29—C30—H30A | 119.9 |
C14—C13—C12 | 120.76 (14) | C31—C30—H30A | 119.9 |
C14—C13—H13A | 119.6 | C30—C31—C32 | 120.36 (16) |
C12—C13—H13A | 119.6 | C30—C31—H31A | 119.8 |
C13—C14—C15 | 120.86 (15) | C32—C31—H31A | 119.8 |
C13—C14—H14A | 119.6 | C27—C32—C31 | 119.01 (15) |
C15—C14—H14A | 119.6 | C27—C32—C33 | 122.40 (13) |
C16—C15—C14 | 118.51 (15) | C31—C32—C33 | 118.59 (14) |
C16—C15—H15A | 120.7 | N1—C33—C32 | 110.62 (11) |
C14—C15—H15A | 120.7 | N1—C33—C34 | 108.06 (12) |
C11—C16—C15 | 120.49 (13) | C32—C33—C34 | 114.33 (13) |
C11—C16—C17 | 110.15 (12) | N1—C33—H33A | 107.9 |
C15—C16—C17 | 129.23 (14) | C32—C33—H33A | 107.9 |
C16—C17—C9 | 103.90 (12) | C34—C33—H33A | 107.9 |
C16—C17—H17A | 111.0 | C33—C34—H34A | 109.5 |
C9—C17—H17A | 111.0 | C33—C34—H34B | 109.5 |
C16—C17—H17B | 111.0 | H34A—C34—H34B | 109.5 |
C9—C17—H17B | 111.0 | C33—C34—H34C | 109.5 |
H17A—C17—H17B | 109.0 | H34A—C34—H34C | 109.5 |
C19—C18—C26 | 109.40 (13) | H34B—C34—H34C | 109.5 |
C7—C1—C2—C3 | 0.2 (2) | C15—C16—C17—C9 | 167.53 (15) |
C1—C2—C3—C5 | 1.8 (2) | C18—C9—C17—C16 | −88.29 (13) |
C1—C2—C3—C4 | −175.44 (12) | C8—C9—C17—C16 | 146.44 (11) |
C2—C3—C4—O1 | 156.52 (14) | C10—C9—C17—C16 | 27.72 (13) |
C5—C3—C4—O1 | −20.69 (18) | C8—C9—C18—C19 | −44.49 (17) |
C2—C3—C4—O2 | −22.41 (19) | C17—C9—C18—C19 | −171.03 (12) |
C5—C3—C4—O2 | 160.38 (13) | C10—C9—C18—C19 | 76.54 (16) |
C2—C3—C5—C6 | −1.6 (2) | C8—C9—C18—C26 | 137.40 (13) |
C4—C3—C5—C6 | 175.68 (12) | C17—C9—C18—C26 | 10.86 (18) |
C3—C5—C6—C7 | −0.6 (2) | C10—C9—C18—C26 | −101.57 (15) |
C5—C6—C7—C1 | 2.6 (2) | C26—C18—C19—C20 | −1.81 (15) |
C5—C6—C7—C8 | −173.49 (13) | C9—C18—C19—C20 | 179.82 (12) |
C2—C1—C7—C6 | −2.4 (2) | C18—C19—C20—C21 | −179.67 (14) |
C2—C1—C7—C8 | 173.66 (13) | C18—C19—C20—C25 | 1.36 (16) |
C6—C7—C8—C9 | −83.83 (17) | C25—C20—C21—C22 | 1.6 (2) |
C1—C7—C8—C9 | 100.22 (16) | C19—C20—C21—C22 | −177.31 (14) |
C7—C8—C9—C18 | −64.37 (17) | C20—C21—C22—C23 | −1.1 (2) |
C7—C8—C9—C17 | 60.70 (16) | C21—C22—C23—C24 | −0.4 (3) |
C7—C8—C9—C10 | 175.34 (13) | C22—C23—C24—C25 | 1.3 (2) |
C18—C9—C10—O3 | −155.39 (11) | C23—C24—C25—C20 | −0.9 (2) |
C8—C9—C10—O3 | −33.73 (16) | C23—C24—C25—C26 | 177.79 (15) |
C17—C9—C10—O3 | 87.25 (13) | C21—C20—C25—C24 | −0.6 (2) |
C18—C9—C10—C11 | 88.37 (13) | C19—C20—C25—C24 | 178.51 (13) |
C8—C9—C10—C11 | −149.97 (12) | C21—C20—C25—C26 | −179.50 (13) |
C17—C9—C10—C11 | −28.99 (14) | C19—C20—C25—C26 | −0.40 (16) |
O3—C10—C11—C16 | −96.36 (13) | C19—C18—C26—C25 | 1.56 (15) |
C9—C10—C11—C16 | 20.12 (16) | C9—C18—C26—C25 | 179.92 (12) |
O3—C10—C11—C12 | 75.84 (19) | C24—C25—C26—C18 | −179.46 (15) |
C9—C10—C11—C12 | −167.68 (15) | C20—C25—C26—C18 | −0.69 (16) |
C16—C11—C12—C13 | −0.4 (2) | C32—C27—C28—C29 | −1.3 (2) |
C10—C11—C12—C13 | −171.84 (14) | C27—C28—C29—C30 | 0.3 (2) |
C11—C12—C13—C14 | −0.4 (2) | C28—C29—C30—C31 | 0.7 (3) |
C12—C13—C14—C15 | 0.4 (2) | C29—C30—C31—C32 | −0.6 (3) |
C13—C14—C15—C16 | 0.2 (2) | C28—C27—C32—C31 | 1.3 (2) |
C12—C11—C16—C15 | 1.0 (2) | C28—C27—C32—C33 | −177.95 (13) |
C10—C11—C16—C15 | 173.84 (13) | C30—C31—C32—C27 | −0.4 (2) |
C12—C11—C16—C17 | −175.21 (13) | C30—C31—C32—C33 | 178.92 (14) |
C10—C11—C16—C17 | −2.40 (17) | C27—C32—C33—N1 | −86.92 (17) |
C14—C15—C16—C11 | −0.9 (2) | C31—C32—C33—N1 | 93.78 (15) |
C14—C15—C16—C17 | 174.50 (15) | C27—C32—C33—C34 | 35.32 (19) |
C11—C16—C17—C9 | −16.65 (15) | C31—C32—C33—C34 | −143.97 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O2i | 0.85 (2) | 1.86 (2) | 2.7113 (14) | 177 (2) |
N1—H1B···O3ii | 0.91 (2) | 2.05 (2) | 2.8799 (18) | 151 (2) |
N1—H1C···O2iii | 0.92 (2) | 1.88 (2) | 2.7991 (17) | 178 (2) |
N1—H1D···O1 | 0.91 (2) | 1.77 (2) | 2.6697 (16) | 174 (2) |
Symmetry codes: (i) x, y, z−1; (ii) x, y, z+1; (iii) −x+2, y+1/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C8H12N+·C26H21O3− |
Mr | 503.61 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 11.0350 (3), 10.1713 (3), 11.8533 (3) |
β (°) | 93.678 (2) |
V (Å3) | 1327.68 (6) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 0.63 |
Crystal size (mm) | 0.50 × 0.47 × 0.42 |
Data collection | |
Diffractometer | Agilent SuperNova Dual diffractometer, with Cu at zero and an Atlas detector |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2011) |
Tmin, Tmax | 0.749, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 25532, 5221, 5157 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.098, 1.01 |
No. of reflections | 5221 |
No. of parameters | 362 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.21, −0.21 |
Absolute structure | Flack (1983), with 2343 Friedel pairs |
Absolute structure parameter | 0.00 (15) |
Computer programs: CrysAlis PRO (Agilent, 2011), SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O2i | 0.85 (2) | 1.86 (2) | 2.7113 (14) | 177 (2) |
N1—H1B···O3ii | 0.91 (2) | 2.05 (2) | 2.8799 (18) | 151 (2) |
N1—H1C···O2iii | 0.92 (2) | 1.88 (2) | 2.7991 (17) | 178 (2) |
N1—H1D···O1 | 0.91 (2) | 1.77 (2) | 2.6697 (16) | 174 (2) |
Symmetry codes: (i) x, y, z−1; (ii) x, y, z+1; (iii) −x+2, y+1/2, −z+2. |
The indane pharmacophore occurs in many different bioactive molecules, including the nonsteroidal anti-inflammatory indane sulindac (Clinoril, Merck) (Scheper et al., 2007; Shiff et al., 1995), and the protease inhibitor indinavir (Crixivan, Merck), used as a component of highly active antiretroviral therapy (HAART) (Vacca et al., 1994; Lin et al., 1999). As part of our drug-discovery programme, we have identified a number of indanes that demonstrate smooth-muscle relaxation and inhibit mediator release (Sheridan et al., 1990, 1999a,b). More recently, we have synthesized and characterized a series of dimeric indanes that demonstrate potent anti-inflammatory activity (Frankish et al., 2004; Sheridan, Walsh, Cogan et al., 2009; Sheridan, Walsh, Jordan et al., 2009). The title compound, (I), a single enantiomer, is the 1-phenylethanaminium salt of 4-{[(1S,2S)-1-hydroxy-2,3-dihydro-1H,1'H-[2,2'-biinden]-2-yl]methyl}benzoic acid (PH46) and represents a first-in-class anti-inflammatory indane scaffold with potential therapeutic use in the treatment of inflammatory bowel disease (Frankish & Sheridan, 2012). The crystal structure and absolute stereochemistry determination of (I) are described here.
The structure of (I) is shown in Fig. 1. The inden-2-yl group, defined by atoms C18–C26, demonstrates disorder in the position of the C—C and C═C bonds in the five-membered ring. The disorder manifests itself in the appearance of three potential H-atom positions in a difference Fourier synthesis about each of atoms C19 and C26, α to atom C18. The potential disorder in this group was also revealed through a Hirshfeld rigid-bond test (Hirshfeld, 1976), where the differences in the components of the anisotropic displacement parameters along the C18—C19 and C18—C26 bonds exceed 6 s.u.
A simple Conquest (Macrae et al., 2008) search of the Cambridge Structural Database (CSD, VERSION?; Allen, 2002) for inden-2-yl fragments as shown in (II) (see scheme), where R1 is defined as any substituent other than hydrogen, returned a total of 33 entries. The disorder present in the inden-2-yl fragment was documented in a number of structures and the use of a two-part disorder model to separate the two components was attempted [see, for example, CSD refcodes APOVUX (Nikitin et al., 2010), CORBOB (Nikitin et al., 2009), OGEKAN (Nikulin et al., 2008) and TENBAP (Li et al., 1996)], although in the case of APOVUX it was specifically noted that the disorder model failed. A scatterplot of C—C distances versus C═C distances is shown in Fig. 2. The correlation between these two parameters is clear, such that for structures where there is no disorder present, or where the disorder model has been successfully implemented, the values of the C═C and C—C bond lengths are clearly different, ca 1.35 and 1.50 Å, respectively (e.g. OGEKAN), whereas for structures that demonstrate the disorder phenomenon these two bond lengths appear to be correlated and ultimately equilibrate to a value of ca 1.42 Å. The outlier point circled in Fig. 2 (QUGWUK; Basavaiah et al., 2001) is due to the incorrect assignment of the C-atom type when geometrically placing the H atoms. The 1.378 and 1.463 Å bond lengths should be assigned as C═C and C—C bonds, respectively, and not vice versa. The complete list of structures contained within this data set is available in the Supplementary materials. [This has not been received - please supply]
In keeping with the findings above, the C═C and C—C bond lengths (C18═ C19 and C18—C26, respectively) in (I) refined to values of 1.420 (3) and 1.443 (2) Å, respectively (shown as a square in Fig. 2). A disorder model incorporating the two different components, with the sum of the occupancies constrained to unity, was attempted. However, in order for the refinement to converge successfully, the displacement parameters for the α-C atom C18 and its disordered component C18A had to be constrained as isotropic. The model converged, yielding occupancies of the two inden-2-yl components of 0.57 (2)/0.43 (2). The resulting C═C and C—C bond lengths about C18/C18A were 1.29 (2)/1.52 (2) Å for component 1 and 1.35 (2)/1.60 (3) Å for component 2 (triangles in Fig. 2; red and green, respectively, in the electronic version of the journal). Further refinement cycles in which additional bond-length constraints were applied to all bonds about the α-C atom led to instability in the refinement. From this analysis it was concluded that the disorder model was insufficient and so the data presented here is based on the ordered model.
For the inden-2-yl moiety, the five-membered C18–C20/C25/C26 ring is planar, with C18—C19—C20—C25 and C20—C25—C26—C18 torsion angles of 1.36 (16) and -0.69 (16)°, respectively, whereas the five-membered C9–C11/C16/C17 ring of the indan-2-yl moiety adopts an envelope conformation or E form, with atom C9 displaced by -0.478 (2) Å from the mean plane defined by the other four atoms.
The absolute configuration of (I), viz. S, S and S at the chiral centres C9, C10 and C33, respectively, was determined by reference to the a priori knowledge of the chirality of the (S)-(-)-methylbenzylamine used in the salt formation step and by anomalous dispersion methods (Flack, 1983). The determination of the absolute configuration of (I) by anomalous dispersion methods was likely to be challenging, given that the molecular formula and asymmetric unit contain only a single N and three O atoms. To maximize the likelihood of success, a full sphere of data was collected using Cu Kα radiation to a maximum resolution of 0.80 Å. A total of 25532 reflections were collected, yielding a Flack parameter x and standard uncertainty u for this structure of 0.00 (15) based on 2343 Friedel pairs. The value of u is slightly beyond the limit of enantiopure-sufficient distinguishing power (Flack & Bernardinelli, 1999, 2000), and for further confirmation of the absolute configuration a determination using Bayesian statistics on Bijvoet differences (Hooft et al., 2008), as implemented in the program PLATON (Spek, 2009), was performed. This gave probability values p3(ok), p3(twin) and p3(wrong) of 1.000, 0.000 and 0.000, respectively. The calculation was based on 2343 Bijvoet pairs. The absolute structure parameter and standard uncertainty as calculated through this method was determined as 0.11 (4). An improvement in the absolute structure parameter can be made using a Student t distribution rather than a Gaussian distribution (Hooft et al., 2010), giving -0.03 (13) for an ν parameter of 9.79. The overall p2 and p3 probability values calculated using this method remain unchanged at 1.000, 0.000 and 0.000 [Two parameters and three values?].
The packing arrangement for (I) is best descibed as an infinite two-dimensional hydrogen-bond network in the [100] plane of the unit cell. The primary building block of this network is the formation of an infinite chain of PH46 anions through a translational symmetry operation along the c axis of the unit cell. This interaction is formed by a single hydrogen bond from the hydroxy group of the substituted indenyl group, acting as donor, to a carbonyl O atom of the benzoate group, acting as acceptor [O3—H3A···O2i = 2.7113 (14) Å; see Table 1 for hydrogen-bond geometry and symmetry codes]. The hydrogen-bond network is extended by the formation of three further interactions linking the PH46 anion to the (1S)-1-phenylethanaminium cation. These three interactions are formed by the –NH3+ ammonium group acting as donor to O atoms of three different PH46 groups acting as acceptors. Two of these interactions bridge the infinite chain along the c axis to form an R33(8) ring; N1—H1···O1 = 2.6697 (16) Å and N1—H1C···O3ii = 2.8799 (18) Å. The –NH3+ ammonium group of the cation makes a further donor interaction with the carbonyl O atom of a PH46 anion to form a larger overall two-dimensional network in the [100] plane; N1—H1D···O2iii = 2.7991 (17) Å. Fig. 3 shows the four hydrogen-bond interactions described above. An overall view of the crystal packing down the a axis of the unit cell is shown in Fig. 4. All potential hydrogen-bond donors are utilized in the hydrogen-bonding arrangemenent, thus concurring with Etter's first rule of hydrogen bonding for organic compounds, which states all good H-atom donors and acceptors are used in hydrogen bonding (Etter, 1990).